Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12270 and EX31_RS12275 are separated by 273 nucleotides EX31_RS12275 and EX31_RS12280 are separated by 7 nucleotides EX31_RS12280 and EX31_RS12285 are separated by 10 nucleotides
EX31_RS12270: EX31_RS12270 - HTH-type transcriptional activator AaeR, at 124,936 to 125,874
_RS12270
EX31_RS12275: EX31_RS12275 - AaeX family protein, at 126,148 to 126,351
_RS12275
EX31_RS12280: EX31_RS12280 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 126,359 to 127,294
_RS12280
EX31_RS12285: EX31_RS12285 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 127,305 to 129,263
_RS12285
Position (kb) 126
127
128 Strain fitness (log2 ratio) -2
-1
0
1
2 at 125.363 kb on + strand, within EX31_RS12270 at 125.364 kb on - strand, within EX31_RS12270 at 125.364 kb on - strand, within EX31_RS12270 at 125.401 kb on + strand, within EX31_RS12270 at 125.402 kb on - strand, within EX31_RS12270 at 125.402 kb on - strand, within EX31_RS12270 at 125.624 kb on + strand, within EX31_RS12270 at 125.625 kb on - strand, within EX31_RS12270 at 125.625 kb on - strand, within EX31_RS12270 at 125.638 kb on + strand, within EX31_RS12270 at 125.638 kb on + strand, within EX31_RS12270 at 125.638 kb on + strand, within EX31_RS12270 at 125.638 kb on + strand, within EX31_RS12270 at 125.638 kb on + strand, within EX31_RS12270 at 125.638 kb on + strand, within EX31_RS12270 at 125.639 kb on - strand, within EX31_RS12270 at 125.639 kb on - strand, within EX31_RS12270 at 125.639 kb on - strand, within EX31_RS12270 at 125.864 kb on - strand at 125.864 kb on - strand at 125.879 kb on - strand at 125.879 kb on - strand at 125.901 kb on - strand at 125.942 kb on - strand at 125.993 kb on + strand at 125.993 kb on + strand at 125.993 kb on + strand at 125.994 kb on - strand at 125.994 kb on - strand at 125.994 kb on - strand at 125.994 kb on - strand at 125.994 kb on - strand at 125.994 kb on - strand at 126.050 kb on + strand at 126.051 kb on - strand at 126.084 kb on + strand at 126.091 kb on + strand at 126.092 kb on - strand at 126.110 kb on + strand at 126.110 kb on + strand at 126.110 kb on + strand at 126.110 kb on + strand at 126.110 kb on + strand at 126.110 kb on + strand at 126.110 kb on + strand at 126.110 kb on + strand at 126.110 kb on + strand at 126.110 kb on + strand at 126.111 kb on - strand at 126.111 kb on - strand at 126.111 kb on - strand at 126.111 kb on - strand at 126.111 kb on - strand at 126.127 kb on + strand at 126.128 kb on - strand at 126.130 kb on + strand at 126.130 kb on + strand at 126.130 kb on + strand at 126.130 kb on + strand at 126.130 kb on + strand at 126.131 kb on - strand at 126.131 kb on - strand at 126.131 kb on - strand at 126.131 kb on - strand at 126.131 kb on - strand at 126.135 kb on + strand at 126.136 kb on - strand at 126.209 kb on + strand, within EX31_RS12275 at 126.209 kb on + strand, within EX31_RS12275 at 126.209 kb on + strand, within EX31_RS12275 at 126.209 kb on + strand, within EX31_RS12275 at 126.209 kb on + strand, within EX31_RS12275 at 126.209 kb on + strand, within EX31_RS12275 at 126.209 kb on + strand, within EX31_RS12275 at 126.209 kb on + strand, within EX31_RS12275 at 126.209 kb on + strand, within EX31_RS12275 at 126.210 kb on - strand, within EX31_RS12275 at 126.210 kb on - strand, within EX31_RS12275 at 126.210 kb on - strand, within EX31_RS12275 at 126.210 kb on - strand, within EX31_RS12275 at 126.269 kb on - strand, within EX31_RS12275 at 126.310 kb on + strand, within EX31_RS12275 at 126.310 kb on + strand, within EX31_RS12275 at 126.310 kb on + strand, within EX31_RS12275 at 126.310 kb on + strand, within EX31_RS12275 at 126.311 kb on - strand, within EX31_RS12275 at 126.311 kb on - strand, within EX31_RS12275 at 126.311 kb on - strand, within EX31_RS12275 at 126.311 kb on - strand, within EX31_RS12275 at 126.311 kb on - strand, within EX31_RS12275 at 126.311 kb on - strand, within EX31_RS12275 at 126.311 kb on - strand, within EX31_RS12275 at 126.311 kb on - strand, within EX31_RS12275 at 126.326 kb on - strand, within EX31_RS12275 at 126.381 kb on + strand at 126.452 kb on + strand at 126.452 kb on + strand at 126.452 kb on + strand at 126.453 kb on - strand, within EX31_RS12280 at 126.453 kb on - strand, within EX31_RS12280 at 126.453 kb on - strand, within EX31_RS12280 at 126.453 kb on - strand, within EX31_RS12280 at 126.453 kb on - strand, within EX31_RS12280 at 126.453 kb on - strand, within EX31_RS12280 at 126.455 kb on - strand, within EX31_RS12280 at 126.455 kb on - strand, within EX31_RS12280 at 126.579 kb on + strand, within EX31_RS12280 at 126.579 kb on + strand, within EX31_RS12280 at 126.579 kb on + strand, within EX31_RS12280 at 126.579 kb on + strand, within EX31_RS12280 at 126.579 kb on + strand, within EX31_RS12280 at 126.579 kb on + strand, within EX31_RS12280 at 126.579 kb on + strand, within EX31_RS12280 at 126.579 kb on + strand, within EX31_RS12280 at 126.580 kb on - strand, within EX31_RS12280 at 126.580 kb on - strand, within EX31_RS12280 at 126.580 kb on - strand, within EX31_RS12280 at 126.644 kb on + strand, within EX31_RS12280 at 126.647 kb on + strand, within EX31_RS12280 at 126.647 kb on + strand, within EX31_RS12280 at 126.648 kb on - strand, within EX31_RS12280 at 126.705 kb on + strand, within EX31_RS12280 at 126.706 kb on - strand, within EX31_RS12280 at 126.742 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.881 kb on + strand, within EX31_RS12280 at 126.882 kb on - strand, within EX31_RS12280 at 126.882 kb on - strand, within EX31_RS12280 at 126.882 kb on - strand, within EX31_RS12280 at 126.882 kb on - strand, within EX31_RS12280 at 126.882 kb on - strand, within EX31_RS12280 at 126.882 kb on - strand, within EX31_RS12280 at 126.882 kb on - strand, within EX31_RS12280 at 126.882 kb on - strand, within EX31_RS12280 at 126.882 kb on - strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.932 kb on + strand, within EX31_RS12280 at 126.933 kb on - strand, within EX31_RS12280 at 126.933 kb on - strand, within EX31_RS12280 at 126.933 kb on - strand, within EX31_RS12280 at 126.933 kb on - strand, within EX31_RS12280 at 126.944 kb on + strand, within EX31_RS12280 at 126.944 kb on + strand, within EX31_RS12280 at 126.945 kb on - strand, within EX31_RS12280 at 127.022 kb on - strand, within EX31_RS12280 at 127.022 kb on - strand, within EX31_RS12280 at 127.195 kb on + strand, within EX31_RS12280 at 127.195 kb on + strand, within EX31_RS12280 at 127.199 kb on - strand, within EX31_RS12280 at 127.235 kb on - strand at 127.310 kb on + strand at 127.310 kb on + strand at 127.311 kb on - strand at 127.311 kb on - strand at 127.311 kb on - strand at 127.311 kb on - strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.315 kb on + strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.316 kb on - strand at 127.319 kb on + strand at 127.386 kb on + strand at 127.386 kb on + strand at 127.387 kb on - strand at 127.387 kb on - strand at 127.387 kb on - strand at 127.387 kb on - strand at 127.435 kb on + strand at 127.435 kb on + strand at 127.436 kb on - strand at 127.436 kb on - strand at 127.436 kb on - strand at 127.484 kb on + strand at 127.484 kb on + strand at 127.524 kb on - strand, within EX31_RS12285 at 127.581 kb on - strand, within EX31_RS12285 at 127.581 kb on - strand, within EX31_RS12285 at 127.591 kb on + strand, within EX31_RS12285 at 127.591 kb on + strand, within EX31_RS12285 at 127.591 kb on + strand, within EX31_RS12285 at 127.591 kb on + strand, within EX31_RS12285 at 127.591 kb on + strand, within EX31_RS12285 at 127.591 kb on + strand, within EX31_RS12285 at 127.591 kb on + strand, within EX31_RS12285 at 127.592 kb on - strand, within EX31_RS12285 at 127.592 kb on - strand, within EX31_RS12285 at 127.641 kb on - strand, within EX31_RS12285 at 127.653 kb on + strand, within EX31_RS12285 at 127.653 kb on + strand, within EX31_RS12285 at 127.653 kb on + strand, within EX31_RS12285 at 127.654 kb on - strand, within EX31_RS12285 at 127.675 kb on - strand, within EX31_RS12285 at 127.677 kb on - strand, within EX31_RS12285 at 127.677 kb on - strand, within EX31_RS12285 at 127.677 kb on - strand, within EX31_RS12285 at 127.689 kb on - strand, within EX31_RS12285 at 127.922 kb on + strand, within EX31_RS12285 at 128.001 kb on - strand, within EX31_RS12285 at 128.065 kb on - strand, within EX31_RS12285 at 128.065 kb on - strand, within EX31_RS12285 at 128.065 kb on - strand, within EX31_RS12285 at 128.065 kb on - strand, within EX31_RS12285 at 128.170 kb on + strand, within EX31_RS12285 at 128.171 kb on - strand, within EX31_RS12285 at 128.171 kb on - strand, within EX31_RS12285 at 128.286 kb on - strand, within EX31_RS12285
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 125,363 + EX31_RS12270 0.45 -0.2 125,364 - EX31_RS12270 0.46 +0.2 125,364 - EX31_RS12270 0.46 +0.7 125,401 + EX31_RS12270 0.50 -0.2 125,402 - EX31_RS12270 0.50 +0.6 125,402 - EX31_RS12270 0.50 -0.0 125,624 + EX31_RS12270 0.73 -0.7 125,625 - EX31_RS12270 0.73 +1.2 125,625 - EX31_RS12270 0.73 -0.3 125,638 + EX31_RS12270 0.75 -1.0 125,638 + EX31_RS12270 0.75 +1.1 125,638 + EX31_RS12270 0.75 -1.9 125,638 + EX31_RS12270 0.75 -0.4 125,638 + EX31_RS12270 0.75 -1.0 125,638 + EX31_RS12270 0.75 -0.4 125,639 - EX31_RS12270 0.75 +0.4 125,639 - EX31_RS12270 0.75 -0.8 125,639 - EX31_RS12270 0.75 +1.1 125,864 - -0.6 125,864 - -0.4 125,879 - -0.4 125,879 - -0.8 125,901 - -0.8 125,942 - -0.9 125,993 + -0.6 125,993 + +0.3 125,993 + +0.5 125,994 - -0.7 125,994 - -0.5 125,994 - +1.5 125,994 - -0.0 125,994 - -0.3 125,994 - +0.4 126,050 + +0.6 126,051 - -1.0 126,084 + +0.3 126,091 + -0.3 126,092 - -0.2 126,110 + +0.7 126,110 + +1.2 126,110 + +0.0 126,110 + -1.2 126,110 + +0.2 126,110 + +1.1 126,110 + +1.8 126,110 + +0.4 126,110 + -0.3 126,110 + -0.0 126,111 - +0.1 126,111 - -0.6 126,111 - +1.7 126,111 - -0.3 126,111 - -0.2 126,127 + -1.7 126,128 - -1.4 126,130 + -2.2 126,130 + +0.4 126,130 + +0.6 126,130 + +1.1 126,130 + -0.9 126,131 - -0.5 126,131 - +0.0 126,131 - +0.1 126,131 - +1.1 126,131 - +0.1 126,135 + +0.0 126,136 - +0.1 126,209 + EX31_RS12275 0.30 -0.1 126,209 + EX31_RS12275 0.30 -0.2 126,209 + EX31_RS12275 0.30 -0.3 126,209 + EX31_RS12275 0.30 -0.1 126,209 + EX31_RS12275 0.30 -1.2 126,209 + EX31_RS12275 0.30 -0.3 126,209 + EX31_RS12275 0.30 +0.5 126,209 + EX31_RS12275 0.30 +0.2 126,209 + EX31_RS12275 0.30 -2.5 126,210 - EX31_RS12275 0.30 -0.5 126,210 - EX31_RS12275 0.30 -1.5 126,210 - EX31_RS12275 0.30 -0.8 126,210 - EX31_RS12275 0.30 -0.3 126,269 - EX31_RS12275 0.59 +0.3 126,310 + EX31_RS12275 0.79 -2.7 126,310 + EX31_RS12275 0.79 -0.6 126,310 + EX31_RS12275 0.79 -0.3 126,310 + EX31_RS12275 0.79 -0.0 126,311 - EX31_RS12275 0.80 +0.6 126,311 - EX31_RS12275 0.80 -0.3 126,311 - EX31_RS12275 0.80 +1.4 126,311 - EX31_RS12275 0.80 -0.9 126,311 - EX31_RS12275 0.80 -1.4 126,311 - EX31_RS12275 0.80 -0.4 126,311 - EX31_RS12275 0.80 -0.8 126,311 - EX31_RS12275 0.80 -0.2 126,326 - EX31_RS12275 0.87 -0.8 126,381 + -0.2 126,452 + -1.1 126,452 + +0.1 126,452 + -0.1 126,453 - EX31_RS12280 0.10 -0.2 126,453 - EX31_RS12280 0.10 -0.2 126,453 - EX31_RS12280 0.10 -0.8 126,453 - EX31_RS12280 0.10 -0.7 126,453 - EX31_RS12280 0.10 +0.1 126,453 - EX31_RS12280 0.10 -0.6 126,455 - EX31_RS12280 0.10 -0.2 126,455 - EX31_RS12280 0.10 -0.7 126,579 + EX31_RS12280 0.24 +0.1 126,579 + EX31_RS12280 0.24 +0.9 126,579 + EX31_RS12280 0.24 -0.2 126,579 + EX31_RS12280 0.24 +0.7 126,579 + EX31_RS12280 0.24 -0.3 126,579 + EX31_RS12280 0.24 -0.7 126,579 + EX31_RS12280 0.24 +1.8 126,579 + EX31_RS12280 0.24 +1.8 126,580 - EX31_RS12280 0.24 +0.3 126,580 - EX31_RS12280 0.24 -1.1 126,580 - EX31_RS12280 0.24 -0.2 126,644 + EX31_RS12280 0.30 -0.2 126,647 + EX31_RS12280 0.31 +0.2 126,647 + EX31_RS12280 0.31 -1.0 126,648 - EX31_RS12280 0.31 +0.5 126,705 + EX31_RS12280 0.37 +0.2 126,706 - EX31_RS12280 0.37 +0.0 126,742 + EX31_RS12280 0.41 -0.5 126,881 + EX31_RS12280 0.56 -0.1 126,881 + EX31_RS12280 0.56 -0.1 126,881 + EX31_RS12280 0.56 +0.5 126,881 + EX31_RS12280 0.56 +0.1 126,881 + EX31_RS12280 0.56 -0.2 126,881 + EX31_RS12280 0.56 +0.3 126,881 + EX31_RS12280 0.56 +0.3 126,881 + EX31_RS12280 0.56 -0.0 126,881 + EX31_RS12280 0.56 -1.5 126,881 + EX31_RS12280 0.56 +0.0 126,881 + EX31_RS12280 0.56 -0.9 126,882 - EX31_RS12280 0.56 +1.1 126,882 - EX31_RS12280 0.56 +0.2 126,882 - EX31_RS12280 0.56 -0.4 126,882 - EX31_RS12280 0.56 -0.2 126,882 - EX31_RS12280 0.56 -1.1 126,882 - EX31_RS12280 0.56 -0.6 126,882 - EX31_RS12280 0.56 -0.4 126,882 - EX31_RS12280 0.56 +0.3 126,882 - EX31_RS12280 0.56 -0.7 126,932 + EX31_RS12280 0.61 -0.6 126,932 + EX31_RS12280 0.61 +1.2 126,932 + EX31_RS12280 0.61 +0.9 126,932 + EX31_RS12280 0.61 -0.1 126,932 + EX31_RS12280 0.61 -1.7 126,932 + EX31_RS12280 0.61 -0.1 126,932 + EX31_RS12280 0.61 +0.1 126,932 + EX31_RS12280 0.61 +1.3 126,932 + EX31_RS12280 0.61 +0.2 126,932 + EX31_RS12280 0.61 +1.0 126,932 + EX31_RS12280 0.61 +0.1 126,932 + EX31_RS12280 0.61 -0.1 126,932 + EX31_RS12280 0.61 -1.2 126,932 + EX31_RS12280 0.61 -0.2 126,932 + EX31_RS12280 0.61 +1.1 126,932 + EX31_RS12280 0.61 -0.3 126,933 - EX31_RS12280 0.61 -0.2 126,933 - EX31_RS12280 0.61 +0.4 126,933 - EX31_RS12280 0.61 +1.2 126,933 - EX31_RS12280 0.61 -1.1 126,944 + EX31_RS12280 0.62 -2.6 126,944 + EX31_RS12280 0.62 -0.2 126,945 - EX31_RS12280 0.63 +0.9 127,022 - EX31_RS12280 0.71 -0.0 127,022 - EX31_RS12280 0.71 -0.7 127,195 + EX31_RS12280 0.89 -0.3 127,195 + EX31_RS12280 0.89 -0.6 127,199 - EX31_RS12280 0.90 +1.0 127,235 - -0.1 127,310 + +0.1 127,310 + +1.1 127,311 - -0.0 127,311 - -1.6 127,311 - -0.9 127,311 - -1.1 127,315 + +0.3 127,315 + -0.4 127,315 + +1.4 127,315 + -0.1 127,315 + -0.4 127,315 + -0.4 127,315 + -0.2 127,315 + +0.6 127,315 + -0.1 127,315 + +0.4 127,315 + +1.3 127,315 + +0.2 127,315 + -0.0 127,315 + -0.4 127,315 + -0.7 127,315 + +0.9 127,316 - -0.4 127,316 - -1.5 127,316 - +0.6 127,316 - -0.7 127,316 - -0.0 127,316 - -0.1 127,316 - +0.9 127,316 - -0.4 127,316 - +0.4 127,316 - -0.2 127,316 - -0.5 127,316 - +0.4 127,316 - -0.2 127,316 - -0.0 127,316 - +1.0 127,316 - +0.1 127,316 - +1.3 127,319 + -0.0 127,386 + -0.8 127,386 + -0.1 127,387 - -0.2 127,387 - +0.2 127,387 - -0.3 127,387 - +0.4 127,435 + -0.1 127,435 + +0.1 127,436 - +0.9 127,436 - -0.4 127,436 - +1.1 127,484 + +2.7 127,484 + +1.3 127,524 - EX31_RS12285 0.11 +1.2 127,581 - EX31_RS12285 0.14 -0.6 127,581 - EX31_RS12285 0.14 -0.4 127,591 + EX31_RS12285 0.15 -2.1 127,591 + EX31_RS12285 0.15 -1.0 127,591 + EX31_RS12285 0.15 +0.4 127,591 + EX31_RS12285 0.15 -1.2 127,591 + EX31_RS12285 0.15 +0.0 127,591 + EX31_RS12285 0.15 -0.3 127,591 + EX31_RS12285 0.15 +0.5 127,592 - EX31_RS12285 0.15 +0.0 127,592 - EX31_RS12285 0.15 +0.5 127,641 - EX31_RS12285 0.17 -0.1 127,653 + EX31_RS12285 0.18 +0.1 127,653 + EX31_RS12285 0.18 +0.3 127,653 + EX31_RS12285 0.18 -1.1 127,654 - EX31_RS12285 0.18 +0.8 127,675 - EX31_RS12285 0.19 +0.6 127,677 - EX31_RS12285 0.19 +0.9 127,677 - EX31_RS12285 0.19 -1.6 127,677 - EX31_RS12285 0.19 +0.8 127,689 - EX31_RS12285 0.20 -1.2 127,922 + EX31_RS12285 0.31 -0.5 128,001 - EX31_RS12285 0.36 -0.8 128,065 - EX31_RS12285 0.39 -0.9 128,065 - EX31_RS12285 0.39 +0.5 128,065 - EX31_RS12285 0.39 +1.5 128,065 - EX31_RS12285 0.39 -0.3 128,170 + EX31_RS12285 0.44 -0.4 128,171 - EX31_RS12285 0.44 -0.6 128,171 - EX31_RS12285 0.44 -1.0 128,286 - EX31_RS12285 0.50 -0.3
Or see this region's nucleotide sequence