Strain Fitness in Rahnella sp. WP5 around EX31_RS12140

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12135 and EX31_RS12140 are separated by 598 nucleotidesEX31_RS12140 and EX31_RS12145 are separated by 8 nucleotides EX31_RS12135: EX31_RS12135 - LrgB family protein, at 94,311 to 95,000 _RS12135 EX31_RS12140: EX31_RS12140 - amino acid ABC transporter ATP-binding protein, at 95,599 to 96,360 _RS12140 EX31_RS12145: EX31_RS12145 - amino acid ABC transporter permease, at 96,369 to 97,478 _RS12145 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1at 94.612 kb on + strand, within EX31_RS12135at 94.613 kb on - strand, within EX31_RS12135at 94.679 kb on + strand, within EX31_RS12135at 94.679 kb on + strand, within EX31_RS12135at 94.679 kb on + strand, within EX31_RS12135at 94.697 kb on + strand, within EX31_RS12135at 94.697 kb on + strand, within EX31_RS12135at 94.698 kb on - strand, within EX31_RS12135at 94.698 kb on - strand, within EX31_RS12135at 94.698 kb on - strand, within EX31_RS12135at 94.698 kb on - strand, within EX31_RS12135at 94.703 kb on + strand, within EX31_RS12135at 94.703 kb on + strand, within EX31_RS12135at 94.704 kb on - strand, within EX31_RS12135at 94.783 kb on + strand, within EX31_RS12135at 94.805 kb on + strand, within EX31_RS12135at 94.806 kb on - strand, within EX31_RS12135at 94.897 kb on - strand, within EX31_RS12135at 94.897 kb on - strand, within EX31_RS12135at 94.924 kb on + strand, within EX31_RS12135at 95.118 kb on + strandat 95.118 kb on + strandat 95.121 kb on + strandat 95.121 kb on + strandat 95.121 kb on + strandat 95.121 kb on + strandat 95.122 kb on - strandat 95.122 kb on - strandat 95.122 kb on - strandat 95.277 kb on + strandat 95.433 kb on + strandat 95.433 kb on + strandat 95.434 kb on - strandat 95.701 kb on - strand, within EX31_RS12140at 95.749 kb on + strand, within EX31_RS12140at 95.750 kb on - strand, within EX31_RS12140at 95.853 kb on + strand, within EX31_RS12140at 95.854 kb on - strand, within EX31_RS12140at 95.854 kb on - strand, within EX31_RS12140at 95.854 kb on - strand, within EX31_RS12140at 95.854 kb on - strand, within EX31_RS12140at 95.868 kb on + strand, within EX31_RS12140at 95.868 kb on + strand, within EX31_RS12140at 95.868 kb on + strand, within EX31_RS12140at 95.868 kb on + strand, within EX31_RS12140at 95.868 kb on + strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.869 kb on - strand, within EX31_RS12140at 95.931 kb on + strand, within EX31_RS12140at 95.931 kb on + strand, within EX31_RS12140at 95.931 kb on + strand, within EX31_RS12140at 95.966 kb on + strand, within EX31_RS12140at 95.966 kb on + strand, within EX31_RS12140at 96.085 kb on - strand, within EX31_RS12140at 96.109 kb on + strand, within EX31_RS12140at 96.237 kb on + strand, within EX31_RS12140at 96.238 kb on - strand, within EX31_RS12140at 96.278 kb on - strand, within EX31_RS12140at 96.300 kb on + strandat 96.300 kb on + strandat 96.301 kb on - strandat 96.327 kb on + strandat 96.327 kb on + strandat 96.327 kb on + strandat 96.327 kb on + strandat 96.327 kb on + strandat 96.328 kb on - strandat 96.328 kb on - strandat 96.328 kb on - strandat 96.365 kb on + strandat 96.365 kb on + strandat 96.365 kb on + strandat 96.365 kb on + strandat 96.416 kb on + strandat 96.416 kb on + strandat 96.417 kb on - strandat 96.431 kb on + strandat 96.431 kb on + strandat 96.432 kb on - strandat 96.432 kb on - strandat 96.448 kb on + strandat 96.469 kb on + strandat 96.469 kb on + strandat 96.469 kb on + strandat 96.470 kb on - strandat 96.470 kb on - strandat 96.587 kb on + strand, within EX31_RS12145at 96.587 kb on + strand, within EX31_RS12145at 96.587 kb on + strand, within EX31_RS12145at 96.588 kb on - strand, within EX31_RS12145at 96.588 kb on - strand, within EX31_RS12145at 96.588 kb on - strand, within EX31_RS12145at 96.588 kb on - strand, within EX31_RS12145at 96.640 kb on - strand, within EX31_RS12145at 96.640 kb on - strand, within EX31_RS12145at 96.739 kb on + strand, within EX31_RS12145at 96.739 kb on + strand, within EX31_RS12145at 96.739 kb on + strand, within EX31_RS12145at 96.739 kb on + strand, within EX31_RS12145at 96.739 kb on + strand, within EX31_RS12145at 96.739 kb on + strand, within EX31_RS12145at 96.740 kb on - strand, within EX31_RS12145at 96.740 kb on - strand, within EX31_RS12145at 96.740 kb on - strand, within EX31_RS12145at 96.740 kb on - strand, within EX31_RS12145at 96.792 kb on - strand, within EX31_RS12145at 96.852 kb on - strand, within EX31_RS12145at 96.897 kb on - strand, within EX31_RS12145at 96.938 kb on + strand, within EX31_RS12145at 96.938 kb on + strand, within EX31_RS12145at 96.938 kb on + strand, within EX31_RS12145at 96.938 kb on + strand, within EX31_RS12145at 96.938 kb on + strand, within EX31_RS12145at 96.938 kb on + strand, within EX31_RS12145at 96.939 kb on - strand, within EX31_RS12145at 96.939 kb on - strand, within EX31_RS12145at 96.939 kb on - strand, within EX31_RS12145at 96.939 kb on - strand, within EX31_RS12145at 96.939 kb on - strand, within EX31_RS12145at 97.097 kb on + strand, within EX31_RS12145at 97.098 kb on - strand, within EX31_RS12145at 97.099 kb on + strand, within EX31_RS12145at 97.099 kb on + strand, within EX31_RS12145at 97.099 kb on + strand, within EX31_RS12145at 97.099 kb on + strand, within EX31_RS12145at 97.099 kb on + strand, within EX31_RS12145at 97.099 kb on + strand, within EX31_RS12145at 97.099 kb on + strand, within EX31_RS12145at 97.099 kb on + strand, within EX31_RS12145at 97.099 kb on + strand, within EX31_RS12145at 97.100 kb on - strand, within EX31_RS12145at 97.100 kb on - strand, within EX31_RS12145at 97.100 kb on - strand, within EX31_RS12145at 97.100 kb on - strand, within EX31_RS12145at 97.100 kb on - strand, within EX31_RS12145at 97.125 kb on - strand, within EX31_RS12145at 97.207 kb on + strand, within EX31_RS12145at 97.207 kb on + strand, within EX31_RS12145at 97.208 kb on - strand, within EX31_RS12145at 97.348 kb on - strand, within EX31_RS12145

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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94,612 + EX31_RS12135 0.44 +1.6
94,613 - EX31_RS12135 0.44 +0.7
94,679 + EX31_RS12135 0.53 +1.2
94,679 + EX31_RS12135 0.53 -0.5
94,679 + EX31_RS12135 0.53 -1.6
94,697 + EX31_RS12135 0.56 -0.0
94,697 + EX31_RS12135 0.56 -0.8
94,698 - EX31_RS12135 0.56 +0.4
94,698 - EX31_RS12135 0.56 +0.1
94,698 - EX31_RS12135 0.56 -1.0
94,698 - EX31_RS12135 0.56 +1.1
94,703 + EX31_RS12135 0.57 -0.5
94,703 + EX31_RS12135 0.57 -1.1
94,704 - EX31_RS12135 0.57 -0.8
94,783 + EX31_RS12135 0.68 +0.7
94,805 + EX31_RS12135 0.72 -0.3
94,806 - EX31_RS12135 0.72 +0.1
94,897 - EX31_RS12135 0.85 -0.5
94,897 - EX31_RS12135 0.85 -0.6
94,924 + EX31_RS12135 0.89 +1.0
95,118 + -0.3
95,118 + -0.4
95,121 + -0.3
95,121 + -0.2
95,121 + -0.7
95,121 + +0.2
95,122 - +0.1
95,122 - +1.2
95,122 - +0.5
95,277 + +0.7
95,433 + +0.0
95,433 + +0.1
95,434 - -0.5
95,701 - EX31_RS12140 0.13 -0.6
95,749 + EX31_RS12140 0.20 -0.8
95,750 - EX31_RS12140 0.20 +1.0
95,853 + EX31_RS12140 0.33 +1.3
95,854 - EX31_RS12140 0.33 -0.1
95,854 - EX31_RS12140 0.33 -0.5
95,854 - EX31_RS12140 0.33 +1.5
95,854 - EX31_RS12140 0.33 +0.9
95,868 + EX31_RS12140 0.35 +0.4
95,868 + EX31_RS12140 0.35 -0.4
95,868 + EX31_RS12140 0.35 +1.6
95,868 + EX31_RS12140 0.35 +0.6
95,868 + EX31_RS12140 0.35 -0.4
95,869 - EX31_RS12140 0.35 +0.6
95,869 - EX31_RS12140 0.35 -0.5
95,869 - EX31_RS12140 0.35 -0.7
95,869 - EX31_RS12140 0.35 -0.6
95,869 - EX31_RS12140 0.35 +0.1
95,869 - EX31_RS12140 0.35 +1.3
95,869 - EX31_RS12140 0.35 +0.1
95,869 - EX31_RS12140 0.35 -0.4
95,869 - EX31_RS12140 0.35 -0.4
95,869 - EX31_RS12140 0.35 -0.2
95,869 - EX31_RS12140 0.35 +0.1
95,869 - EX31_RS12140 0.35 +0.1
95,931 + EX31_RS12140 0.44 +0.1
95,931 + EX31_RS12140 0.44 -0.9
95,931 + EX31_RS12140 0.44 -0.3
95,966 + EX31_RS12140 0.48 +0.8
95,966 + EX31_RS12140 0.48 +0.9
96,085 - EX31_RS12140 0.64 -0.1
96,109 + EX31_RS12140 0.67 +0.8
96,237 + EX31_RS12140 0.84 +0.8
96,238 - EX31_RS12140 0.84 +0.5
96,278 - EX31_RS12140 0.89 -0.1
96,300 + -0.7
96,300 + +0.6
96,301 - -0.3
96,327 + +1.2
96,327 + -0.0
96,327 + +0.3
96,327 + -0.2
96,327 + +0.1
96,328 - +0.4
96,328 - -0.6
96,328 - +0.5
96,365 + +1.0
96,365 + -0.9
96,365 + +0.5
96,365 + -0.2
96,416 + +1.1
96,416 + +1.6
96,417 - +1.5
96,431 + +1.2
96,431 + -0.7
96,432 - -0.1
96,432 - -0.2
96,448 + -0.5
96,469 + -0.3
96,469 + +1.5
96,469 + -0.9
96,470 - +0.5
96,470 - -1.5
96,587 + EX31_RS12145 0.20 -1.1
96,587 + EX31_RS12145 0.20 +0.3
96,587 + EX31_RS12145 0.20 -2.4
96,588 - EX31_RS12145 0.20 +0.6
96,588 - EX31_RS12145 0.20 -0.8
96,588 - EX31_RS12145 0.20 -0.3
96,588 - EX31_RS12145 0.20 +0.1
96,640 - EX31_RS12145 0.24 -0.5
96,640 - EX31_RS12145 0.24 +0.5
96,739 + EX31_RS12145 0.33 -0.4
96,739 + EX31_RS12145 0.33 +0.8
96,739 + EX31_RS12145 0.33 -0.1
96,739 + EX31_RS12145 0.33 -1.3
96,739 + EX31_RS12145 0.33 +0.2
96,739 + EX31_RS12145 0.33 +0.6
96,740 - EX31_RS12145 0.33 -1.1
96,740 - EX31_RS12145 0.33 +0.0
96,740 - EX31_RS12145 0.33 -0.6
96,740 - EX31_RS12145 0.33 -1.8
96,792 - EX31_RS12145 0.38 -0.2
96,852 - EX31_RS12145 0.44 -0.1
96,897 - EX31_RS12145 0.48 -0.1
96,938 + EX31_RS12145 0.51 +0.7
96,938 + EX31_RS12145 0.51 -0.6
96,938 + EX31_RS12145 0.51 -0.9
96,938 + EX31_RS12145 0.51 +0.3
96,938 + EX31_RS12145 0.51 -0.7
96,938 + EX31_RS12145 0.51 -0.2
96,939 - EX31_RS12145 0.51 -0.6
96,939 - EX31_RS12145 0.51 +0.2
96,939 - EX31_RS12145 0.51 -1.2
96,939 - EX31_RS12145 0.51 +0.8
96,939 - EX31_RS12145 0.51 +1.3
97,097 + EX31_RS12145 0.66 -0.6
97,098 - EX31_RS12145 0.66 +0.6
97,099 + EX31_RS12145 0.66 -0.6
97,099 + EX31_RS12145 0.66 +0.3
97,099 + EX31_RS12145 0.66 -1.1
97,099 + EX31_RS12145 0.66 -0.3
97,099 + EX31_RS12145 0.66 +0.3
97,099 + EX31_RS12145 0.66 -1.0
97,099 + EX31_RS12145 0.66 -0.2
97,099 + EX31_RS12145 0.66 -1.5
97,099 + EX31_RS12145 0.66 +0.1
97,100 - EX31_RS12145 0.66 +0.3
97,100 - EX31_RS12145 0.66 -0.2
97,100 - EX31_RS12145 0.66 -0.1
97,100 - EX31_RS12145 0.66 +1.7
97,100 - EX31_RS12145 0.66 -0.7
97,125 - EX31_RS12145 0.68 +0.1
97,207 + EX31_RS12145 0.75 -0.2
97,207 + EX31_RS12145 0.75 +0.3
97,208 - EX31_RS12145 0.76 -0.3
97,348 - EX31_RS12145 0.88 -0.1

Or see this region's nucleotide sequence