Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10775 and EX31_RS10780 are separated by 261 nucleotides EX31_RS10780 and EX31_RS10785 are separated by 833 nucleotides
EX31_RS10775: EX31_RS10775 - DHA2 family efflux MFS transporter permease subunit, at 72,741 to 74,294
_RS10775
EX31_RS10780: EX31_RS10780 - L,D-transpeptidase family protein, at 74,556 to 75,476
_RS10780
EX31_RS10785: EX31_RS10785 - alkaline phosphatase, at 76,310 to 77,740
_RS10785
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 73.631 kb on + strand, within EX31_RS10775 at 73.631 kb on + strand, within EX31_RS10775 at 73.631 kb on + strand, within EX31_RS10775 at 73.631 kb on + strand, within EX31_RS10775 at 73.631 kb on + strand, within EX31_RS10775 at 73.632 kb on - strand, within EX31_RS10775 at 73.632 kb on - strand, within EX31_RS10775 at 73.635 kb on + strand, within EX31_RS10775 at 73.636 kb on - strand, within EX31_RS10775 at 73.636 kb on - strand, within EX31_RS10775 at 73.636 kb on - strand, within EX31_RS10775 at 73.636 kb on - strand, within EX31_RS10775 at 73.691 kb on + strand, within EX31_RS10775 at 73.691 kb on + strand, within EX31_RS10775 at 73.692 kb on - strand, within EX31_RS10775 at 73.813 kb on + strand, within EX31_RS10775 at 73.892 kb on + strand, within EX31_RS10775 at 73.892 kb on + strand, within EX31_RS10775 at 73.892 kb on + strand, within EX31_RS10775 at 73.892 kb on + strand, within EX31_RS10775 at 73.892 kb on + strand, within EX31_RS10775 at 73.893 kb on - strand, within EX31_RS10775 at 73.893 kb on - strand, within EX31_RS10775 at 74.022 kb on - strand, within EX31_RS10775 at 74.270 kb on + strand at 74.292 kb on + strand at 74.292 kb on + strand at 74.293 kb on - strand at 74.393 kb on + strand at 74.401 kb on + strand at 74.404 kb on - strand at 74.407 kb on + strand at 74.407 kb on + strand at 74.408 kb on - strand at 74.437 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.458 kb on + strand at 74.459 kb on - strand at 74.459 kb on - strand at 74.459 kb on - strand at 74.468 kb on + strand at 74.468 kb on + strand at 74.468 kb on + strand at 74.468 kb on + strand at 74.469 kb on - strand at 74.469 kb on - strand at 74.469 kb on - strand at 74.473 kb on + strand at 74.473 kb on + strand at 74.473 kb on + strand at 74.473 kb on + strand at 74.473 kb on + strand at 74.607 kb on + strand at 74.607 kb on + strand at 74.607 kb on + strand at 74.607 kb on + strand at 74.607 kb on + strand at 74.608 kb on - strand at 74.609 kb on + strand at 74.609 kb on + strand at 74.609 kb on + strand at 74.609 kb on + strand at 74.634 kb on + strand at 74.684 kb on + strand, within EX31_RS10780 at 74.684 kb on + strand, within EX31_RS10780 at 74.684 kb on + strand, within EX31_RS10780 at 74.684 kb on + strand, within EX31_RS10780 at 74.684 kb on + strand, within EX31_RS10780 at 74.684 kb on + strand, within EX31_RS10780 at 74.685 kb on - strand, within EX31_RS10780 at 74.685 kb on - strand, within EX31_RS10780 at 74.765 kb on + strand, within EX31_RS10780 at 74.765 kb on + strand, within EX31_RS10780 at 74.886 kb on + strand, within EX31_RS10780 at 74.886 kb on + strand, within EX31_RS10780 at 74.886 kb on + strand, within EX31_RS10780 at 74.886 kb on + strand, within EX31_RS10780 at 74.887 kb on - strand, within EX31_RS10780 at 74.889 kb on + strand, within EX31_RS10780 at 74.889 kb on + strand, within EX31_RS10780 at 74.889 kb on + strand, within EX31_RS10780 at 74.890 kb on - strand, within EX31_RS10780 at 74.890 kb on - strand, within EX31_RS10780 at 74.890 kb on - strand, within EX31_RS10780 at 74.909 kb on + strand, within EX31_RS10780 at 74.909 kb on + strand, within EX31_RS10780 at 74.909 kb on + strand, within EX31_RS10780 at 74.987 kb on + strand, within EX31_RS10780 at 75.036 kb on + strand, within EX31_RS10780 at 75.036 kb on + strand, within EX31_RS10780 at 75.036 kb on + strand, within EX31_RS10780 at 75.111 kb on + strand, within EX31_RS10780 at 75.111 kb on + strand, within EX31_RS10780 at 75.111 kb on + strand, within EX31_RS10780 at 75.111 kb on + strand, within EX31_RS10780 at 75.111 kb on + strand, within EX31_RS10780 at 75.111 kb on + strand, within EX31_RS10780 at 75.111 kb on + strand, within EX31_RS10780 at 75.126 kb on + strand, within EX31_RS10780 at 75.126 kb on + strand, within EX31_RS10780 at 75.300 kb on + strand, within EX31_RS10780 at 75.300 kb on + strand, within EX31_RS10780 at 75.300 kb on + strand, within EX31_RS10780 at 75.300 kb on + strand, within EX31_RS10780 at 75.302 kb on + strand, within EX31_RS10780 at 75.302 kb on + strand, within EX31_RS10780 at 75.302 kb on + strand, within EX31_RS10780 at 75.302 kb on + strand, within EX31_RS10780 at 75.303 kb on - strand, within EX31_RS10780 at 75.303 kb on - strand, within EX31_RS10780 at 75.329 kb on + strand, within EX31_RS10780 at 75.477 kb on + strand at 75.533 kb on + strand at 75.657 kb on - strand at 75.751 kb on - strand at 75.815 kb on + strand at 75.816 kb on - strand at 75.889 kb on + strand at 75.889 kb on + strand at 75.890 kb on - strand at 75.890 kb on - strand at 76.168 kb on - strand at 76.168 kb on - strand at 76.217 kb on - strand at 76.265 kb on - strand at 76.268 kb on + strand at 76.269 kb on - strand at 76.269 kb on - strand at 76.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 73,631 + EX31_RS10775 0.57 +1.2 73,631 + EX31_RS10775 0.57 -1.2 73,631 + EX31_RS10775 0.57 +0.8 73,631 + EX31_RS10775 0.57 +0.7 73,631 + EX31_RS10775 0.57 +0.1 73,632 - EX31_RS10775 0.57 +0.7 73,632 - EX31_RS10775 0.57 -0.1 73,635 + EX31_RS10775 0.58 +1.2 73,636 - EX31_RS10775 0.58 +2.1 73,636 - EX31_RS10775 0.58 +1.2 73,636 - EX31_RS10775 0.58 -1.4 73,636 - EX31_RS10775 0.58 -1.0 73,691 + EX31_RS10775 0.61 -0.1 73,691 + EX31_RS10775 0.61 +0.3 73,692 - EX31_RS10775 0.61 +0.8 73,813 + EX31_RS10775 0.69 +1.2 73,892 + EX31_RS10775 0.74 +0.4 73,892 + EX31_RS10775 0.74 -0.3 73,892 + EX31_RS10775 0.74 +0.5 73,892 + EX31_RS10775 0.74 -0.2 73,892 + EX31_RS10775 0.74 -0.6 73,893 - EX31_RS10775 0.74 +0.3 73,893 - EX31_RS10775 0.74 -0.1 74,022 - EX31_RS10775 0.82 +2.1 74,270 + +1.7 74,292 + +0.8 74,292 + -0.4 74,293 - -1.4 74,393 + +1.3 74,401 + +0.7 74,404 - +0.6 74,407 + +1.1 74,407 + +0.2 74,408 - -1.4 74,437 + +0.1 74,458 + -0.6 74,458 + +1.1 74,458 + +0.1 74,458 + -0.6 74,458 + -0.8 74,458 + -0.4 74,458 + +0.7 74,458 + +0.5 74,458 + -2.3 74,458 + +0.4 74,458 + +0.9 74,458 + +0.7 74,458 + -2.1 74,459 - -1.4 74,459 - -1.0 74,459 - -0.7 74,468 + +0.6 74,468 + +0.5 74,468 + -0.9 74,468 + +0.0 74,469 - -0.4 74,469 - -1.3 74,469 - +0.8 74,473 + +1.6 74,473 + +0.8 74,473 + -0.7 74,473 + -1.1 74,473 + +0.2 74,607 + -0.8 74,607 + -2.8 74,607 + -1.4 74,607 + -0.1 74,607 + -0.9 74,608 - -0.1 74,609 + -0.7 74,609 + -1.1 74,609 + -1.5 74,609 + +0.3 74,634 + -2.1 74,684 + EX31_RS10780 0.14 -3.1 74,684 + EX31_RS10780 0.14 -1.4 74,684 + EX31_RS10780 0.14 -0.8 74,684 + EX31_RS10780 0.14 -1.6 74,684 + EX31_RS10780 0.14 +0.6 74,684 + EX31_RS10780 0.14 -0.5 74,685 - EX31_RS10780 0.14 -0.1 74,685 - EX31_RS10780 0.14 -1.1 74,765 + EX31_RS10780 0.23 -0.5 74,765 + EX31_RS10780 0.23 -0.6 74,886 + EX31_RS10780 0.36 -1.7 74,886 + EX31_RS10780 0.36 -1.7 74,886 + EX31_RS10780 0.36 -0.6 74,886 + EX31_RS10780 0.36 -1.1 74,887 - EX31_RS10780 0.36 -0.8 74,889 + EX31_RS10780 0.36 -1.2 74,889 + EX31_RS10780 0.36 -2.1 74,889 + EX31_RS10780 0.36 -0.9 74,890 - EX31_RS10780 0.36 -1.1 74,890 - EX31_RS10780 0.36 -2.1 74,890 - EX31_RS10780 0.36 -0.5 74,909 + EX31_RS10780 0.38 -0.3 74,909 + EX31_RS10780 0.38 -0.8 74,909 + EX31_RS10780 0.38 -0.9 74,987 + EX31_RS10780 0.47 -1.7 75,036 + EX31_RS10780 0.52 -0.9 75,036 + EX31_RS10780 0.52 -1.6 75,036 + EX31_RS10780 0.52 -2.4 75,111 + EX31_RS10780 0.60 -0.2 75,111 + EX31_RS10780 0.60 -0.2 75,111 + EX31_RS10780 0.60 -0.9 75,111 + EX31_RS10780 0.60 +0.2 75,111 + EX31_RS10780 0.60 -2.1 75,111 + EX31_RS10780 0.60 -0.4 75,111 + EX31_RS10780 0.60 -1.2 75,126 + EX31_RS10780 0.62 -1.0 75,126 + EX31_RS10780 0.62 +0.1 75,300 + EX31_RS10780 0.81 -1.0 75,300 + EX31_RS10780 0.81 -0.6 75,300 + EX31_RS10780 0.81 -0.9 75,300 + EX31_RS10780 0.81 -1.0 75,302 + EX31_RS10780 0.81 -1.0 75,302 + EX31_RS10780 0.81 -1.1 75,302 + EX31_RS10780 0.81 -0.1 75,302 + EX31_RS10780 0.81 -0.8 75,303 - EX31_RS10780 0.81 -0.9 75,303 - EX31_RS10780 0.81 -0.7 75,329 + EX31_RS10780 0.84 -1.1 75,477 + -0.6 75,533 + +0.8 75,657 - +0.7 75,751 - -1.0 75,815 + -1.1 75,816 - -1.2 75,889 + -0.4 75,889 + +0.4 75,890 - -0.8 75,890 - +0.2 76,168 - +0.4 76,168 - +1.1 76,217 - +0.2 76,265 - -0.1 76,268 + +0.8 76,269 - -1.2 76,269 - +1.0 76,323 + -1.2
Or see this region's nucleotide sequence