Strain Fitness in Rahnella sp. WP5 around EX31_RS10670

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10665 and EX31_RS10670 are separated by 107 nucleotidesEX31_RS10670 and EX31_RS10675 are separated by 20 nucleotides EX31_RS10665: EX31_RS10665 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 50,427 to 51,407 _RS10665 EX31_RS10670: EX31_RS10670 - murein DD-endopeptidase MepM, at 51,515 to 52,849 _RS10670 EX31_RS10675: EX31_RS10675 - zinc ABC transporter substrate-binding protein ZnuA, at 52,870 to 53,802 _RS10675 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.618 kb on - strand, within EX31_RS10665at 50.648 kb on - strand, within EX31_RS10665at 50.648 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.838 kb on - strand, within EX31_RS10665at 50.888 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.185 kb on - strand, within EX31_RS10665at 51.185 kb on - strand, within EX31_RS10665at 51.259 kb on - strand, within EX31_RS10665at 51.259 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.287 kb on - strand, within EX31_RS10665at 51.344 kb on - strandat 51.344 kb on - strandat 51.344 kb on - strandat 51.344 kb on - strandat 51.344 kb on - strandat 51.369 kb on - strandat 51.376 kb on - strandat 51.420 kb on - strandat 51.437 kb on - strandat 51.443 kb on - strandat 51.443 kb on - strandat 51.457 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.561 kb on + strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.566 kb on - strandat 51.566 kb on - strandat 51.578 kb on - strandat 51.683 kb on - strand, within EX31_RS10670at 51.683 kb on - strand, within EX31_RS10670at 51.746 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.760 kb on - strand, within EX31_RS10670at 51.760 kb on - strand, within EX31_RS10670at 51.760 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.798 kb on + strand, within EX31_RS10670at 51.798 kb on + strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.803 kb on - strand, within EX31_RS10670at 51.947 kb on - strand, within EX31_RS10670at 52.021 kb on - strand, within EX31_RS10670at 52.021 kb on - strand, within EX31_RS10670at 52.028 kb on - strand, within EX31_RS10670at 52.050 kb on + strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.053 kb on + strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.076 kb on - strand, within EX31_RS10670at 52.076 kb on - strand, within EX31_RS10670at 52.076 kb on - strand, within EX31_RS10670at 52.196 kb on - strand, within EX31_RS10670at 52.349 kb on - strand, within EX31_RS10670at 52.349 kb on - strand, within EX31_RS10670at 52.351 kb on - strand, within EX31_RS10670at 52.351 kb on - strand, within EX31_RS10670at 52.351 kb on - strand, within EX31_RS10670at 52.388 kb on + strand, within EX31_RS10670at 52.389 kb on - strand, within EX31_RS10670at 52.406 kb on - strand, within EX31_RS10670at 52.442 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.523 kb on - strand, within EX31_RS10670at 52.542 kb on + strand, within EX31_RS10670at 52.542 kb on + strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.574 kb on - strand, within EX31_RS10670at 52.728 kb on + strandat 52.729 kb on - strandat 52.729 kb on - strandat 52.729 kb on - strandat 52.729 kb on - strandat 52.772 kb on - strandat 52.772 kb on - strandat 52.787 kb on - strandat 52.787 kb on - strandat 52.787 kb on - strandat 52.787 kb on - strandat 52.814 kb on - strandat 52.816 kb on - strandat 52.829 kb on - strandat 52.872 kb on - strandat 52.872 kb on - strandat 52.872 kb on - strandat 52.922 kb on + strandat 52.922 kb on + strandat 52.922 kb on + strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 53.005 kb on + strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.162 kb on + strand, within EX31_RS10675at 53.169 kb on - strand, within EX31_RS10675at 53.169 kb on - strand, within EX31_RS10675at 53.169 kb on - strand, within EX31_RS10675at 53.169 kb on - strand, within EX31_RS10675at 53.190 kb on - strand, within EX31_RS10675at 53.218 kb on - strand, within EX31_RS10675at 53.218 kb on - strand, within EX31_RS10675at 53.218 kb on - strand, within EX31_RS10675at 53.218 kb on - strand, within EX31_RS10675at 53.221 kb on - strand, within EX31_RS10675at 53.221 kb on - strand, within EX31_RS10675at 53.279 kb on - strand, within EX31_RS10675at 53.279 kb on - strand, within EX31_RS10675at 53.309 kb on - strand, within EX31_RS10675at 53.331 kb on + strand, within EX31_RS10675at 53.331 kb on + strand, within EX31_RS10675at 53.332 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.378 kb on + strand, within EX31_RS10675at 53.379 kb on - strand, within EX31_RS10675at 53.379 kb on - strand, within EX31_RS10675at 53.454 kb on + strand, within EX31_RS10675at 53.581 kb on - strand, within EX31_RS10675at 53.704 kb on + strand, within EX31_RS10675at 53.756 kb on - strandat 53.756 kb on - strandat 53.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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50,618 - EX31_RS10665 0.19 -0.7
50,648 - EX31_RS10665 0.23 -0.9
50,648 - EX31_RS10665 0.23 -0.1
50,723 - EX31_RS10665 0.30 -1.8
50,723 - EX31_RS10665 0.30 -1.6
50,723 - EX31_RS10665 0.30 +1.0
50,723 - EX31_RS10665 0.30 -1.0
50,838 - EX31_RS10665 0.42 -2.0
50,888 - EX31_RS10665 0.47 -0.5
51,147 - EX31_RS10665 0.73 +0.0
51,147 - EX31_RS10665 0.73 +0.8
51,147 - EX31_RS10665 0.73 -0.8
51,147 - EX31_RS10665 0.73 -1.4
51,147 - EX31_RS10665 0.73 -1.7
51,185 - EX31_RS10665 0.77 -0.9
51,185 - EX31_RS10665 0.77 +0.1
51,259 - EX31_RS10665 0.85 -1.3
51,259 - EX31_RS10665 0.85 -1.2
51,261 - EX31_RS10665 0.85 -1.0
51,261 - EX31_RS10665 0.85 -0.6
51,261 - EX31_RS10665 0.85 -1.4
51,261 - EX31_RS10665 0.85 +2.5
51,261 - EX31_RS10665 0.85 -2.0
51,287 - EX31_RS10665 0.88 -1.7
51,344 - +0.3
51,344 - +0.5
51,344 - -0.1
51,344 - -1.4
51,344 - +0.1
51,369 - -1.1
51,376 - +0.4
51,420 - +0.5
51,437 - +0.7
51,443 - +0.6
51,443 - -0.9
51,457 - -0.7
51,488 - +1.5
51,488 - -0.4
51,488 - -0.5
51,488 - -0.4
51,488 - +1.3
51,488 - +0.5
51,561 + +0.5
51,562 - -0.1
51,562 - -0.7
51,562 - -1.4
51,562 - +0.3
51,562 - +0.8
51,562 - -2.0
51,562 - -0.8
51,566 - -1.9
51,566 - -1.5
51,578 - +0.1
51,683 - EX31_RS10670 0.13 +1.1
51,683 - EX31_RS10670 0.13 +0.3
51,746 - EX31_RS10670 0.17 -0.2
51,758 - EX31_RS10670 0.18 -0.6
51,758 - EX31_RS10670 0.18 +1.7
51,758 - EX31_RS10670 0.18 +1.5
51,758 - EX31_RS10670 0.18 -0.2
51,758 - EX31_RS10670 0.18 +0.2
51,758 - EX31_RS10670 0.18 -0.1
51,758 - EX31_RS10670 0.18 +0.7
51,758 - EX31_RS10670 0.18 -0.0
51,758 - EX31_RS10670 0.18 +0.9
51,758 - EX31_RS10670 0.18 -0.3
51,760 - EX31_RS10670 0.18 +1.6
51,760 - EX31_RS10670 0.18 +0.8
51,760 - EX31_RS10670 0.18 -0.0
51,772 - EX31_RS10670 0.19 +1.2
51,772 - EX31_RS10670 0.19 +2.1
51,772 - EX31_RS10670 0.19 +1.0
51,772 - EX31_RS10670 0.19 -0.4
51,772 - EX31_RS10670 0.19 +1.3
51,772 - EX31_RS10670 0.19 +0.8
51,798 + EX31_RS10670 0.21 -0.1
51,798 + EX31_RS10670 0.21 +1.7
51,799 - EX31_RS10670 0.21 -0.4
51,799 - EX31_RS10670 0.21 -1.4
51,799 - EX31_RS10670 0.21 -0.0
51,799 - EX31_RS10670 0.21 +0.1
51,799 - EX31_RS10670 0.21 +0.4
51,799 - EX31_RS10670 0.21 +0.2
51,799 - EX31_RS10670 0.21 +1.7
51,799 - EX31_RS10670 0.21 -0.9
51,799 - EX31_RS10670 0.21 -0.6
51,799 - EX31_RS10670 0.21 +0.4
51,799 - EX31_RS10670 0.21 -0.3
51,799 - EX31_RS10670 0.21 -0.5
51,799 - EX31_RS10670 0.21 +1.3
51,799 - EX31_RS10670 0.21 -2.3
51,799 - EX31_RS10670 0.21 -0.5
51,799 - EX31_RS10670 0.21 +0.3
51,799 - EX31_RS10670 0.21 -0.7
51,803 - EX31_RS10670 0.22 +0.2
51,947 - EX31_RS10670 0.32 -1.2
52,021 - EX31_RS10670 0.38 -1.0
52,021 - EX31_RS10670 0.38 -0.8
52,028 - EX31_RS10670 0.38 +0.9
52,050 + EX31_RS10670 0.40 -1.0
52,051 - EX31_RS10670 0.40 -0.6
52,051 - EX31_RS10670 0.40 -0.6
52,051 - EX31_RS10670 0.40 +1.4
52,051 - EX31_RS10670 0.40 +1.7
52,053 + EX31_RS10670 0.40 +1.5
52,054 - EX31_RS10670 0.40 +0.1
52,054 - EX31_RS10670 0.40 -0.5
52,054 - EX31_RS10670 0.40 +0.6
52,054 - EX31_RS10670 0.40 +0.2
52,076 - EX31_RS10670 0.42 -0.4
52,076 - EX31_RS10670 0.42 +0.7
52,076 - EX31_RS10670 0.42 +0.3
52,196 - EX31_RS10670 0.51 +0.3
52,349 - EX31_RS10670 0.62 +0.2
52,349 - EX31_RS10670 0.62 +0.9
52,351 - EX31_RS10670 0.63 -0.7
52,351 - EX31_RS10670 0.63 +0.2
52,351 - EX31_RS10670 0.63 -0.9
52,388 + EX31_RS10670 0.65 -0.4
52,389 - EX31_RS10670 0.65 -1.4
52,406 - EX31_RS10670 0.67 +0.2
52,442 - EX31_RS10670 0.69 +0.1
52,446 - EX31_RS10670 0.70 +0.4
52,446 - EX31_RS10670 0.70 -0.7
52,446 - EX31_RS10670 0.70 -0.1
52,446 - EX31_RS10670 0.70 +0.7
52,446 - EX31_RS10670 0.70 +0.6
52,487 - EX31_RS10670 0.73 -1.5
52,487 - EX31_RS10670 0.73 +1.2
52,487 - EX31_RS10670 0.73 -0.1
52,487 - EX31_RS10670 0.73 -0.4
52,487 - EX31_RS10670 0.73 -1.4
52,487 - EX31_RS10670 0.73 +0.8
52,487 - EX31_RS10670 0.73 +0.1
52,523 - EX31_RS10670 0.76 -0.0
52,542 + EX31_RS10670 0.77 -0.4
52,542 + EX31_RS10670 0.77 +0.0
52,543 - EX31_RS10670 0.77 -1.5
52,543 - EX31_RS10670 0.77 +0.5
52,543 - EX31_RS10670 0.77 -0.7
52,543 - EX31_RS10670 0.77 +1.4
52,543 - EX31_RS10670 0.77 +0.2
52,543 - EX31_RS10670 0.77 +0.6
52,574 - EX31_RS10670 0.79 +0.3
52,728 + +0.1
52,729 - +1.1
52,729 - +0.2
52,729 - -1.1
52,729 - +0.2
52,772 - +0.6
52,772 - +1.5
52,787 - +1.0
52,787 - -0.2
52,787 - +1.8
52,787 - -0.2
52,814 - -0.0
52,816 - -0.2
52,829 - -0.0
52,872 - +0.8
52,872 - -0.4
52,872 - +0.0
52,922 + +0.1
52,922 + +1.6
52,922 + -1.8
52,923 - -1.0
52,923 - -0.8
52,923 - +0.1
52,923 - -1.3
52,923 - +0.9
52,923 - +1.3
52,923 - -0.1
53,005 + EX31_RS10675 0.14 -0.8
53,084 - EX31_RS10675 0.23 -0.1
53,084 - EX31_RS10675 0.23 -0.4
53,084 - EX31_RS10675 0.23 +0.9
53,084 - EX31_RS10675 0.23 -0.7
53,084 - EX31_RS10675 0.23 +1.4
53,084 - EX31_RS10675 0.23 +0.8
53,084 - EX31_RS10675 0.23 -0.7
53,084 - EX31_RS10675 0.23 +0.1
53,084 - EX31_RS10675 0.23 +1.5
53,084 - EX31_RS10675 0.23 +0.2
53,084 - EX31_RS10675 0.23 -0.3
53,162 + EX31_RS10675 0.31 +1.0
53,169 - EX31_RS10675 0.32 +0.4
53,169 - EX31_RS10675 0.32 +0.2
53,169 - EX31_RS10675 0.32 -0.4
53,169 - EX31_RS10675 0.32 -1.1
53,190 - EX31_RS10675 0.34 -0.2
53,218 - EX31_RS10675 0.37 +0.4
53,218 - EX31_RS10675 0.37 -0.7
53,218 - EX31_RS10675 0.37 -0.1
53,218 - EX31_RS10675 0.37 -0.6
53,221 - EX31_RS10675 0.38 -0.1
53,221 - EX31_RS10675 0.38 +1.1
53,279 - EX31_RS10675 0.44 -0.3
53,279 - EX31_RS10675 0.44 +1.7
53,309 - EX31_RS10675 0.47 +0.1
53,331 + EX31_RS10675 0.49 +0.5
53,331 + EX31_RS10675 0.49 -0.3
53,332 - EX31_RS10675 0.50 +0.7
53,374 - EX31_RS10675 0.54 -0.7
53,374 - EX31_RS10675 0.54 -0.5
53,374 - EX31_RS10675 0.54 -0.5
53,374 - EX31_RS10675 0.54 +1.8
53,374 - EX31_RS10675 0.54 +0.8
53,374 - EX31_RS10675 0.54 +0.0
53,374 - EX31_RS10675 0.54 -1.6
53,378 + EX31_RS10675 0.54 +1.7
53,379 - EX31_RS10675 0.55 -0.4
53,379 - EX31_RS10675 0.55 +0.0
53,454 + EX31_RS10675 0.63 -0.4
53,581 - EX31_RS10675 0.76 +0.6
53,704 + EX31_RS10675 0.89 -2.8
53,756 - +1.4
53,756 - +0.8
53,842 - -0.2

Or see this region's nucleotide sequence