Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09420 and EX31_RS09425 are separated by 514 nucleotides EX31_RS09425 and EX31_RS09430 overlap by 4 nucleotides EX31_RS09430 and EX31_RS09435 are separated by 70 nucleotides
EX31_RS09420: EX31_RS09420 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 90,640 to 94,614
_RS09420
EX31_RS09425: EX31_RS09425 - L-cystine ABC transporter ATP-binding protein YecC, at 95,129 to 95,881
_RS09425
EX31_RS09430: EX31_RS09430 - cystine ABC transporter permease, at 95,878 to 96,546
_RS09430
EX31_RS09435: EX31_RS09435 - cystine ABC transporter substrate-binding protein, at 96,617 to 97,417
_RS09435
Position (kb) 95
96 Strain fitness (log2 ratio) -1
0
1
2
3 at 94.197 kb on + strand, within EX31_RS09420 at 94.488 kb on + strand at 94.489 kb on - strand at 94.489 kb on - strand at 94.521 kb on + strand at 94.524 kb on + strand at 94.733 kb on + strand at 94.835 kb on + strand at 95.648 kb on - strand, within EX31_RS09425 at 95.734 kb on + strand, within EX31_RS09425 at 95.735 kb on - strand, within EX31_RS09425 at 95.810 kb on + strand at 95.875 kb on + strand at 95.875 kb on + strand at 95.960 kb on + strand, within EX31_RS09430 at 95.960 kb on + strand, within EX31_RS09430 at 95.960 kb on + strand, within EX31_RS09430 at 95.960 kb on + strand, within EX31_RS09430 at 95.981 kb on + strand, within EX31_RS09430 at 95.982 kb on - strand, within EX31_RS09430 at 95.982 kb on - strand, within EX31_RS09430 at 95.982 kb on - strand, within EX31_RS09430 at 96.168 kb on + strand, within EX31_RS09430 at 96.243 kb on - strand, within EX31_RS09430 at 96.243 kb on - strand, within EX31_RS09430 at 96.320 kb on + strand, within EX31_RS09430 at 96.323 kb on + strand, within EX31_RS09430 at 96.323 kb on + strand, within EX31_RS09430 at 96.323 kb on + strand, within EX31_RS09430 at 96.324 kb on - strand, within EX31_RS09430 at 96.375 kb on - strand, within EX31_RS09430 at 96.445 kb on - strand, within EX31_RS09430 at 96.535 kb on - strand at 96.575 kb on - strand at 96.618 kb on + strand at 96.618 kb on + strand at 96.619 kb on - strand at 96.619 kb on - strand at 96.619 kb on - strand at 96.619 kb on - strand at 96.703 kb on + strand, within EX31_RS09435 at 96.704 kb on - strand, within EX31_RS09435 at 96.787 kb on + strand, within EX31_RS09435 at 96.788 kb on - strand, within EX31_RS09435 at 96.788 kb on - strand, within EX31_RS09435 at 96.875 kb on - strand, within EX31_RS09435
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 94,197 + EX31_RS09420 0.89 +0.6 94,488 + -0.2 94,489 - +0.3 94,489 - -0.0 94,521 + -0.1 94,524 + -0.3 94,733 + +1.1 94,835 + +2.9 95,648 - EX31_RS09425 0.69 -1.3 95,734 + EX31_RS09425 0.80 -1.2 95,735 - EX31_RS09425 0.80 -0.3 95,810 + -0.7 95,875 + -0.4 95,875 + -0.2 95,960 + EX31_RS09430 0.12 -0.2 95,960 + EX31_RS09430 0.12 +0.8 95,960 + EX31_RS09430 0.12 +1.2 95,960 + EX31_RS09430 0.12 +1.3 95,981 + EX31_RS09430 0.15 +0.4 95,982 - EX31_RS09430 0.16 +0.4 95,982 - EX31_RS09430 0.16 -1.6 95,982 - EX31_RS09430 0.16 +0.2 96,168 + EX31_RS09430 0.43 -0.4 96,243 - EX31_RS09430 0.55 +1.7 96,243 - EX31_RS09430 0.55 +1.5 96,320 + EX31_RS09430 0.66 -0.5 96,323 + EX31_RS09430 0.67 +1.7 96,323 + EX31_RS09430 0.67 -0.9 96,323 + EX31_RS09430 0.67 -0.5 96,324 - EX31_RS09430 0.67 +1.0 96,375 - EX31_RS09430 0.74 +1.6 96,445 - EX31_RS09430 0.85 +0.5 96,535 - -0.0 96,575 - +0.7 96,618 + +0.9 96,618 + -1.0 96,619 - +0.9 96,619 - +0.2 96,619 - +0.8 96,619 - -0.0 96,703 + EX31_RS09435 0.11 -0.3 96,704 - EX31_RS09435 0.11 +0.3 96,787 + EX31_RS09435 0.21 -1.1 96,788 - EX31_RS09435 0.21 +0.8 96,788 - EX31_RS09435 0.21 +0.1 96,875 - EX31_RS09435 0.32 +0.2
Or see this region's nucleotide sequence