Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04060 and EX31_RS04065 are separated by 90 nucleotides EX31_RS04065 and EX31_RS04070 are separated by 548 nucleotides
EX31_RS04060: EX31_RS04060 - thymidine phosphorylase, at 334,793 to 336,121
_RS04060
EX31_RS04065: EX31_RS04065 - deoxyribose-phosphate aldolase, at 336,212 to 336,991
_RS04065
EX31_RS04070: EX31_RS04070 - deoxyribonuclease YjjV, at 337,540 to 338,325
_RS04070
Position (kb) 336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 335.422 kb on + strand, within EX31_RS04060 at 335.585 kb on - strand, within EX31_RS04060 at 335.619 kb on + strand, within EX31_RS04060 at 335.620 kb on - strand, within EX31_RS04060 at 335.620 kb on - strand, within EX31_RS04060 at 335.630 kb on - strand, within EX31_RS04060 at 335.756 kb on - strand, within EX31_RS04060 at 335.765 kb on - strand, within EX31_RS04060 at 335.799 kb on + strand, within EX31_RS04060 at 335.800 kb on - strand, within EX31_RS04060 at 335.800 kb on - strand, within EX31_RS04060 at 335.800 kb on - strand, within EX31_RS04060 at 335.800 kb on - strand, within EX31_RS04060 at 335.915 kb on + strand, within EX31_RS04060 at 335.971 kb on + strand, within EX31_RS04060 at 335.972 kb on - strand, within EX31_RS04060 at 335.982 kb on + strand, within EX31_RS04060 at 335.982 kb on + strand, within EX31_RS04060 at 335.982 kb on + strand, within EX31_RS04060 at 335.983 kb on - strand, within EX31_RS04060 at 335.983 kb on - strand, within EX31_RS04060 at 335.986 kb on + strand, within EX31_RS04060 at 335.986 kb on + strand, within EX31_RS04060 at 335.986 kb on + strand, within EX31_RS04060 at 335.987 kb on - strand, within EX31_RS04060 at 336.037 kb on + strand at 336.046 kb on + strand at 336.046 kb on + strand at 336.071 kb on + strand at 336.124 kb on + strand at 336.125 kb on - strand at 336.125 kb on - strand at 336.148 kb on + strand at 336.148 kb on + strand at 336.154 kb on + strand at 336.154 kb on + strand at 336.154 kb on + strand at 336.154 kb on + strand at 336.155 kb on - strand at 336.155 kb on - strand at 336.155 kb on - strand at 336.155 kb on - strand at 336.192 kb on + strand at 336.200 kb on + strand at 336.200 kb on + strand at 336.201 kb on - strand at 336.201 kb on - strand at 336.201 kb on - strand at 336.213 kb on + strand at 336.213 kb on + strand at 336.213 kb on + strand at 336.213 kb on + strand at 336.214 kb on - strand at 336.214 kb on - strand at 336.214 kb on - strand at 336.214 kb on - strand at 336.216 kb on + strand at 336.216 kb on + strand at 336.216 kb on + strand at 336.217 kb on - strand at 336.217 kb on - strand at 336.217 kb on - strand at 336.217 kb on - strand at 336.348 kb on + strand, within EX31_RS04065 at 336.349 kb on - strand, within EX31_RS04065 at 336.392 kb on - strand, within EX31_RS04065 at 336.479 kb on - strand, within EX31_RS04065 at 336.705 kb on + strand, within EX31_RS04065 at 336.705 kb on + strand, within EX31_RS04065 at 336.705 kb on + strand, within EX31_RS04065 at 336.706 kb on - strand, within EX31_RS04065 at 336.706 kb on - strand, within EX31_RS04065 at 336.754 kb on + strand, within EX31_RS04065 at 336.836 kb on - strand, within EX31_RS04065 at 336.836 kb on - strand, within EX31_RS04065 at 336.846 kb on + strand, within EX31_RS04065 at 336.846 kb on + strand, within EX31_RS04065 at 336.850 kb on + strand, within EX31_RS04065 at 336.850 kb on + strand, within EX31_RS04065 at 336.850 kb on + strand, within EX31_RS04065 at 336.850 kb on + strand, within EX31_RS04065 at 336.850 kb on + strand, within EX31_RS04065 at 336.851 kb on - strand, within EX31_RS04065 at 336.851 kb on - strand, within EX31_RS04065 at 336.851 kb on - strand, within EX31_RS04065 at 336.851 kb on - strand, within EX31_RS04065 at 336.941 kb on + strand at 336.980 kb on + strand at 336.981 kb on - strand at 336.991 kb on + strand at 336.991 kb on + strand at 336.991 kb on + strand at 336.991 kb on + strand at 336.991 kb on + strand at 336.992 kb on - strand at 336.992 kb on - strand at 336.992 kb on - strand at 336.992 kb on - strand at 336.992 kb on - strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.993 kb on + strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 336.994 kb on - strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.040 kb on + strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.041 kb on - strand at 337.120 kb on + strand at 337.121 kb on - strand at 337.129 kb on + strand at 337.130 kb on - strand at 337.130 kb on - strand at 337.148 kb on + strand at 337.148 kb on + strand at 337.148 kb on + strand at 337.148 kb on + strand at 337.148 kb on + strand at 337.149 kb on - strand at 337.149 kb on - strand at 337.209 kb on + strand at 337.210 kb on - strand at 337.210 kb on - strand at 337.244 kb on + strand at 337.244 kb on + strand at 337.244 kb on + strand at 337.244 kb on + strand at 337.244 kb on + strand at 337.244 kb on + strand at 337.245 kb on - strand at 337.285 kb on + strand at 337.285 kb on + strand at 337.307 kb on + strand at 337.307 kb on + strand at 337.307 kb on + strand at 337.307 kb on + strand at 337.307 kb on + strand at 337.307 kb on + strand at 337.307 kb on + strand at 337.308 kb on - strand at 337.308 kb on - strand at 337.311 kb on - strand at 337.317 kb on + strand at 337.317 kb on + strand at 337.318 kb on - strand at 337.318 kb on - strand at 337.318 kb on - strand at 337.318 kb on - strand at 337.327 kb on - strand at 337.338 kb on - strand at 337.338 kb on - strand at 337.340 kb on + strand at 337.340 kb on + strand at 337.340 kb on + strand at 337.340 kb on + strand at 337.340 kb on + strand at 337.340 kb on + strand at 337.341 kb on - strand at 337.341 kb on - strand at 337.341 kb on - strand at 337.341 kb on - strand at 337.341 kb on - strand at 337.341 kb on - strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.348 kb on + strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.349 kb on - strand at 337.410 kb on + strand at 337.410 kb on + strand at 337.489 kb on + strand at 337.489 kb on + strand at 337.490 kb on - strand at 337.557 kb on + strand at 337.665 kb on + strand, within EX31_RS04070 at 337.665 kb on + strand, within EX31_RS04070 at 337.782 kb on + strand, within EX31_RS04070
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 335,422 + EX31_RS04060 0.47 -0.6 335,585 - EX31_RS04060 0.60 -0.4 335,619 + EX31_RS04060 0.62 -1.2 335,620 - EX31_RS04060 0.62 -1.9 335,620 - EX31_RS04060 0.62 -2.0 335,630 - EX31_RS04060 0.63 -0.2 335,756 - EX31_RS04060 0.72 +0.3 335,765 - EX31_RS04060 0.73 +1.6 335,799 + EX31_RS04060 0.76 -0.2 335,800 - EX31_RS04060 0.76 +0.5 335,800 - EX31_RS04060 0.76 +0.1 335,800 - EX31_RS04060 0.76 -0.7 335,800 - EX31_RS04060 0.76 +0.1 335,915 + EX31_RS04060 0.84 +0.4 335,971 + EX31_RS04060 0.89 -0.8 335,972 - EX31_RS04060 0.89 -0.4 335,982 + EX31_RS04060 0.89 +0.7 335,982 + EX31_RS04060 0.89 -0.6 335,982 + EX31_RS04060 0.89 -1.5 335,983 - EX31_RS04060 0.90 +1.1 335,983 - EX31_RS04060 0.90 -0.4 335,986 + EX31_RS04060 0.90 -0.1 335,986 + EX31_RS04060 0.90 -0.3 335,986 + EX31_RS04060 0.90 -1.3 335,987 - EX31_RS04060 0.90 +1.2 336,037 + +0.3 336,046 + +0.3 336,046 + +0.2 336,071 + -1.0 336,124 + -0.0 336,125 - -0.2 336,125 - -0.0 336,148 + -0.3 336,148 + +0.6 336,154 + +1.3 336,154 + -0.2 336,154 + +0.6 336,154 + +0.3 336,155 - -0.1 336,155 - +0.9 336,155 - +0.8 336,155 - -0.3 336,192 + +0.4 336,200 + +1.1 336,200 + +0.7 336,201 - +1.1 336,201 - +0.9 336,201 - +1.5 336,213 + -0.4 336,213 + -1.0 336,213 + -1.1 336,213 + -1.3 336,214 - +1.4 336,214 - +0.0 336,214 - -0.4 336,214 - -0.2 336,216 + +1.0 336,216 + +1.5 336,216 + -0.8 336,217 - -0.7 336,217 - -0.3 336,217 - -2.0 336,217 - +1.1 336,348 + EX31_RS04065 0.17 +0.8 336,349 - EX31_RS04065 0.18 -0.2 336,392 - EX31_RS04065 0.23 -0.1 336,479 - EX31_RS04065 0.34 +1.4 336,705 + EX31_RS04065 0.63 +0.2 336,705 + EX31_RS04065 0.63 -0.2 336,705 + EX31_RS04065 0.63 -0.2 336,706 - EX31_RS04065 0.63 +0.8 336,706 - EX31_RS04065 0.63 -1.3 336,754 + EX31_RS04065 0.69 -1.3 336,836 - EX31_RS04065 0.80 -0.3 336,836 - EX31_RS04065 0.80 -0.2 336,846 + EX31_RS04065 0.81 +1.2 336,846 + EX31_RS04065 0.81 +1.6 336,850 + EX31_RS04065 0.82 -0.3 336,850 + EX31_RS04065 0.82 +0.1 336,850 + EX31_RS04065 0.82 +0.6 336,850 + EX31_RS04065 0.82 -3.2 336,850 + EX31_RS04065 0.82 +0.1 336,851 - EX31_RS04065 0.82 +0.2 336,851 - EX31_RS04065 0.82 +1.0 336,851 - EX31_RS04065 0.82 -0.1 336,851 - EX31_RS04065 0.82 -0.1 336,941 + -0.2 336,980 + +0.7 336,981 - -0.5 336,991 + -1.6 336,991 + -0.7 336,991 + -1.3 336,991 + +0.6 336,991 + -0.0 336,992 - -0.2 336,992 - +0.0 336,992 - -0.6 336,992 - +1.1 336,992 - +0.7 336,993 + +0.7 336,993 + -0.4 336,993 + -1.1 336,993 + +1.3 336,993 + +0.1 336,993 + +0.9 336,993 + +0.0 336,993 + -0.1 336,993 + -0.7 336,993 + -0.4 336,993 + +0.4 336,993 + -1.1 336,993 + +0.1 336,994 - +1.2 336,994 - -0.7 336,994 - +1.4 336,994 - -0.2 336,994 - -0.0 336,994 - -0.1 336,994 - +0.9 336,994 - -1.1 336,994 - -0.9 336,994 - +0.8 336,994 - -0.5 336,994 - -0.2 337,040 + +0.4 337,040 + -0.2 337,040 + -0.9 337,040 + +0.2 337,040 + +1.0 337,040 + -0.9 337,040 + -0.6 337,040 + -0.1 337,040 + +0.0 337,040 + -0.3 337,040 + -0.2 337,041 - -0.4 337,041 - +1.7 337,041 - -0.6 337,041 - -0.0 337,041 - +0.6 337,041 - +0.2 337,041 - -0.1 337,041 - +0.6 337,041 - -0.7 337,041 - +0.6 337,041 - +0.1 337,041 - +0.3 337,120 + +0.3 337,121 - -2.1 337,129 + +0.5 337,130 - +1.2 337,130 - -0.4 337,148 + -0.6 337,148 + +0.1 337,148 + +0.3 337,148 + -0.2 337,148 + +0.3 337,149 - +0.3 337,149 - +1.0 337,209 + -0.2 337,210 - -2.2 337,210 - -0.3 337,244 + -0.0 337,244 + +0.4 337,244 + -1.0 337,244 + +1.9 337,244 + +0.7 337,244 + -0.5 337,245 - -0.9 337,285 + -0.0 337,285 + -0.6 337,307 + -0.4 337,307 + -2.2 337,307 + +0.4 337,307 + +0.2 337,307 + +0.3 337,307 + -0.7 337,307 + +0.9 337,308 - -0.7 337,308 - -0.3 337,311 - +1.0 337,317 + +0.7 337,317 + +1.0 337,318 - -0.3 337,318 - -0.2 337,318 - -1.4 337,318 - +1.2 337,327 - +0.9 337,338 - +1.3 337,338 - +1.4 337,340 + -0.6 337,340 + -0.7 337,340 + -0.6 337,340 + -0.6 337,340 + -0.9 337,340 + +1.9 337,341 - -0.7 337,341 - +1.9 337,341 - +0.9 337,341 - -0.9 337,341 - +1.1 337,341 - +0.2 337,348 + +0.5 337,348 + -0.3 337,348 + -0.2 337,348 + +0.4 337,348 + -0.6 337,348 + +0.1 337,348 + +0.2 337,348 + +0.0 337,348 + +1.0 337,348 + +1.6 337,348 + -0.3 337,348 + +0.2 337,348 + +0.1 337,348 + +0.1 337,348 + +0.5 337,348 + +1.2 337,349 - -0.8 337,349 - +0.9 337,349 - +0.4 337,349 - +1.3 337,349 - -0.3 337,349 - +0.0 337,349 - +0.3 337,349 - -0.0 337,349 - +0.4 337,349 - +1.0 337,349 - -0.9 337,349 - -0.5 337,349 - -0.7 337,349 - +0.8 337,349 - +0.2 337,410 + +1.1 337,410 + +0.5 337,489 + +0.9 337,489 + -0.3 337,490 - -0.0 337,557 + +1.5 337,665 + EX31_RS04070 0.16 +1.0 337,665 + EX31_RS04070 0.16 -0.2 337,782 + EX31_RS04070 0.31 +0.8
Or see this region's nucleotide sequence