Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03190 and EX31_RS03195 are separated by 107 nucleotides EX31_RS03195 and EX31_RS03200 are separated by 103 nucleotides EX31_RS03200 and EX31_RS03205 are separated by 186 nucleotides
EX31_RS03190: EX31_RS03190 - hypothetical protein, at 124,208 to 124,453
_RS03190
EX31_RS03195: EX31_RS03195 - iron-sulfur cluster insertion protein ErpA, at 124,561 to 124,905
_RS03195
EX31_RS03200: EX31_RS03200 - H(+)/Cl(-) exchange transporter ClcA, at 125,009 to 126,472
_RS03200
EX31_RS03205: EX31_RS03205 - glutamate-1-semialdehyde 2,1-aminomutase, at 126,659 to 127,939
_RS03205
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 124.014 kb on - strand at 124.014 kb on - strand at 124.083 kb on + strand at 124.186 kb on + strand at 124.186 kb on + strand at 124.186 kb on + strand at 124.186 kb on + strand at 124.187 kb on - strand at 124.187 kb on - strand at 124.187 kb on - strand at 124.187 kb on - strand at 124.200 kb on + strand at 124.200 kb on + strand at 124.201 kb on - strand at 124.201 kb on - strand at 124.206 kb on + strand at 124.207 kb on - strand at 124.207 kb on - strand at 124.221 kb on + strand at 124.221 kb on + strand at 124.222 kb on - strand at 124.222 kb on - strand at 124.381 kb on + strand, within EX31_RS03190 at 124.381 kb on + strand, within EX31_RS03190 at 124.399 kb on + strand, within EX31_RS03190 at 124.399 kb on + strand, within EX31_RS03190 at 124.400 kb on - strand, within EX31_RS03190 at 124.475 kb on - strand at 124.559 kb on - strand at 124.559 kb on - strand at 124.562 kb on + strand at 124.562 kb on + strand at 124.563 kb on - strand at 124.563 kb on - strand at 124.563 kb on - strand at 124.563 kb on - strand at 124.563 kb on - strand at 124.567 kb on - strand at 124.569 kb on + strand at 124.569 kb on + strand at 124.570 kb on - strand at 124.570 kb on - strand at 124.570 kb on - strand at 124.975 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.979 kb on + strand at 124.979 kb on + strand at 124.979 kb on + strand at 124.980 kb on - strand at 124.980 kb on - strand at 124.980 kb on - strand at 124.980 kb on - strand at 124.980 kb on - strand at 124.980 kb on - strand at 124.980 kb on - strand at 124.980 kb on - strand at 124.980 kb on - strand at 124.987 kb on - strand at 124.991 kb on + strand at 124.991 kb on + strand at 124.991 kb on + strand at 124.991 kb on + strand at 124.991 kb on + strand at 124.991 kb on + strand at 124.991 kb on + strand at 124.991 kb on + strand at 124.991 kb on + strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.992 kb on - strand at 124.994 kb on - strand at 124.994 kb on - strand at 124.994 kb on - strand at 125.002 kb on + strand at 125.003 kb on - strand at 125.003 kb on - strand at 125.003 kb on - strand at 125.014 kb on + strand at 125.014 kb on + strand at 125.015 kb on - strand at 125.015 kb on - strand at 125.044 kb on + strand at 125.045 kb on - strand at 125.045 kb on - strand at 125.108 kb on + strand at 125.108 kb on + strand at 125.133 kb on + strand at 125.133 kb on + strand at 125.133 kb on + strand at 125.133 kb on + strand at 125.134 kb on - strand at 125.134 kb on - strand at 125.134 kb on - strand at 125.185 kb on + strand, within EX31_RS03200 at 125.186 kb on - strand, within EX31_RS03200 at 125.186 kb on - strand, within EX31_RS03200 at 125.186 kb on - strand, within EX31_RS03200 at 125.186 kb on - strand, within EX31_RS03200 at 125.186 kb on - strand, within EX31_RS03200 at 125.186 kb on - strand, within EX31_RS03200 at 125.211 kb on + strand, within EX31_RS03200 at 125.211 kb on + strand, within EX31_RS03200 at 125.212 kb on - strand, within EX31_RS03200 at 125.277 kb on - strand, within EX31_RS03200 at 125.322 kb on + strand, within EX31_RS03200 at 125.323 kb on - strand, within EX31_RS03200 at 125.437 kb on + strand, within EX31_RS03200 at 125.437 kb on + strand, within EX31_RS03200 at 125.484 kb on + strand, within EX31_RS03200 at 125.484 kb on + strand, within EX31_RS03200 at 125.633 kb on - strand, within EX31_RS03200 at 125.703 kb on + strand, within EX31_RS03200 at 125.703 kb on + strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.704 kb on - strand, within EX31_RS03200 at 125.716 kb on + strand, within EX31_RS03200 at 125.716 kb on + strand, within EX31_RS03200 at 125.717 kb on - strand, within EX31_RS03200 at 125.717 kb on - strand, within EX31_RS03200 at 125.776 kb on + strand, within EX31_RS03200 at 125.896 kb on + strand, within EX31_RS03200 at 125.896 kb on + strand, within EX31_RS03200 at 126.168 kb on + strand, within EX31_RS03200 at 126.183 kb on + strand, within EX31_RS03200 at 126.184 kb on - strand, within EX31_RS03200 at 126.184 kb on - strand, within EX31_RS03200 at 126.184 kb on - strand, within EX31_RS03200 at 126.186 kb on + strand, within EX31_RS03200 at 126.487 kb on + strand at 126.499 kb on + strand at 126.518 kb on + strand at 126.518 kb on + strand at 126.582 kb on - strand at 126.600 kb on - strand at 126.614 kb on - strand at 126.629 kb on + strand at 126.629 kb on + strand at 126.629 kb on + strand at 126.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 124,014 - -0.1 124,014 - +0.8 124,083 + -0.8 124,186 + +0.4 124,186 + -0.2 124,186 + +1.4 124,186 + +0.3 124,187 - +0.1 124,187 - -0.3 124,187 - -0.6 124,187 - +0.9 124,200 + -0.5 124,200 + -0.5 124,201 - -0.6 124,201 - +0.9 124,206 + -0.4 124,207 - -1.7 124,207 - -0.5 124,221 + +0.8 124,221 + +0.1 124,222 - -1.2 124,222 - +0.0 124,381 + EX31_RS03190 0.70 +1.4 124,381 + EX31_RS03190 0.70 -0.0 124,399 + EX31_RS03190 0.78 +0.7 124,399 + EX31_RS03190 0.78 +0.3 124,400 - EX31_RS03190 0.78 -0.9 124,475 - +0.2 124,559 - +1.5 124,559 - +0.0 124,562 + -2.1 124,562 + -2.0 124,563 - +0.8 124,563 - -1.0 124,563 - -0.6 124,563 - +0.8 124,563 - -0.4 124,567 - -2.1 124,569 + -1.3 124,569 + -0.1 124,570 - +0.1 124,570 - -0.4 124,570 - -2.6 124,975 - -0.5 124,978 - -0.3 124,978 - -0.3 124,978 - -1.2 124,978 - -0.8 124,978 - -0.2 124,978 - -0.6 124,978 - -1.0 124,978 - +2.2 124,978 - -0.8 124,978 - +0.1 124,979 + -1.3 124,979 + -1.0 124,979 + -0.7 124,980 - -0.4 124,980 - -0.1 124,980 - -0.9 124,980 - -0.5 124,980 - +0.0 124,980 - +0.3 124,980 - -0.2 124,980 - +0.1 124,980 - +0.8 124,987 - -0.0 124,991 + -0.8 124,991 + -1.6 124,991 + +0.1 124,991 + -0.1 124,991 + -1.4 124,991 + -0.1 124,991 + -0.9 124,991 + -0.8 124,991 + -1.6 124,992 - -0.5 124,992 - -0.8 124,992 - -0.3 124,992 - -0.7 124,992 - +0.8 124,992 - -0.3 124,992 - -0.6 124,992 - +0.2 124,992 - +1.0 124,992 - +0.9 124,992 - +0.5 124,992 - -0.5 124,992 - +0.2 124,994 - -0.2 124,994 - -0.3 124,994 - +0.7 125,002 + -0.0 125,003 - -0.3 125,003 - -0.1 125,003 - +0.9 125,014 + +0.1 125,014 + +0.1 125,015 - +0.2 125,015 - -1.7 125,044 + -0.1 125,045 - +0.2 125,045 - -0.1 125,108 + -1.0 125,108 + -0.3 125,133 + -1.2 125,133 + +0.2 125,133 + -0.3 125,133 + -1.2 125,134 - +0.7 125,134 - -1.3 125,134 - -0.1 125,185 + EX31_RS03200 0.12 -1.4 125,186 - EX31_RS03200 0.12 -0.3 125,186 - EX31_RS03200 0.12 -0.3 125,186 - EX31_RS03200 0.12 +0.8 125,186 - EX31_RS03200 0.12 -0.9 125,186 - EX31_RS03200 0.12 -1.6 125,186 - EX31_RS03200 0.12 +0.5 125,211 + EX31_RS03200 0.14 +0.7 125,211 + EX31_RS03200 0.14 -1.2 125,212 - EX31_RS03200 0.14 -0.6 125,277 - EX31_RS03200 0.18 -1.5 125,322 + EX31_RS03200 0.21 -0.7 125,323 - EX31_RS03200 0.21 -0.3 125,437 + EX31_RS03200 0.29 -2.3 125,437 + EX31_RS03200 0.29 +0.5 125,484 + EX31_RS03200 0.32 -0.5 125,484 + EX31_RS03200 0.32 -0.3 125,633 - EX31_RS03200 0.43 -0.3 125,703 + EX31_RS03200 0.47 +1.7 125,703 + EX31_RS03200 0.47 -2.2 125,704 - EX31_RS03200 0.47 +0.8 125,704 - EX31_RS03200 0.47 -0.4 125,704 - EX31_RS03200 0.47 -0.4 125,704 - EX31_RS03200 0.47 -1.3 125,704 - EX31_RS03200 0.47 +0.8 125,704 - EX31_RS03200 0.47 +0.1 125,704 - EX31_RS03200 0.47 +0.5 125,704 - EX31_RS03200 0.47 -1.9 125,704 - EX31_RS03200 0.47 -0.2 125,704 - EX31_RS03200 0.47 -1.0 125,704 - EX31_RS03200 0.47 -1.6 125,716 + EX31_RS03200 0.48 +0.4 125,716 + EX31_RS03200 0.48 -0.8 125,717 - EX31_RS03200 0.48 -1.3 125,717 - EX31_RS03200 0.48 -0.1 125,776 + EX31_RS03200 0.52 -1.2 125,896 + EX31_RS03200 0.61 -1.5 125,896 + EX31_RS03200 0.61 +0.2 126,168 + EX31_RS03200 0.79 -0.5 126,183 + EX31_RS03200 0.80 -1.1 126,184 - EX31_RS03200 0.80 -1.5 126,184 - EX31_RS03200 0.80 -1.2 126,184 - EX31_RS03200 0.80 +0.1 126,186 + EX31_RS03200 0.80 -2.0 126,487 + -0.2 126,499 + -1.3 126,518 + -1.3 126,518 + +1.5 126,582 - +0.5 126,600 - +0.1 126,614 - +1.2 126,629 + +0.1 126,629 + -1.0 126,629 + +0.3 126,664 + +0.6
Or see this region's nucleotide sequence