Strain Fitness in Rahnella sp. WP5 around EX31_RS00850

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS00845 and EX31_RS00850 are separated by 534 nucleotidesEX31_RS00850 and EX31_RS00855 are separated by 121 nucleotides EX31_RS00845: EX31_RS00845 - ABC transporter substrate-binding protein, at 183,247 to 184,374 _RS00845 EX31_RS00850: EX31_RS00850 - GntR family transcriptional regulator, at 184,909 to 185,610 _RS00850 EX31_RS00855: EX31_RS00855 - amidohydrolase, at 185,732 to 186,910 _RS00855 Position (kb) 184 185 186Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 184.028 kb on + strand, within EX31_RS00845at 184.029 kb on - strand, within EX31_RS00845at 184.099 kb on + strand, within EX31_RS00845at 184.104 kb on + strand, within EX31_RS00845at 184.104 kb on + strand, within EX31_RS00845at 184.104 kb on + strand, within EX31_RS00845at 184.105 kb on - strand, within EX31_RS00845at 184.105 kb on - strand, within EX31_RS00845at 184.162 kb on + strand, within EX31_RS00845at 184.163 kb on - strand, within EX31_RS00845at 184.163 kb on - strand, within EX31_RS00845at 184.327 kb on - strandat 184.327 kb on - strandat 184.455 kb on - strandat 184.557 kb on + strandat 184.557 kb on + strandat 184.829 kb on - strandat 184.829 kb on - strandat 184.832 kb on + strandat 184.993 kb on + strand, within EX31_RS00850at 184.994 kb on - strand, within EX31_RS00850at 185.167 kb on + strand, within EX31_RS00850at 185.184 kb on + strand, within EX31_RS00850at 185.186 kb on + strand, within EX31_RS00850at 185.186 kb on + strand, within EX31_RS00850at 185.186 kb on + strand, within EX31_RS00850at 185.187 kb on - strand, within EX31_RS00850at 185.345 kb on + strand, within EX31_RS00850at 185.345 kb on + strand, within EX31_RS00850at 185.352 kb on + strand, within EX31_RS00850at 185.364 kb on + strand, within EX31_RS00850at 185.365 kb on - strand, within EX31_RS00850at 185.489 kb on + strand, within EX31_RS00850at 185.489 kb on + strand, within EX31_RS00850at 185.489 kb on + strand, within EX31_RS00850at 185.489 kb on + strand, within EX31_RS00850at 185.535 kb on + strand, within EX31_RS00850at 185.625 kb on + strandat 185.625 kb on + strandat 185.652 kb on + strandat 185.652 kb on + strandat 185.653 kb on - strandat 185.665 kb on + strandat 185.729 kb on + strandat 185.729 kb on + strandat 185.729 kb on + strandat 185.730 kb on - strandat 185.730 kb on - strandat 185.730 kb on - strandat 185.731 kb on + strandat 185.731 kb on + strandat 185.731 kb on + strandat 185.732 kb on - strandat 185.732 kb on - strandat 185.756 kb on - strandat 185.858 kb on + strand, within EX31_RS00855at 185.858 kb on + strand, within EX31_RS00855at 185.858 kb on + strand, within EX31_RS00855at 185.858 kb on + strand, within EX31_RS00855at 185.858 kb on + strand, within EX31_RS00855at 185.951 kb on - strand, within EX31_RS00855at 185.961 kb on + strand, within EX31_RS00855at 186.040 kb on + strand, within EX31_RS00855at 186.104 kb on + strand, within EX31_RS00855at 186.104 kb on + strand, within EX31_RS00855at 186.104 kb on + strand, within EX31_RS00855at 186.104 kb on + strand, within EX31_RS00855at 186.104 kb on + strand, within EX31_RS00855at 186.104 kb on + strand, within EX31_RS00855at 186.150 kb on + strand, within EX31_RS00855at 186.453 kb on + strand, within EX31_RS00855at 186.453 kb on + strand, within EX31_RS00855at 186.453 kb on + strand, within EX31_RS00855at 186.454 kb on - strand, within EX31_RS00855at 186.454 kb on - strand, within EX31_RS00855at 186.454 kb on - strand, within EX31_RS00855at 186.546 kb on - strand, within EX31_RS00855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
184,028 + EX31_RS00845 0.69 -0.9
184,029 - EX31_RS00845 0.69 +0.0
184,099 + EX31_RS00845 0.76 +0.8
184,104 + EX31_RS00845 0.76 -0.6
184,104 + EX31_RS00845 0.76 -1.0
184,104 + EX31_RS00845 0.76 +1.6
184,105 - EX31_RS00845 0.76 +1.0
184,105 - EX31_RS00845 0.76 -0.8
184,162 + EX31_RS00845 0.81 -1.4
184,163 - EX31_RS00845 0.81 -0.9
184,163 - EX31_RS00845 0.81 +0.1
184,327 - +0.6
184,327 - +0.5
184,455 - +0.7
184,557 + -0.9
184,557 + +0.7
184,829 - -0.5
184,829 - -0.3
184,832 + +0.7
184,993 + EX31_RS00850 0.12 +0.5
184,994 - EX31_RS00850 0.12 -1.8
185,167 + EX31_RS00850 0.37 +1.0
185,184 + EX31_RS00850 0.39 +0.4
185,186 + EX31_RS00850 0.39 -0.5
185,186 + EX31_RS00850 0.39 -0.8
185,186 + EX31_RS00850 0.39 -0.3
185,187 - EX31_RS00850 0.40 -0.5
185,345 + EX31_RS00850 0.62 +1.8
185,345 + EX31_RS00850 0.62 -0.1
185,352 + EX31_RS00850 0.63 -1.5
185,364 + EX31_RS00850 0.65 +0.8
185,365 - EX31_RS00850 0.65 +1.2
185,489 + EX31_RS00850 0.83 +0.0
185,489 + EX31_RS00850 0.83 -0.2
185,489 + EX31_RS00850 0.83 -0.3
185,489 + EX31_RS00850 0.83 +1.6
185,535 + EX31_RS00850 0.89 -0.2
185,625 + +0.2
185,625 + +1.9
185,652 + +1.0
185,652 + -0.1
185,653 - +0.3
185,665 + -2.8
185,729 + +0.7
185,729 + +1.3
185,729 + +0.7
185,730 - +1.0
185,730 - +0.2
185,730 - +0.7
185,731 + +2.2
185,731 + +1.4
185,731 + -0.4
185,732 - +1.2
185,732 - -1.2
185,756 - -0.0
185,858 + EX31_RS00855 0.11 +1.2
185,858 + EX31_RS00855 0.11 -1.3
185,858 + EX31_RS00855 0.11 -0.5
185,858 + EX31_RS00855 0.11 -0.5
185,858 + EX31_RS00855 0.11 -0.8
185,951 - EX31_RS00855 0.19 -1.1
185,961 + EX31_RS00855 0.19 +1.4
186,040 + EX31_RS00855 0.26 -0.8
186,104 + EX31_RS00855 0.32 -1.0
186,104 + EX31_RS00855 0.32 -1.5
186,104 + EX31_RS00855 0.32 +0.2
186,104 + EX31_RS00855 0.32 -0.3
186,104 + EX31_RS00855 0.32 -0.0
186,104 + EX31_RS00855 0.32 +0.2
186,150 + EX31_RS00855 0.35 -0.8
186,453 + EX31_RS00855 0.61 -0.8
186,453 + EX31_RS00855 0.61 -0.4
186,453 + EX31_RS00855 0.61 -0.6
186,454 - EX31_RS00855 0.61 -1.4
186,454 - EX31_RS00855 0.61 +0.4
186,454 - EX31_RS00855 0.61 -1.4
186,546 - EX31_RS00855 0.69 -1.9

Or see this region's nucleotide sequence