Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00740 and EX31_RS00745 overlap by 4 nucleotides EX31_RS00745 and EX31_RS00755 are separated by 639 nucleotides
EX31_RS00740: EX31_RS00740 - malto-oligosyltrehalose synthase, at 159,312 to 161,822
_RS00740
EX31_RS00745: EX31_RS00745 - malto-oligosyltrehalose trehalohydrolase, at 161,819 to 163,606
_RS00745
EX31_RS00755: EX31_RS00755 - ABC transporter substrate-binding protein, at 164,246 to 165,352
_RS00755
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 160.862 kb on - strand, within EX31_RS00740 at 161.003 kb on + strand, within EX31_RS00740 at 161.005 kb on + strand, within EX31_RS00740 at 161.005 kb on + strand, within EX31_RS00740 at 161.005 kb on + strand, within EX31_RS00740 at 161.005 kb on + strand, within EX31_RS00740 at 161.005 kb on + strand, within EX31_RS00740 at 161.005 kb on + strand, within EX31_RS00740 at 161.006 kb on - strand, within EX31_RS00740 at 161.006 kb on - strand, within EX31_RS00740 at 161.006 kb on - strand, within EX31_RS00740 at 161.006 kb on - strand, within EX31_RS00740 at 161.006 kb on - strand, within EX31_RS00740 at 161.044 kb on + strand, within EX31_RS00740 at 161.045 kb on - strand, within EX31_RS00740 at 161.136 kb on - strand, within EX31_RS00740 at 161.148 kb on + strand, within EX31_RS00740 at 161.262 kb on + strand, within EX31_RS00740 at 161.262 kb on + strand, within EX31_RS00740 at 161.335 kb on + strand, within EX31_RS00740 at 161.335 kb on + strand, within EX31_RS00740 at 161.335 kb on + strand, within EX31_RS00740 at 161.335 kb on + strand, within EX31_RS00740 at 161.335 kb on + strand, within EX31_RS00740 at 161.335 kb on + strand, within EX31_RS00740 at 161.335 kb on + strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.336 kb on - strand, within EX31_RS00740 at 161.347 kb on + strand, within EX31_RS00740 at 161.483 kb on - strand, within EX31_RS00740 at 161.525 kb on + strand, within EX31_RS00740 at 161.526 kb on - strand, within EX31_RS00740 at 161.607 kb on - strand at 161.669 kb on - strand at 161.713 kb on + strand at 161.739 kb on + strand at 161.750 kb on + strand at 161.951 kb on + strand at 161.987 kb on - strand at 161.987 kb on - strand at 162.063 kb on + strand, within EX31_RS00745 at 162.064 kb on - strand, within EX31_RS00745 at 162.175 kb on + strand, within EX31_RS00745 at 162.317 kb on - strand, within EX31_RS00745 at 162.525 kb on + strand, within EX31_RS00745 at 162.588 kb on + strand, within EX31_RS00745 at 162.591 kb on + strand, within EX31_RS00745 at 162.591 kb on + strand, within EX31_RS00745 at 162.592 kb on - strand, within EX31_RS00745 at 162.592 kb on - strand, within EX31_RS00745 at 162.592 kb on - strand, within EX31_RS00745 at 162.592 kb on - strand, within EX31_RS00745 at 162.685 kb on + strand, within EX31_RS00745 at 162.695 kb on + strand, within EX31_RS00745 at 162.883 kb on + strand, within EX31_RS00745 at 162.885 kb on + strand, within EX31_RS00745 at 162.885 kb on + strand, within EX31_RS00745 at 162.885 kb on + strand, within EX31_RS00745 at 162.885 kb on + strand, within EX31_RS00745 at 162.886 kb on - strand, within EX31_RS00745 at 162.978 kb on + strand, within EX31_RS00745 at 162.979 kb on - strand, within EX31_RS00745 at 162.979 kb on - strand, within EX31_RS00745 at 163.083 kb on + strand, within EX31_RS00745 at 163.083 kb on + strand, within EX31_RS00745 at 163.084 kb on - strand, within EX31_RS00745 at 163.101 kb on + strand, within EX31_RS00745 at 163.102 kb on - strand, within EX31_RS00745 at 163.120 kb on - strand, within EX31_RS00745 at 163.195 kb on - strand, within EX31_RS00745 at 163.314 kb on + strand, within EX31_RS00745 at 163.409 kb on - strand, within EX31_RS00745 at 163.409 kb on - strand, within EX31_RS00745 at 163.409 kb on - strand, within EX31_RS00745 at 163.410 kb on + strand, within EX31_RS00745 at 163.411 kb on - strand, within EX31_RS00745 at 163.411 kb on - strand, within EX31_RS00745 at 163.411 kb on - strand, within EX31_RS00745 at 163.612 kb on + strand at 163.625 kb on - strand at 163.659 kb on - strand at 163.702 kb on + strand at 163.702 kb on + strand at 163.703 kb on - strand at 163.703 kb on - strand at 163.703 kb on - strand at 163.858 kb on + strand at 163.861 kb on - strand at 163.872 kb on - strand at 163.904 kb on - strand at 163.908 kb on - strand at 163.924 kb on + strand at 163.925 kb on - strand at 163.944 kb on + strand at 163.944 kb on + strand at 163.944 kb on + strand at 163.944 kb on + strand at 163.944 kb on + strand at 163.945 kb on - strand at 163.945 kb on - strand at 163.945 kb on - strand at 163.948 kb on + strand at 163.948 kb on + strand at 163.975 kb on - strand at 163.975 kb on - strand at 163.976 kb on + strand at 163.976 kb on + strand at 163.976 kb on + strand at 163.976 kb on + strand at 163.977 kb on - strand at 163.977 kb on - strand at 163.977 kb on - strand at 163.977 kb on - strand at 164.009 kb on + strand at 164.009 kb on + strand at 164.010 kb on - strand at 164.010 kb on - strand at 164.085 kb on - strand at 164.085 kb on - strand at 164.106 kb on + strand at 164.107 kb on - strand at 164.107 kb on - strand at 164.107 kb on - strand at 164.138 kb on + strand at 164.158 kb on + strand at 164.167 kb on + strand at 164.168 kb on - strand at 164.168 kb on - strand at 164.234 kb on + strand at 164.254 kb on - strand at 164.254 kb on - strand at 164.272 kb on + strand at 164.290 kb on - strand at 164.341 kb on + strand at 164.353 kb on - strand at 164.399 kb on + strand, within EX31_RS00755 at 164.399 kb on + strand, within EX31_RS00755 at 164.400 kb on - strand, within EX31_RS00755 at 164.401 kb on + strand, within EX31_RS00755 at 164.401 kb on + strand, within EX31_RS00755 at 164.402 kb on - strand, within EX31_RS00755 at 164.434 kb on + strand, within EX31_RS00755 at 164.434 kb on + strand, within EX31_RS00755 at 164.443 kb on + strand, within EX31_RS00755 at 164.488 kb on + strand, within EX31_RS00755 at 164.488 kb on + strand, within EX31_RS00755 at 164.488 kb on + strand, within EX31_RS00755 at 164.489 kb on - strand, within EX31_RS00755 at 164.489 kb on - strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.495 kb on - strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.498 kb on - strand, within EX31_RS00755 at 164.498 kb on - strand, within EX31_RS00755
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 160,862 - EX31_RS00740 0.62 +1.9 161,003 + EX31_RS00740 0.67 +1.0 161,005 + EX31_RS00740 0.67 -0.1 161,005 + EX31_RS00740 0.67 +0.5 161,005 + EX31_RS00740 0.67 -0.4 161,005 + EX31_RS00740 0.67 -0.9 161,005 + EX31_RS00740 0.67 +0.1 161,005 + EX31_RS00740 0.67 -0.5 161,006 - EX31_RS00740 0.67 -1.6 161,006 - EX31_RS00740 0.67 -0.4 161,006 - EX31_RS00740 0.67 +1.4 161,006 - EX31_RS00740 0.67 -0.2 161,006 - EX31_RS00740 0.67 -0.2 161,044 + EX31_RS00740 0.69 -0.5 161,045 - EX31_RS00740 0.69 +0.2 161,136 - EX31_RS00740 0.73 -0.5 161,148 + EX31_RS00740 0.73 +0.3 161,262 + EX31_RS00740 0.78 -1.0 161,262 + EX31_RS00740 0.78 -0.3 161,335 + EX31_RS00740 0.81 -0.2 161,335 + EX31_RS00740 0.81 -0.8 161,335 + EX31_RS00740 0.81 -0.1 161,335 + EX31_RS00740 0.81 +0.0 161,335 + EX31_RS00740 0.81 -0.6 161,335 + EX31_RS00740 0.81 -0.6 161,335 + EX31_RS00740 0.81 +0.0 161,336 - EX31_RS00740 0.81 +0.3 161,336 - EX31_RS00740 0.81 +0.3 161,336 - EX31_RS00740 0.81 +0.7 161,336 - EX31_RS00740 0.81 -1.8 161,336 - EX31_RS00740 0.81 -1.2 161,336 - EX31_RS00740 0.81 +1.1 161,336 - EX31_RS00740 0.81 +1.7 161,336 - EX31_RS00740 0.81 +0.3 161,336 - EX31_RS00740 0.81 -1.7 161,336 - EX31_RS00740 0.81 -1.0 161,336 - EX31_RS00740 0.81 +0.7 161,336 - EX31_RS00740 0.81 -1.0 161,347 + EX31_RS00740 0.81 +1.0 161,483 - EX31_RS00740 0.86 +0.6 161,525 + EX31_RS00740 0.88 -0.8 161,526 - EX31_RS00740 0.88 +0.9 161,607 - -0.4 161,669 - -0.0 161,713 + -0.4 161,739 + -0.2 161,750 + +0.5 161,951 + -0.9 161,987 - +0.9 161,987 - +0.3 162,063 + EX31_RS00745 0.14 -0.1 162,064 - EX31_RS00745 0.14 -0.9 162,175 + EX31_RS00745 0.20 +0.6 162,317 - EX31_RS00745 0.28 +0.5 162,525 + EX31_RS00745 0.39 -0.2 162,588 + EX31_RS00745 0.43 -0.2 162,591 + EX31_RS00745 0.43 +1.1 162,591 + EX31_RS00745 0.43 -0.8 162,592 - EX31_RS00745 0.43 -1.5 162,592 - EX31_RS00745 0.43 +0.1 162,592 - EX31_RS00745 0.43 +1.4 162,592 - EX31_RS00745 0.43 -0.3 162,685 + EX31_RS00745 0.48 +0.7 162,695 + EX31_RS00745 0.49 +0.6 162,883 + EX31_RS00745 0.60 -0.2 162,885 + EX31_RS00745 0.60 -1.4 162,885 + EX31_RS00745 0.60 -2.4 162,885 + EX31_RS00745 0.60 -2.1 162,885 + EX31_RS00745 0.60 +0.7 162,886 - EX31_RS00745 0.60 +1.7 162,978 + EX31_RS00745 0.65 -0.0 162,979 - EX31_RS00745 0.65 +1.4 162,979 - EX31_RS00745 0.65 -0.8 163,083 + EX31_RS00745 0.71 +0.4 163,083 + EX31_RS00745 0.71 -0.6 163,084 - EX31_RS00745 0.71 -0.6 163,101 + EX31_RS00745 0.72 +0.3 163,102 - EX31_RS00745 0.72 -1.4 163,120 - EX31_RS00745 0.73 +1.1 163,195 - EX31_RS00745 0.77 -0.8 163,314 + EX31_RS00745 0.84 +0.9 163,409 - EX31_RS00745 0.89 -1.6 163,409 - EX31_RS00745 0.89 -0.3 163,409 - EX31_RS00745 0.89 -1.3 163,410 + EX31_RS00745 0.89 +0.5 163,411 - EX31_RS00745 0.89 -0.6 163,411 - EX31_RS00745 0.89 -0.9 163,411 - EX31_RS00745 0.89 +0.3 163,612 + +0.6 163,625 - -0.4 163,659 - +0.5 163,702 + +0.2 163,702 + +0.3 163,703 - -0.7 163,703 - +1.3 163,703 - -1.8 163,858 + -0.3 163,861 - +0.7 163,872 - -2.6 163,904 - -0.7 163,908 - -0.8 163,924 + +2.1 163,925 - +1.8 163,944 + -2.0 163,944 + -0.5 163,944 + -0.0 163,944 + -1.0 163,944 + -0.7 163,945 - -0.5 163,945 - +0.3 163,945 - -0.3 163,948 + -1.1 163,948 + -0.5 163,975 - -0.5 163,975 - +0.9 163,976 + -0.1 163,976 + -1.3 163,976 + +0.9 163,976 + +0.5 163,977 - +0.3 163,977 - -0.1 163,977 - -0.4 163,977 - +0.3 164,009 + -1.2 164,009 + -1.0 164,010 - -1.9 164,010 - -0.6 164,085 - -1.2 164,085 - +0.3 164,106 + +0.2 164,107 - +1.6 164,107 - -0.2 164,107 - -0.3 164,138 + -0.2 164,158 + +0.4 164,167 + -1.1 164,168 - +0.0 164,168 - -0.5 164,234 + +0.1 164,254 - +0.5 164,254 - -2.5 164,272 + +1.2 164,290 - -0.4 164,341 + +0.2 164,353 - -0.2 164,399 + EX31_RS00755 0.14 +1.2 164,399 + EX31_RS00755 0.14 -0.4 164,400 - EX31_RS00755 0.14 -1.0 164,401 + EX31_RS00755 0.14 -1.0 164,401 + EX31_RS00755 0.14 +0.6 164,402 - EX31_RS00755 0.14 -0.0 164,434 + EX31_RS00755 0.17 -0.3 164,434 + EX31_RS00755 0.17 -1.2 164,443 + EX31_RS00755 0.18 -0.7 164,488 + EX31_RS00755 0.22 +0.7 164,488 + EX31_RS00755 0.22 -0.1 164,488 + EX31_RS00755 0.22 +0.9 164,489 - EX31_RS00755 0.22 -0.0 164,489 - EX31_RS00755 0.22 +0.6 164,492 + EX31_RS00755 0.22 +0.4 164,492 + EX31_RS00755 0.22 -3.2 164,492 + EX31_RS00755 0.22 -0.7 164,492 + EX31_RS00755 0.22 +0.6 164,492 + EX31_RS00755 0.22 -0.3 164,492 + EX31_RS00755 0.22 +0.7 164,492 + EX31_RS00755 0.22 +0.9 164,492 + EX31_RS00755 0.22 +0.7 164,492 + EX31_RS00755 0.22 -1.0 164,492 + EX31_RS00755 0.22 -0.4 164,493 - EX31_RS00755 0.22 -1.5 164,493 - EX31_RS00755 0.22 -0.1 164,493 - EX31_RS00755 0.22 -0.8 164,493 - EX31_RS00755 0.22 -0.2 164,493 - EX31_RS00755 0.22 -0.1 164,493 - EX31_RS00755 0.22 +1.4 164,493 - EX31_RS00755 0.22 +1.4 164,493 - EX31_RS00755 0.22 +0.6 164,493 - EX31_RS00755 0.22 -0.1 164,495 - EX31_RS00755 0.22 -0.7 164,497 + EX31_RS00755 0.23 -1.3 164,497 + EX31_RS00755 0.23 -0.6 164,497 + EX31_RS00755 0.23 +0.8 164,497 + EX31_RS00755 0.23 -0.4 164,497 + EX31_RS00755 0.23 -0.5 164,497 + EX31_RS00755 0.23 -0.4 164,497 + EX31_RS00755 0.23 -0.1 164,497 + EX31_RS00755 0.23 -0.3 164,497 + EX31_RS00755 0.23 -0.9 164,498 - EX31_RS00755 0.23 -0.1 164,498 - EX31_RS00755 0.23 +0.4
Or see this region's nucleotide sequence