Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19690 and EX31_RS19695 are separated by 203 nucleotides EX31_RS19695 and EX31_RS19700 are separated by 85 nucleotides EX31_RS19700 and EX31_RS19705 are separated by 421 nucleotides
EX31_RS19690: EX31_RS19690 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 570,516 to 571,448
_RS19690
EX31_RS19695: EX31_RS19695 - endonuclease SmrB, at 571,652 to 572,191
_RS19695
EX31_RS19700: EX31_RS19700 - phosphohistidine phosphatase SixA, at 572,277 to 572,765
_RS19700
EX31_RS19705: EX31_RS19705 - fatty acid oxidation complex subunit alpha FadJ, at 573,187 to 575,388
_RS19705
Position (kb) 572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 571.352 kb on - strand, within EX31_RS19690 at 571.407 kb on - strand at 571.407 kb on - strand at 571.407 kb on - strand at 571.479 kb on - strand at 571.498 kb on - strand at 571.509 kb on - strand at 571.509 kb on - strand at 571.509 kb on - strand at 571.509 kb on - strand at 571.509 kb on - strand at 571.509 kb on - strand at 571.509 kb on - strand at 571.509 kb on - strand at 571.509 kb on - strand at 571.542 kb on + strand at 571.542 kb on + strand at 571.542 kb on + strand at 571.542 kb on + strand at 571.542 kb on + strand at 571.543 kb on - strand at 571.543 kb on - strand at 571.543 kb on - strand at 571.576 kb on + strand at 571.576 kb on + strand at 571.594 kb on - strand at 571.615 kb on + strand at 571.615 kb on + strand at 571.615 kb on + strand at 571.615 kb on + strand at 571.615 kb on + strand at 571.615 kb on + strand at 571.615 kb on + strand at 571.615 kb on + strand at 571.615 kb on + strand at 571.615 kb on + strand at 571.616 kb on - strand at 571.616 kb on - strand at 571.616 kb on - strand at 571.616 kb on - strand at 571.616 kb on - strand at 571.627 kb on - strand at 571.627 kb on - strand at 571.627 kb on - strand at 571.646 kb on - strand at 571.817 kb on + strand, within EX31_RS19695 at 571.818 kb on - strand, within EX31_RS19695 at 571.821 kb on - strand, within EX31_RS19695 at 571.821 kb on - strand, within EX31_RS19695 at 571.925 kb on + strand, within EX31_RS19695 at 571.950 kb on + strand, within EX31_RS19695 at 571.950 kb on + strand, within EX31_RS19695 at 571.950 kb on + strand, within EX31_RS19695 at 571.951 kb on - strand, within EX31_RS19695 at 571.951 kb on - strand, within EX31_RS19695 at 571.951 kb on - strand, within EX31_RS19695 at 571.959 kb on + strand, within EX31_RS19695 at 571.959 kb on + strand, within EX31_RS19695 at 571.960 kb on - strand, within EX31_RS19695 at 571.975 kb on + strand, within EX31_RS19695 at 571.975 kb on + strand, within EX31_RS19695 at 571.975 kb on + strand, within EX31_RS19695 at 572.037 kb on + strand, within EX31_RS19695 at 572.037 kb on + strand, within EX31_RS19695 at 572.038 kb on - strand, within EX31_RS19695 at 572.059 kb on + strand, within EX31_RS19695 at 572.059 kb on + strand, within EX31_RS19695 at 572.059 kb on + strand, within EX31_RS19695 at 572.257 kb on + strand at 572.257 kb on + strand at 572.279 kb on - strand at 572.279 kb on - strand at 572.666 kb on + strand, within EX31_RS19700 at 572.667 kb on - strand, within EX31_RS19700 at 572.667 kb on - strand, within EX31_RS19700 at 572.667 kb on - strand, within EX31_RS19700 at 572.667 kb on - strand, within EX31_RS19700 at 572.667 kb on - strand, within EX31_RS19700 at 572.667 kb on - strand, within EX31_RS19700 at 572.667 kb on - strand, within EX31_RS19700 at 572.667 kb on - strand, within EX31_RS19700 at 572.671 kb on - strand, within EX31_RS19700 at 572.671 kb on - strand, within EX31_RS19700 at 572.698 kb on - strand, within EX31_RS19700 at 572.755 kb on - strand at 572.755 kb on - strand at 572.766 kb on - strand at 572.792 kb on - strand at 572.821 kb on + strand at 572.822 kb on - strand at 572.822 kb on - strand at 572.822 kb on - strand at 572.822 kb on - strand at 572.822 kb on - strand at 572.822 kb on - strand at 572.822 kb on - strand at 572.872 kb on - strand at 572.872 kb on - strand at 572.878 kb on + strand at 572.878 kb on + strand at 572.879 kb on - strand at 572.879 kb on - strand at 572.879 kb on - strand at 572.879 kb on - strand at 572.879 kb on - strand at 572.879 kb on - strand at 572.879 kb on - strand at 572.893 kb on - strand at 572.893 kb on - strand at 572.893 kb on - strand at 572.893 kb on - strand at 572.893 kb on - strand at 572.893 kb on - strand at 572.932 kb on + strand at 572.933 kb on - strand at 572.933 kb on - strand at 572.933 kb on - strand at 572.972 kb on - strand at 573.017 kb on - strand at 573.032 kb on + strand at 573.047 kb on + strand at 573.047 kb on + strand at 573.048 kb on - strand at 573.048 kb on - strand at 573.048 kb on - strand at 573.074 kb on + strand at 573.094 kb on - strand at 573.172 kb on - strand at 573.172 kb on - strand at 573.172 kb on - strand at 573.195 kb on + strand at 573.195 kb on + strand at 573.204 kb on + strand at 573.204 kb on + strand at 573.219 kb on + strand at 573.256 kb on + strand at 573.256 kb on + strand at 573.256 kb on + strand at 573.256 kb on + strand at 573.256 kb on + strand at 573.256 kb on + strand at 573.257 kb on - strand at 573.257 kb on - strand at 573.259 kb on + strand at 573.260 kb on - strand at 573.260 kb on - strand at 573.290 kb on + strand at 573.291 kb on - strand at 573.291 kb on - strand at 573.350 kb on + strand at 573.350 kb on + strand at 573.404 kb on - strand at 573.451 kb on + strand, within EX31_RS19705 at 573.451 kb on + strand, within EX31_RS19705 at 573.452 kb on - strand, within EX31_RS19705 at 573.452 kb on - strand, within EX31_RS19705 at 573.540 kb on - strand, within EX31_RS19705 at 573.540 kb on - strand, within EX31_RS19705 at 573.540 kb on - strand, within EX31_RS19705 at 573.590 kb on + strand, within EX31_RS19705 at 573.615 kb on + strand, within EX31_RS19705 at 573.615 kb on + strand, within EX31_RS19705
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 571,352 - EX31_RS19690 0.90 -0.8 571,407 - -0.6 571,407 - -1.2 571,407 - -0.8 571,479 - -0.8 571,498 - -0.3 571,509 - +0.5 571,509 - -0.1 571,509 - +0.2 571,509 - -0.5 571,509 - -0.3 571,509 - -1.9 571,509 - -0.1 571,509 - +0.0 571,509 - +0.5 571,542 + -0.8 571,542 + +1.0 571,542 + +1.3 571,542 + +2.2 571,542 + +0.8 571,543 - -0.9 571,543 - +1.3 571,543 - -0.3 571,576 + +0.1 571,576 + -1.7 571,594 - -1.6 571,615 + +0.8 571,615 + -0.4 571,615 + -0.3 571,615 + +0.3 571,615 + +0.1 571,615 + -1.6 571,615 + +0.4 571,615 + +0.0 571,615 + -0.6 571,615 + -1.3 571,616 - -1.3 571,616 - -2.2 571,616 - -0.3 571,616 - -0.8 571,616 - -0.7 571,627 - +0.3 571,627 - -0.2 571,627 - -0.3 571,646 - +0.7 571,817 + EX31_RS19695 0.31 +0.7 571,818 - EX31_RS19695 0.31 +0.0 571,821 - EX31_RS19695 0.31 +0.2 571,821 - EX31_RS19695 0.31 -0.1 571,925 + EX31_RS19695 0.51 -0.3 571,950 + EX31_RS19695 0.55 -0.9 571,950 + EX31_RS19695 0.55 -0.3 571,950 + EX31_RS19695 0.55 -0.6 571,951 - EX31_RS19695 0.55 +2.4 571,951 - EX31_RS19695 0.55 -0.5 571,951 - EX31_RS19695 0.55 +0.3 571,959 + EX31_RS19695 0.57 -0.6 571,959 + EX31_RS19695 0.57 -0.6 571,960 - EX31_RS19695 0.57 +0.7 571,975 + EX31_RS19695 0.60 -0.0 571,975 + EX31_RS19695 0.60 +0.1 571,975 + EX31_RS19695 0.60 +0.6 572,037 + EX31_RS19695 0.71 -0.5 572,037 + EX31_RS19695 0.71 +0.1 572,038 - EX31_RS19695 0.71 +1.1 572,059 + EX31_RS19695 0.75 -0.2 572,059 + EX31_RS19695 0.75 +1.2 572,059 + EX31_RS19695 0.75 -0.7 572,257 + -0.8 572,257 + -0.9 572,279 - -0.2 572,279 - +0.0 572,666 + EX31_RS19700 0.80 -0.4 572,667 - EX31_RS19700 0.80 -0.4 572,667 - EX31_RS19700 0.80 -0.2 572,667 - EX31_RS19700 0.80 +0.2 572,667 - EX31_RS19700 0.80 -0.0 572,667 - EX31_RS19700 0.80 +0.1 572,667 - EX31_RS19700 0.80 -0.5 572,667 - EX31_RS19700 0.80 -0.5 572,667 - EX31_RS19700 0.80 -0.6 572,671 - EX31_RS19700 0.81 -1.6 572,671 - EX31_RS19700 0.81 -1.9 572,698 - EX31_RS19700 0.86 -2.2 572,755 - -1.1 572,755 - +0.5 572,766 - -0.3 572,792 - +0.9 572,821 + -1.1 572,822 - -1.2 572,822 - +1.3 572,822 - +1.2 572,822 - +0.0 572,822 - +0.8 572,822 - -0.2 572,822 - -0.2 572,872 - +0.4 572,872 - +1.1 572,878 + +1.3 572,878 + +0.8 572,879 - +0.1 572,879 - -1.1 572,879 - +0.3 572,879 - +0.3 572,879 - -0.5 572,879 - -0.5 572,879 - -0.6 572,893 - -0.4 572,893 - -0.2 572,893 - -0.6 572,893 - +0.5 572,893 - +0.1 572,893 - +0.5 572,932 + +0.2 572,933 - +0.1 572,933 - +1.1 572,933 - +0.3 572,972 - -1.0 573,017 - -0.0 573,032 + -0.2 573,047 + -1.1 573,047 + -1.1 573,048 - -0.7 573,048 - -0.3 573,048 - -0.9 573,074 + +0.2 573,094 - -0.1 573,172 - +0.7 573,172 - -0.1 573,172 - -0.8 573,195 + +0.8 573,195 + +1.0 573,204 + +0.8 573,204 + -1.1 573,219 + -0.8 573,256 + +0.7 573,256 + +0.1 573,256 + +0.5 573,256 + -1.0 573,256 + -1.3 573,256 + -0.7 573,257 - -1.1 573,257 - -1.1 573,259 + +0.4 573,260 - -0.1 573,260 - +0.9 573,290 + +0.6 573,291 - +0.3 573,291 - +1.6 573,350 + -0.2 573,350 + -0.3 573,404 - -0.4 573,451 + EX31_RS19705 0.12 +0.5 573,451 + EX31_RS19705 0.12 -0.6 573,452 - EX31_RS19705 0.12 -1.2 573,452 - EX31_RS19705 0.12 -0.1 573,540 - EX31_RS19705 0.16 +0.2 573,540 - EX31_RS19705 0.16 +0.6 573,540 - EX31_RS19705 0.16 -0.5 573,590 + EX31_RS19705 0.18 -0.1 573,615 + EX31_RS19705 0.19 -0.7 573,615 + EX31_RS19705 0.19 -0.3
Or see this region's nucleotide sequence