Strain Fitness in Rahnella sp. WP5 around EX31_RS14705

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14695 and EX31_RS14700 overlap by 4 nucleotidesEX31_RS14700 and EX31_RS14705 are separated by 68 nucleotidesEX31_RS14705 and EX31_RS14710 are separated by 66 nucleotides EX31_RS14695: EX31_RS14695 - lysozyme, at 34,259 to 34,765 _RS14695 EX31_RS14700: EX31_RS14700 - hypothetical protein, at 34,762 to 35,142 _RS14700 EX31_RS14705: EX31_RS14705 - hypothetical protein, at 35,211 to 35,513 _RS14705 EX31_RS14710: EX31_RS14710 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 35,580 to 37,859 _RS14710 Position (kb) 35 36Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 34.238 kb on + strandat 34.278 kb on + strandat 34.278 kb on + strandat 34.320 kb on + strand, within EX31_RS14695at 34.320 kb on + strand, within EX31_RS14695at 34.321 kb on - strand, within EX31_RS14695at 34.321 kb on - strand, within EX31_RS14695at 34.321 kb on - strand, within EX31_RS14695at 34.326 kb on + strand, within EX31_RS14695at 34.327 kb on - strand, within EX31_RS14695at 34.441 kb on + strand, within EX31_RS14695at 34.528 kb on + strand, within EX31_RS14695at 34.529 kb on - strand, within EX31_RS14695at 34.529 kb on - strand, within EX31_RS14695at 34.532 kb on + strand, within EX31_RS14695at 34.533 kb on - strand, within EX31_RS14695at 34.533 kb on - strand, within EX31_RS14695at 34.533 kb on - strand, within EX31_RS14695at 34.533 kb on - strand, within EX31_RS14695at 34.577 kb on + strand, within EX31_RS14695at 34.578 kb on - strand, within EX31_RS14695at 34.578 kb on - strand, within EX31_RS14695at 34.747 kb on + strandat 34.748 kb on - strandat 34.775 kb on + strandat 34.844 kb on + strand, within EX31_RS14700at 34.844 kb on + strand, within EX31_RS14700at 34.844 kb on + strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.869 kb on + strand, within EX31_RS14700at 34.869 kb on + strand, within EX31_RS14700at 34.869 kb on + strand, within EX31_RS14700at 34.869 kb on + strand, within EX31_RS14700at 34.870 kb on - strand, within EX31_RS14700at 34.870 kb on - strand, within EX31_RS14700at 34.870 kb on - strand, within EX31_RS14700at 34.870 kb on - strand, within EX31_RS14700at 34.920 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.929 kb on - strand, within EX31_RS14700at 34.929 kb on - strand, within EX31_RS14700at 34.929 kb on - strand, within EX31_RS14700at 34.983 kb on + strand, within EX31_RS14700at 35.137 kb on - strandat 35.205 kb on + strandat 35.206 kb on - strandat 35.255 kb on + strand, within EX31_RS14705at 35.255 kb on + strand, within EX31_RS14705at 35.255 kb on + strand, within EX31_RS14705at 35.280 kb on - strand, within EX31_RS14705at 35.280 kb on - strand, within EX31_RS14705at 35.294 kb on + strand, within EX31_RS14705at 35.323 kb on - strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.382 kb on + strand, within EX31_RS14705at 35.383 kb on - strand, within EX31_RS14705at 35.383 kb on - strand, within EX31_RS14705at 35.383 kb on - strand, within EX31_RS14705at 35.383 kb on - strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.386 kb on - strand, within EX31_RS14705at 35.386 kb on - strand, within EX31_RS14705at 35.386 kb on - strand, within EX31_RS14705at 35.472 kb on + strand, within EX31_RS14705at 35.511 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.561 kb on - strandat 35.561 kb on - strandat 35.561 kb on - strandat 35.561 kb on - strandat 35.561 kb on - strandat 35.566 kb on + strandat 35.567 kb on - strandat 35.567 kb on - strandat 35.705 kb on + strandat 35.705 kb on + strandat 35.721 kb on - strandat 35.999 kb on - strand, within EX31_RS14710at 36.179 kb on + strand, within EX31_RS14710at 36.232 kb on + strand, within EX31_RS14710at 36.232 kb on + strand, within EX31_RS14710at 36.246 kb on + strand, within EX31_RS14710at 36.247 kb on - strand, within EX31_RS14710at 36.247 kb on - strand, within EX31_RS14710at 36.313 kb on + strand, within EX31_RS14710at 36.313 kb on + strand, within EX31_RS14710at 36.313 kb on + strand, within EX31_RS14710at 36.313 kb on + strand, within EX31_RS14710at 36.313 kb on + strand, within EX31_RS14710at 36.313 kb on + strand, within EX31_RS14710at 36.313 kb on + strand, within EX31_RS14710at 36.313 kb on + strand, within EX31_RS14710at 36.314 kb on - strand, within EX31_RS14710at 36.314 kb on - strand, within EX31_RS14710at 36.314 kb on - strand, within EX31_RS14710at 36.314 kb on - strand, within EX31_RS14710at 36.314 kb on - strand, within EX31_RS14710at 36.322 kb on - strand, within EX31_RS14710at 36.322 kb on - strand, within EX31_RS14710at 36.342 kb on + strand, within EX31_RS14710at 36.370 kb on + strand, within EX31_RS14710at 36.370 kb on + strand, within EX31_RS14710at 36.371 kb on - strand, within EX31_RS14710at 36.371 kb on - strand, within EX31_RS14710at 36.371 kb on - strand, within EX31_RS14710at 36.371 kb on - strand, within EX31_RS14710at 36.371 kb on - strand, within EX31_RS14710at 36.386 kb on + strand, within EX31_RS14710at 36.386 kb on + strand, within EX31_RS14710at 36.386 kb on + strand, within EX31_RS14710at 36.387 kb on - strand, within EX31_RS14710at 36.387 kb on - strand, within EX31_RS14710at 36.452 kb on + strand, within EX31_RS14710at 36.452 kb on + strand, within EX31_RS14710at 36.452 kb on + strand, within EX31_RS14710at 36.452 kb on + strand, within EX31_RS14710at 36.452 kb on + strand, within EX31_RS14710at 36.452 kb on + strand, within EX31_RS14710at 36.453 kb on - strand, within EX31_RS14710at 36.453 kb on - strand, within EX31_RS14710at 36.453 kb on - strand, within EX31_RS14710at 36.455 kb on + strand, within EX31_RS14710at 36.455 kb on + strand, within EX31_RS14710at 36.455 kb on + strand, within EX31_RS14710at 36.455 kb on + strand, within EX31_RS14710at 36.455 kb on + strand, within EX31_RS14710at 36.456 kb on - strand, within EX31_RS14710at 36.456 kb on - strand, within EX31_RS14710at 36.456 kb on - strand, within EX31_RS14710at 36.456 kb on - strand, within EX31_RS14710at 36.456 kb on - strand, within EX31_RS14710at 36.456 kb on - strand, within EX31_RS14710at 36.456 kb on - strand, within EX31_RS14710at 36.456 kb on - strand, within EX31_RS14710at 36.482 kb on + strand, within EX31_RS14710at 36.482 kb on + strand, within EX31_RS14710at 36.482 kb on + strand, within EX31_RS14710at 36.482 kb on + strand, within EX31_RS14710at 36.482 kb on + strand, within EX31_RS14710at 36.482 kb on + strand, within EX31_RS14710at 36.482 kb on + strand, within EX31_RS14710at 36.482 kb on + strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.483 kb on - strand, within EX31_RS14710at 36.506 kb on + strand, within EX31_RS14710at 36.507 kb on - strand, within EX31_RS14710

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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34,238 + -0.0
34,278 + -0.1
34,278 + +0.7
34,320 + EX31_RS14695 0.12 -0.6
34,320 + EX31_RS14695 0.12 -0.3
34,321 - EX31_RS14695 0.12 -0.7
34,321 - EX31_RS14695 0.12 +0.8
34,321 - EX31_RS14695 0.12 -0.0
34,326 + EX31_RS14695 0.13 -0.5
34,327 - EX31_RS14695 0.13 +0.2
34,441 + EX31_RS14695 0.36 -0.5
34,528 + EX31_RS14695 0.53 -0.8
34,529 - EX31_RS14695 0.53 -0.9
34,529 - EX31_RS14695 0.53 -0.6
34,532 + EX31_RS14695 0.54 -0.7
34,533 - EX31_RS14695 0.54 -0.3
34,533 - EX31_RS14695 0.54 -0.1
34,533 - EX31_RS14695 0.54 +0.5
34,533 - EX31_RS14695 0.54 -0.4
34,577 + EX31_RS14695 0.63 -0.2
34,578 - EX31_RS14695 0.63 -0.3
34,578 - EX31_RS14695 0.63 -0.6
34,747 + -0.9
34,748 - -0.4
34,775 + -0.9
34,844 + EX31_RS14700 0.22 +0.4
34,844 + EX31_RS14700 0.22 +1.4
34,844 + EX31_RS14700 0.22 -0.6
34,845 - EX31_RS14700 0.22 +0.4
34,845 - EX31_RS14700 0.22 -1.0
34,845 - EX31_RS14700 0.22 -0.5
34,845 - EX31_RS14700 0.22 -0.5
34,845 - EX31_RS14700 0.22 -0.0
34,869 + EX31_RS14700 0.28 -0.9
34,869 + EX31_RS14700 0.28 -0.2
34,869 + EX31_RS14700 0.28 -1.3
34,869 + EX31_RS14700 0.28 +1.5
34,870 - EX31_RS14700 0.28 +0.2
34,870 - EX31_RS14700 0.28 +0.3
34,870 - EX31_RS14700 0.28 -0.5
34,870 - EX31_RS14700 0.28 +0.9
34,920 + EX31_RS14700 0.41 -0.4
34,928 + EX31_RS14700 0.44 -0.8
34,928 + EX31_RS14700 0.44 -0.9
34,928 + EX31_RS14700 0.44 -0.5
34,928 + EX31_RS14700 0.44 -0.1
34,928 + EX31_RS14700 0.44 -0.2
34,928 + EX31_RS14700 0.44 -1.7
34,928 + EX31_RS14700 0.44 +0.1
34,929 - EX31_RS14700 0.44 -0.2
34,929 - EX31_RS14700 0.44 +1.1
34,929 - EX31_RS14700 0.44 -0.1
34,983 + EX31_RS14700 0.58 -0.8
35,137 - +0.4
35,205 + -0.4
35,206 - +1.0
35,255 + EX31_RS14705 0.15 +1.5
35,255 + EX31_RS14705 0.15 -0.5
35,255 + EX31_RS14705 0.15 +1.2
35,280 - EX31_RS14705 0.23 +0.3
35,280 - EX31_RS14705 0.23 +0.3
35,294 + EX31_RS14705 0.27 -0.3
35,323 - EX31_RS14705 0.37 -0.3
35,380 + EX31_RS14705 0.56 -0.8
35,380 + EX31_RS14705 0.56 +0.7
35,380 + EX31_RS14705 0.56 -0.5
35,380 + EX31_RS14705 0.56 +1.5
35,380 + EX31_RS14705 0.56 +0.7
35,380 + EX31_RS14705 0.56 +0.9
35,380 + EX31_RS14705 0.56 +1.1
35,380 + EX31_RS14705 0.56 -0.0
35,380 + EX31_RS14705 0.56 +0.2
35,381 - EX31_RS14705 0.56 +0.2
35,381 - EX31_RS14705 0.56 -0.3
35,381 - EX31_RS14705 0.56 +1.2
35,381 - EX31_RS14705 0.56 -0.4
35,381 - EX31_RS14705 0.56 +1.0
35,381 - EX31_RS14705 0.56 -0.7
35,382 + EX31_RS14705 0.56 -1.2
35,383 - EX31_RS14705 0.57 +0.4
35,383 - EX31_RS14705 0.57 -0.7
35,383 - EX31_RS14705 0.57 +0.2
35,383 - EX31_RS14705 0.57 -0.9
35,385 + EX31_RS14705 0.57 +1.2
35,385 + EX31_RS14705 0.57 -0.2
35,385 + EX31_RS14705 0.57 -0.3
35,385 + EX31_RS14705 0.57 +0.1
35,385 + EX31_RS14705 0.57 -0.2
35,386 - EX31_RS14705 0.58 -0.3
35,386 - EX31_RS14705 0.58 -1.3
35,386 - EX31_RS14705 0.58 +1.3
35,472 + EX31_RS14705 0.86 +0.4
35,511 + +1.1
35,560 + -0.8
35,560 + -0.9
35,560 + -0.4
35,560 + -0.8
35,560 + +0.7
35,560 + -1.2
35,560 + +0.2
35,561 - -0.3
35,561 - +0.8
35,561 - +0.1
35,561 - +0.2
35,561 - -0.6
35,566 + +0.4
35,567 - +0.7
35,567 - -0.4
35,705 + -1.8
35,705 + -3.1
35,721 - -2.8
35,999 - EX31_RS14710 0.18 -2.4
36,179 + EX31_RS14710 0.26 -2.1
36,232 + EX31_RS14710 0.29 -4.2
36,232 + EX31_RS14710 0.29 -4.9
36,246 + EX31_RS14710 0.29 -3.5
36,247 - EX31_RS14710 0.29 -4.4
36,247 - EX31_RS14710 0.29 -3.7
36,313 + EX31_RS14710 0.32 -2.8
36,313 + EX31_RS14710 0.32 -3.4
36,313 + EX31_RS14710 0.32 -2.1
36,313 + EX31_RS14710 0.32 -3.5
36,313 + EX31_RS14710 0.32 -3.3
36,313 + EX31_RS14710 0.32 -2.4
36,313 + EX31_RS14710 0.32 -4.1
36,313 + EX31_RS14710 0.32 -2.6
36,314 - EX31_RS14710 0.32 -3.6
36,314 - EX31_RS14710 0.32 -2.6
36,314 - EX31_RS14710 0.32 -3.9
36,314 - EX31_RS14710 0.32 -2.9
36,314 - EX31_RS14710 0.32 -2.8
36,322 - EX31_RS14710 0.33 -2.4
36,322 - EX31_RS14710 0.33 -1.8
36,342 + EX31_RS14710 0.33 -1.7
36,370 + EX31_RS14710 0.35 -3.3
36,370 + EX31_RS14710 0.35 -3.5
36,371 - EX31_RS14710 0.35 -1.5
36,371 - EX31_RS14710 0.35 -3.6
36,371 - EX31_RS14710 0.35 -5.1
36,371 - EX31_RS14710 0.35 -2.6
36,371 - EX31_RS14710 0.35 -4.6
36,386 + EX31_RS14710 0.35 -2.8
36,386 + EX31_RS14710 0.35 -1.8
36,386 + EX31_RS14710 0.35 -1.7
36,387 - EX31_RS14710 0.35 -2.9
36,387 - EX31_RS14710 0.35 -1.8
36,452 + EX31_RS14710 0.38 -1.5
36,452 + EX31_RS14710 0.38 -4.1
36,452 + EX31_RS14710 0.38 -3.0
36,452 + EX31_RS14710 0.38 -4.3
36,452 + EX31_RS14710 0.38 -3.3
36,452 + EX31_RS14710 0.38 -2.3
36,453 - EX31_RS14710 0.38 -3.3
36,453 - EX31_RS14710 0.38 -2.3
36,453 - EX31_RS14710 0.38 -2.6
36,455 + EX31_RS14710 0.38 -0.7
36,455 + EX31_RS14710 0.38 -3.7
36,455 + EX31_RS14710 0.38 -1.7
36,455 + EX31_RS14710 0.38 -3.2
36,455 + EX31_RS14710 0.38 -2.4
36,456 - EX31_RS14710 0.38 -1.0
36,456 - EX31_RS14710 0.38 -3.5
36,456 - EX31_RS14710 0.38 -4.1
36,456 - EX31_RS14710 0.38 -2.0
36,456 - EX31_RS14710 0.38 -1.7
36,456 - EX31_RS14710 0.38 -3.3
36,456 - EX31_RS14710 0.38 -2.9
36,456 - EX31_RS14710 0.38 -2.5
36,482 + EX31_RS14710 0.40 -4.4
36,482 + EX31_RS14710 0.40 -2.8
36,482 + EX31_RS14710 0.40 -2.1
36,482 + EX31_RS14710 0.40 -2.3
36,482 + EX31_RS14710 0.40 -2.7
36,482 + EX31_RS14710 0.40 -1.5
36,482 + EX31_RS14710 0.40 -4.6
36,482 + EX31_RS14710 0.40 -3.7
36,483 - EX31_RS14710 0.40 -1.1
36,483 - EX31_RS14710 0.40 -3.1
36,483 - EX31_RS14710 0.40 -1.8
36,483 - EX31_RS14710 0.40 -1.5
36,483 - EX31_RS14710 0.40 -2.4
36,483 - EX31_RS14710 0.40 -3.8
36,483 - EX31_RS14710 0.40 -1.5
36,483 - EX31_RS14710 0.40 -1.6
36,483 - EX31_RS14710 0.40 -3.7
36,483 - EX31_RS14710 0.40 -2.9
36,483 - EX31_RS14710 0.40 -3.7
36,483 - EX31_RS14710 0.40 -3.6
36,506 + EX31_RS14710 0.41 -2.8
36,507 - EX31_RS14710 0.41 -1.8

Or see this region's nucleotide sequence