Strain Fitness in Rahnella sp. WP5 around EX31_RS03395

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03385 and EX31_RS03390 are separated by 104 nucleotidesEX31_RS03390 and EX31_RS03395 overlap by 11 nucleotidesEX31_RS03395 and EX31_RS03400 are separated by 76 nucleotides EX31_RS03385: EX31_RS03385 - hypothetical protein, at 164,840 to 165,715 _RS03385 EX31_RS03390: EX31_RS03390 - drug/metabolite DMT transporter permease, at 165,820 to 166,710 _RS03390 EX31_RS03395: EX31_RS03395 - YacL family protein, at 166,700 to 167,065 _RS03395 EX31_RS03400: EX31_RS03400 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 167,142 to 169,739 _RS03400 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1at 165.707 kb on + strandat 165.708 kb on - strandat 165.729 kb on + strandat 165.729 kb on + strandat 165.729 kb on + strandat 165.730 kb on - strandat 165.730 kb on - strandat 165.730 kb on - strandat 165.760 kb on + strandat 165.760 kb on + strandat 165.765 kb on - strandat 165.781 kb on + strandat 165.781 kb on + strandat 165.782 kb on - strandat 165.782 kb on - strandat 165.810 kb on + strandat 165.811 kb on - strandat 165.811 kb on - strandat 165.819 kb on + strandat 165.820 kb on - strandat 165.820 kb on - strandat 165.860 kb on + strandat 165.860 kb on + strandat 165.861 kb on - strandat 165.933 kb on + strand, within EX31_RS03390at 165.933 kb on + strand, within EX31_RS03390at 165.933 kb on + strand, within EX31_RS03390at 165.933 kb on + strand, within EX31_RS03390at 165.934 kb on - strand, within EX31_RS03390at 165.934 kb on - strand, within EX31_RS03390at 165.937 kb on + strand, within EX31_RS03390at 165.937 kb on + strand, within EX31_RS03390at 165.937 kb on + strand, within EX31_RS03390at 165.937 kb on + strand, within EX31_RS03390at 165.937 kb on + strand, within EX31_RS03390at 165.937 kb on + strand, within EX31_RS03390at 165.937 kb on + strand, within EX31_RS03390at 165.937 kb on + strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.938 kb on - strand, within EX31_RS03390at 165.939 kb on + strand, within EX31_RS03390at 165.939 kb on + strand, within EX31_RS03390at 165.939 kb on + strand, within EX31_RS03390at 165.940 kb on - strand, within EX31_RS03390at 166.006 kb on + strand, within EX31_RS03390at 166.006 kb on + strand, within EX31_RS03390at 166.006 kb on + strand, within EX31_RS03390at 166.006 kb on + strand, within EX31_RS03390at 166.006 kb on + strand, within EX31_RS03390at 166.006 kb on + strand, within EX31_RS03390at 166.006 kb on + strand, within EX31_RS03390at 166.006 kb on + strand, within EX31_RS03390at 166.006 kb on + strand, within EX31_RS03390at 166.007 kb on - strand, within EX31_RS03390at 166.007 kb on - strand, within EX31_RS03390at 166.007 kb on - strand, within EX31_RS03390at 166.032 kb on + strand, within EX31_RS03390at 166.032 kb on + strand, within EX31_RS03390at 166.033 kb on - strand, within EX31_RS03390at 166.039 kb on + strand, within EX31_RS03390at 166.039 kb on + strand, within EX31_RS03390at 166.039 kb on + strand, within EX31_RS03390at 166.041 kb on + strand, within EX31_RS03390at 166.041 kb on + strand, within EX31_RS03390at 166.041 kb on + strand, within EX31_RS03390at 166.042 kb on - strand, within EX31_RS03390at 166.042 kb on - strand, within EX31_RS03390at 166.042 kb on - strand, within EX31_RS03390at 166.042 kb on - strand, within EX31_RS03390at 166.114 kb on + strand, within EX31_RS03390at 166.114 kb on + strand, within EX31_RS03390at 166.115 kb on - strand, within EX31_RS03390at 166.115 kb on - strand, within EX31_RS03390at 166.163 kb on + strand, within EX31_RS03390at 166.163 kb on + strand, within EX31_RS03390at 166.163 kb on + strand, within EX31_RS03390at 166.163 kb on + strand, within EX31_RS03390at 166.163 kb on + strand, within EX31_RS03390at 166.164 kb on - strand, within EX31_RS03390at 166.164 kb on - strand, within EX31_RS03390at 166.291 kb on + strand, within EX31_RS03390at 166.330 kb on + strand, within EX31_RS03390at 166.330 kb on + strand, within EX31_RS03390at 166.330 kb on + strand, within EX31_RS03390at 166.331 kb on - strand, within EX31_RS03390at 166.331 kb on - strand, within EX31_RS03390at 166.331 kb on - strand, within EX31_RS03390at 166.331 kb on - strand, within EX31_RS03390at 166.350 kb on - strand, within EX31_RS03390at 166.356 kb on + strand, within EX31_RS03390at 166.357 kb on - strand, within EX31_RS03390at 166.417 kb on + strand, within EX31_RS03390at 166.418 kb on - strand, within EX31_RS03390at 166.418 kb on - strand, within EX31_RS03390at 166.426 kb on + strand, within EX31_RS03390at 166.426 kb on + strand, within EX31_RS03390at 166.426 kb on + strand, within EX31_RS03390at 166.426 kb on + strand, within EX31_RS03390at 166.427 kb on - strand, within EX31_RS03390at 166.427 kb on - strand, within EX31_RS03390at 166.454 kb on + strand, within EX31_RS03390at 166.454 kb on + strand, within EX31_RS03390at 166.473 kb on - strand, within EX31_RS03390at 166.504 kb on + strand, within EX31_RS03390at 166.504 kb on + strand, within EX31_RS03390at 166.505 kb on - strand, within EX31_RS03390at 166.564 kb on + strand, within EX31_RS03390at 166.565 kb on - strand, within EX31_RS03390at 166.565 kb on - strand, within EX31_RS03390at 166.611 kb on + strand, within EX31_RS03390at 166.611 kb on + strand, within EX31_RS03390at 166.611 kb on + strand, within EX31_RS03390at 166.611 kb on + strand, within EX31_RS03390at 166.611 kb on + strand, within EX31_RS03390at 166.612 kb on - strand, within EX31_RS03390at 166.612 kb on - strand, within EX31_RS03390at 166.612 kb on - strand, within EX31_RS03390at 166.612 kb on - strand, within EX31_RS03390at 166.612 kb on - strand, within EX31_RS03390at 166.728 kb on + strandat 166.728 kb on + strandat 166.728 kb on + strandat 166.789 kb on - strand, within EX31_RS03395at 166.791 kb on + strand, within EX31_RS03395at 166.792 kb on - strand, within EX31_RS03395at 166.792 kb on - strand, within EX31_RS03395at 166.792 kb on - strand, within EX31_RS03395at 166.865 kb on + strand, within EX31_RS03395at 166.878 kb on + strand, within EX31_RS03395at 166.878 kb on + strand, within EX31_RS03395at 166.878 kb on + strand, within EX31_RS03395at 166.878 kb on + strand, within EX31_RS03395at 166.878 kb on + strand, within EX31_RS03395at 166.878 kb on + strand, within EX31_RS03395at 166.879 kb on - strand, within EX31_RS03395at 166.879 kb on - strand, within EX31_RS03395at 167.059 kb on - strandat 167.093 kb on - strandat 167.133 kb on + strandat 167.133 kb on + strandat 167.134 kb on - strandat 167.134 kb on - strandat 167.134 kb on - strandat 167.134 kb on - strandat 167.134 kb on - strandat 167.136 kb on - strandat 167.136 kb on - strandat 167.143 kb on + strandat 167.143 kb on + strandat 167.144 kb on - strandat 167.144 kb on - strandat 167.144 kb on - strandat 167.183 kb on + strandat 167.183 kb on + strandat 167.184 kb on - strandat 167.184 kb on - strandat 167.184 kb on - strandat 167.186 kb on - strandat 167.186 kb on - strandat 167.186 kb on - strandat 167.186 kb on - strandat 167.186 kb on - strandat 167.219 kb on - strandat 167.219 kb on - strandat 167.219 kb on - strandat 167.223 kb on - strandat 167.223 kb on - strandat 167.223 kb on - strandat 167.253 kb on - strandat 167.253 kb on - strandat 167.253 kb on - strandat 167.253 kb on - strandat 167.255 kb on - strandat 167.264 kb on - strandat 167.536 kb on - strand, within EX31_RS03400at 167.559 kb on - strand, within EX31_RS03400at 167.709 kb on - strand, within EX31_RS03400at 167.919 kb on - strand, within EX31_RS03400at 167.919 kb on - strand, within EX31_RS03400

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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165,707 + +1.4
165,708 - +0.6
165,729 + +0.7
165,729 + -0.1
165,729 + +0.1
165,730 - -0.5
165,730 - +0.4
165,730 - -0.1
165,760 + -0.6
165,760 + -0.2
165,765 - +1.3
165,781 + +0.7
165,781 + -0.4
165,782 - -0.0
165,782 - -0.7
165,810 + -0.5
165,811 - -1.8
165,811 - -0.8
165,819 + +0.1
165,820 - +0.7
165,820 - +0.2
165,860 + +1.0
165,860 + +0.9
165,861 - +0.9
165,933 + EX31_RS03390 0.13 -0.7
165,933 + EX31_RS03390 0.13 +0.1
165,933 + EX31_RS03390 0.13 +0.9
165,933 + EX31_RS03390 0.13 -0.8
165,934 - EX31_RS03390 0.13 +1.3
165,934 - EX31_RS03390 0.13 +0.2
165,937 + EX31_RS03390 0.13 -0.1
165,937 + EX31_RS03390 0.13 +0.9
165,937 + EX31_RS03390 0.13 -0.1
165,937 + EX31_RS03390 0.13 +0.6
165,937 + EX31_RS03390 0.13 -0.4
165,937 + EX31_RS03390 0.13 +1.1
165,937 + EX31_RS03390 0.13 +1.7
165,937 + EX31_RS03390 0.13 -0.8
165,938 - EX31_RS03390 0.13 -1.2
165,938 - EX31_RS03390 0.13 -1.3
165,938 - EX31_RS03390 0.13 +0.1
165,938 - EX31_RS03390 0.13 -1.3
165,938 - EX31_RS03390 0.13 +0.3
165,938 - EX31_RS03390 0.13 -1.0
165,938 - EX31_RS03390 0.13 -0.6
165,938 - EX31_RS03390 0.13 +1.5
165,938 - EX31_RS03390 0.13 -0.0
165,938 - EX31_RS03390 0.13 -0.9
165,938 - EX31_RS03390 0.13 -0.2
165,938 - EX31_RS03390 0.13 -0.9
165,939 + EX31_RS03390 0.13 -0.1
165,939 + EX31_RS03390 0.13 -0.1
165,939 + EX31_RS03390 0.13 -0.9
165,940 - EX31_RS03390 0.13 +0.1
166,006 + EX31_RS03390 0.21 -0.3
166,006 + EX31_RS03390 0.21 +0.2
166,006 + EX31_RS03390 0.21 +0.9
166,006 + EX31_RS03390 0.21 +0.2
166,006 + EX31_RS03390 0.21 -2.7
166,006 + EX31_RS03390 0.21 +0.4
166,006 + EX31_RS03390 0.21 -0.4
166,006 + EX31_RS03390 0.21 -0.8
166,006 + EX31_RS03390 0.21 +1.0
166,007 - EX31_RS03390 0.21 -0.3
166,007 - EX31_RS03390 0.21 -0.1
166,007 - EX31_RS03390 0.21 +1.4
166,032 + EX31_RS03390 0.24 -0.0
166,032 + EX31_RS03390 0.24 -0.3
166,033 - EX31_RS03390 0.24 +0.7
166,039 + EX31_RS03390 0.25 +0.8
166,039 + EX31_RS03390 0.25 -1.4
166,039 + EX31_RS03390 0.25 -0.2
166,041 + EX31_RS03390 0.25 -0.6
166,041 + EX31_RS03390 0.25 +0.2
166,041 + EX31_RS03390 0.25 -0.1
166,042 - EX31_RS03390 0.25 +0.7
166,042 - EX31_RS03390 0.25 +1.2
166,042 - EX31_RS03390 0.25 +0.3
166,042 - EX31_RS03390 0.25 +0.5
166,114 + EX31_RS03390 0.33 +0.9
166,114 + EX31_RS03390 0.33 -1.5
166,115 - EX31_RS03390 0.33 -0.9
166,115 - EX31_RS03390 0.33 -0.9
166,163 + EX31_RS03390 0.38 -0.9
166,163 + EX31_RS03390 0.38 +1.4
166,163 + EX31_RS03390 0.38 -0.1
166,163 + EX31_RS03390 0.38 +0.5
166,163 + EX31_RS03390 0.38 +0.6
166,164 - EX31_RS03390 0.39 -0.9
166,164 - EX31_RS03390 0.39 -0.0
166,291 + EX31_RS03390 0.53 -0.8
166,330 + EX31_RS03390 0.57 -1.7
166,330 + EX31_RS03390 0.57 +1.2
166,330 + EX31_RS03390 0.57 -1.7
166,331 - EX31_RS03390 0.57 -0.5
166,331 - EX31_RS03390 0.57 -0.5
166,331 - EX31_RS03390 0.57 -0.4
166,331 - EX31_RS03390 0.57 +0.4
166,350 - EX31_RS03390 0.59 -1.3
166,356 + EX31_RS03390 0.60 +1.1
166,357 - EX31_RS03390 0.60 -0.2
166,417 + EX31_RS03390 0.67 -0.7
166,418 - EX31_RS03390 0.67 -1.0
166,418 - EX31_RS03390 0.67 -0.0
166,426 + EX31_RS03390 0.68 +0.6
166,426 + EX31_RS03390 0.68 -1.4
166,426 + EX31_RS03390 0.68 +0.3
166,426 + EX31_RS03390 0.68 +0.2
166,427 - EX31_RS03390 0.68 +0.1
166,427 - EX31_RS03390 0.68 -2.0
166,454 + EX31_RS03390 0.71 -1.0
166,454 + EX31_RS03390 0.71 -0.4
166,473 - EX31_RS03390 0.73 -0.7
166,504 + EX31_RS03390 0.77 +1.5
166,504 + EX31_RS03390 0.77 -0.3
166,505 - EX31_RS03390 0.77 +0.2
166,564 + EX31_RS03390 0.84 +0.0
166,565 - EX31_RS03390 0.84 -0.2
166,565 - EX31_RS03390 0.84 -2.1
166,611 + EX31_RS03390 0.89 +0.1
166,611 + EX31_RS03390 0.89 -0.0
166,611 + EX31_RS03390 0.89 -0.1
166,611 + EX31_RS03390 0.89 +0.8
166,611 + EX31_RS03390 0.89 +0.8
166,612 - EX31_RS03390 0.89 -1.8
166,612 - EX31_RS03390 0.89 -0.4
166,612 - EX31_RS03390 0.89 -1.5
166,612 - EX31_RS03390 0.89 -0.1
166,612 - EX31_RS03390 0.89 -1.1
166,728 + +0.4
166,728 + -0.1
166,728 + +1.7
166,789 - EX31_RS03395 0.24 +0.6
166,791 + EX31_RS03395 0.25 +0.4
166,792 - EX31_RS03395 0.25 +0.2
166,792 - EX31_RS03395 0.25 +0.3
166,792 - EX31_RS03395 0.25 -0.1
166,865 + EX31_RS03395 0.45 -0.4
166,878 + EX31_RS03395 0.49 -0.7
166,878 + EX31_RS03395 0.49 -0.3
166,878 + EX31_RS03395 0.49 -0.1
166,878 + EX31_RS03395 0.49 +0.5
166,878 + EX31_RS03395 0.49 -0.0
166,878 + EX31_RS03395 0.49 +0.3
166,879 - EX31_RS03395 0.49 -0.5
166,879 - EX31_RS03395 0.49 +1.1
167,059 - -1.3
167,093 - -0.2
167,133 + -0.3
167,133 + +0.7
167,134 - -0.3
167,134 - +0.3
167,134 - -0.1
167,134 - +0.8
167,134 - -0.4
167,136 - -0.5
167,136 - -0.2
167,143 + +0.4
167,143 + -1.6
167,144 - +0.9
167,144 - -0.1
167,144 - -0.4
167,183 + -0.3
167,183 + -1.5
167,184 - -0.3
167,184 - -0.1
167,184 - -0.2
167,186 - +0.1
167,186 - -0.6
167,186 - +0.4
167,186 - -0.2
167,186 - -0.8
167,219 - -0.3
167,219 - -0.6
167,219 - -1.1
167,223 - +0.8
167,223 - -1.4
167,223 - -1.9
167,253 - -1.3
167,253 - +0.1
167,253 - -1.2
167,253 - +0.4
167,255 - -1.6
167,264 - -2.1
167,536 - EX31_RS03400 0.15 -0.6
167,559 - EX31_RS03400 0.16 -0.5
167,709 - EX31_RS03400 0.22 -1.9
167,919 - EX31_RS03400 0.30 -1.4
167,919 - EX31_RS03400 0.30 -1.6

Or see this region's nucleotide sequence