Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00705 and EX31_RS00710 are separated by 236 nucleotides EX31_RS00710 and EX31_RS00715 are separated by 125 nucleotides
EX31_RS00705: EX31_RS00705 - ABC transporter ATP-binding protein, at 149,133 to 150,722
_RS00705
EX31_RS00710: EX31_RS00710 - HAMP domain-containing protein, at 150,959 to 152,623
_RS00710
EX31_RS00715: EX31_RS00715 - class A beta-lactamase, at 152,749 to 153,636
_RS00715
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.069 kb on - strand, within EX31_RS00705 at 150.136 kb on + strand, within EX31_RS00705 at 150.136 kb on + strand, within EX31_RS00705 at 150.136 kb on + strand, within EX31_RS00705 at 150.137 kb on - strand, within EX31_RS00705 at 150.139 kb on + strand, within EX31_RS00705 at 150.233 kb on + strand, within EX31_RS00705 at 150.269 kb on + strand, within EX31_RS00705 at 150.269 kb on + strand, within EX31_RS00705 at 150.269 kb on + strand, within EX31_RS00705 at 150.270 kb on - strand, within EX31_RS00705 at 150.270 kb on - strand, within EX31_RS00705 at 150.396 kb on - strand, within EX31_RS00705 at 150.396 kb on - strand, within EX31_RS00705 at 150.491 kb on - strand, within EX31_RS00705 at 150.525 kb on + strand, within EX31_RS00705 at 150.525 kb on + strand, within EX31_RS00705 at 150.525 kb on + strand, within EX31_RS00705 at 150.525 kb on + strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.533 kb on + strand, within EX31_RS00705 at 150.547 kb on + strand, within EX31_RS00705 at 150.556 kb on + strand, within EX31_RS00705 at 150.556 kb on + strand, within EX31_RS00705 at 150.556 kb on + strand, within EX31_RS00705 at 150.557 kb on - strand, within EX31_RS00705 at 150.652 kb on - strand at 150.664 kb on + strand at 150.716 kb on + strand at 150.716 kb on + strand at 150.717 kb on - strand at 150.723 kb on + strand at 150.812 kb on + strand at 150.836 kb on + strand at 150.840 kb on + strand at 150.841 kb on - strand at 150.862 kb on + strand at 151.162 kb on + strand, within EX31_RS00710 at 151.224 kb on + strand, within EX31_RS00710 at 151.224 kb on + strand, within EX31_RS00710 at 151.443 kb on - strand, within EX31_RS00710 at 151.501 kb on + strand, within EX31_RS00710 at 151.589 kb on + strand, within EX31_RS00710 at 151.624 kb on + strand, within EX31_RS00710 at 152.002 kb on + strand, within EX31_RS00710 at 152.002 kb on + strand, within EX31_RS00710 at 152.002 kb on + strand, within EX31_RS00710 at 152.002 kb on + strand, within EX31_RS00710 at 152.002 kb on + strand, within EX31_RS00710 at 152.003 kb on - strand, within EX31_RS00710 at 152.014 kb on + strand, within EX31_RS00710 at 152.014 kb on + strand, within EX31_RS00710 at 152.015 kb on - strand, within EX31_RS00710 at 152.276 kb on - strand, within EX31_RS00710 at 152.424 kb on + strand, within EX31_RS00710 at 152.450 kb on + strand, within EX31_RS00710 at 152.495 kb on - strand at 152.621 kb on + strand at 152.622 kb on - strand at 152.634 kb on - strand at 152.634 kb on - strand at 152.662 kb on + strand at 152.732 kb on + strand at 152.732 kb on + strand at 152.733 kb on - strand at 152.769 kb on + strand at 152.769 kb on + strand at 152.769 kb on + strand at 152.770 kb on - strand at 152.922 kb on + strand, within EX31_RS00715 at 152.922 kb on + strand, within EX31_RS00715 at 152.923 kb on - strand, within EX31_RS00715 at 153.012 kb on + strand, within EX31_RS00715 at 153.082 kb on + strand, within EX31_RS00715 at 153.154 kb on + strand, within EX31_RS00715 at 153.155 kb on - strand, within EX31_RS00715 at 153.166 kb on - strand, within EX31_RS00715 at 153.220 kb on + strand, within EX31_RS00715 at 153.228 kb on + strand, within EX31_RS00715 at 153.528 kb on + strand, within EX31_RS00715 at 153.549 kb on + strand at 153.549 kb on + strand at 153.549 kb on + strand at 153.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 150,069 - EX31_RS00705 0.59 -1.2 150,136 + EX31_RS00705 0.63 -0.3 150,136 + EX31_RS00705 0.63 -0.3 150,136 + EX31_RS00705 0.63 +0.4 150,137 - EX31_RS00705 0.63 -0.9 150,139 + EX31_RS00705 0.63 +1.2 150,233 + EX31_RS00705 0.69 -0.4 150,269 + EX31_RS00705 0.71 +1.2 150,269 + EX31_RS00705 0.71 -0.5 150,269 + EX31_RS00705 0.71 -0.1 150,270 - EX31_RS00705 0.72 +0.1 150,270 - EX31_RS00705 0.72 -1.7 150,396 - EX31_RS00705 0.79 +0.6 150,396 - EX31_RS00705 0.79 -0.4 150,491 - EX31_RS00705 0.85 -0.6 150,525 + EX31_RS00705 0.88 +1.1 150,525 + EX31_RS00705 0.88 +1.7 150,525 + EX31_RS00705 0.88 +0.1 150,525 + EX31_RS00705 0.88 +0.6 150,526 - EX31_RS00705 0.88 +0.1 150,526 - EX31_RS00705 0.88 -0.3 150,526 - EX31_RS00705 0.88 +0.9 150,526 - EX31_RS00705 0.88 -0.7 150,526 - EX31_RS00705 0.88 +1.6 150,533 + EX31_RS00705 0.88 +0.1 150,547 + EX31_RS00705 0.89 -1.7 150,556 + EX31_RS00705 0.89 -2.0 150,556 + EX31_RS00705 0.89 +0.9 150,556 + EX31_RS00705 0.89 -0.9 150,557 - EX31_RS00705 0.90 -0.9 150,652 - +1.1 150,664 + +2.1 150,716 + +0.2 150,716 + +1.4 150,717 - -0.6 150,723 + -0.4 150,812 + -2.8 150,836 + -0.8 150,840 + -1.1 150,841 - +0.4 150,862 + +0.1 151,162 + EX31_RS00710 0.12 +0.1 151,224 + EX31_RS00710 0.16 -0.4 151,224 + EX31_RS00710 0.16 +0.7 151,443 - EX31_RS00710 0.29 +0.2 151,501 + EX31_RS00710 0.33 +0.8 151,589 + EX31_RS00710 0.38 +0.3 151,624 + EX31_RS00710 0.40 -0.8 152,002 + EX31_RS00710 0.63 -2.1 152,002 + EX31_RS00710 0.63 +0.0 152,002 + EX31_RS00710 0.63 +1.3 152,002 + EX31_RS00710 0.63 -0.1 152,002 + EX31_RS00710 0.63 +1.1 152,003 - EX31_RS00710 0.63 -1.2 152,014 + EX31_RS00710 0.63 -0.4 152,014 + EX31_RS00710 0.63 +0.8 152,015 - EX31_RS00710 0.63 -0.3 152,276 - EX31_RS00710 0.79 +0.2 152,424 + EX31_RS00710 0.88 +0.8 152,450 + EX31_RS00710 0.90 -0.2 152,495 - +0.2 152,621 + -0.8 152,622 - -1.3 152,634 - +1.5 152,634 - -1.3 152,662 + +0.1 152,732 + -0.1 152,732 + +0.7 152,733 - +0.2 152,769 + -0.0 152,769 + +1.0 152,769 + +0.5 152,770 - +1.4 152,922 + EX31_RS00715 0.19 +0.9 152,922 + EX31_RS00715 0.19 -0.6 152,923 - EX31_RS00715 0.20 -1.7 153,012 + EX31_RS00715 0.30 +0.8 153,082 + EX31_RS00715 0.38 -0.8 153,154 + EX31_RS00715 0.46 -0.8 153,155 - EX31_RS00715 0.46 +0.1 153,166 - EX31_RS00715 0.47 +0.1 153,220 + EX31_RS00715 0.53 +1.2 153,228 + EX31_RS00715 0.54 -0.1 153,528 + EX31_RS00715 0.88 +1.5 153,549 + -0.1 153,549 + +0.7 153,549 + +0.2 153,550 - -0.8
Or see this region's nucleotide sequence