Strain Fitness in Rahnella sp. WP5 around EX31_RS00230

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00225 and EX31_RS00230 are separated by 56 nucleotidesEX31_RS00230 and EX31_RS00235 overlap by 4 nucleotides EX31_RS00225: EX31_RS00225 - ABC transporter permease, at 45,704 to 46,666 _RS00225 EX31_RS00230: EX31_RS00230 - ABC transporter permease, at 46,723 to 47,736 _RS00230 EX31_RS00235: EX31_RS00235 - sugar ABC transporter ATP-binding protein, at 47,733 to 49,247 _RS00235 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 45.854 kb on - strand, within EX31_RS00225at 45.857 kb on + strand, within EX31_RS00225at 45.958 kb on + strand, within EX31_RS00225at 46.092 kb on + strand, within EX31_RS00225at 46.093 kb on - strand, within EX31_RS00225at 46.093 kb on - strand, within EX31_RS00225at 46.093 kb on - strand, within EX31_RS00225at 46.093 kb on - strand, within EX31_RS00225at 46.111 kb on + strand, within EX31_RS00225at 46.111 kb on + strand, within EX31_RS00225at 46.111 kb on + strand, within EX31_RS00225at 46.131 kb on + strand, within EX31_RS00225at 46.192 kb on - strand, within EX31_RS00225at 46.229 kb on - strand, within EX31_RS00225at 46.257 kb on + strand, within EX31_RS00225at 46.257 kb on + strand, within EX31_RS00225at 46.257 kb on + strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.261 kb on + strand, within EX31_RS00225at 46.294 kb on + strand, within EX31_RS00225at 46.295 kb on - strand, within EX31_RS00225at 46.528 kb on + strand, within EX31_RS00225at 46.553 kb on + strand, within EX31_RS00225at 46.553 kb on + strand, within EX31_RS00225at 46.554 kb on - strand, within EX31_RS00225at 46.554 kb on - strand, within EX31_RS00225at 46.554 kb on - strand, within EX31_RS00225at 46.554 kb on - strand, within EX31_RS00225at 46.555 kb on + strand, within EX31_RS00225at 46.555 kb on + strand, within EX31_RS00225at 46.556 kb on - strand, within EX31_RS00225at 46.556 kb on - strand, within EX31_RS00225at 46.556 kb on - strand, within EX31_RS00225at 46.556 kb on - strand, within EX31_RS00225at 46.596 kb on - strandat 46.794 kb on + strandat 46.999 kb on + strand, within EX31_RS00230at 47.028 kb on - strand, within EX31_RS00230at 47.028 kb on - strand, within EX31_RS00230at 47.132 kb on + strand, within EX31_RS00230at 47.133 kb on - strand, within EX31_RS00230at 47.133 kb on - strand, within EX31_RS00230at 47.133 kb on - strand, within EX31_RS00230at 47.165 kb on + strand, within EX31_RS00230at 47.165 kb on + strand, within EX31_RS00230at 47.166 kb on - strand, within EX31_RS00230at 47.202 kb on - strand, within EX31_RS00230at 47.337 kb on + strand, within EX31_RS00230at 47.338 kb on - strand, within EX31_RS00230at 47.338 kb on - strand, within EX31_RS00230at 47.415 kb on + strand, within EX31_RS00230at 47.683 kb on + strandat 47.684 kb on - strandat 47.684 kb on - strandat 47.886 kb on - strand, within EX31_RS00235at 47.921 kb on + strand, within EX31_RS00235at 47.922 kb on - strand, within EX31_RS00235at 47.922 kb on - strand, within EX31_RS00235at 47.922 kb on - strand, within EX31_RS00235at 48.101 kb on - strand, within EX31_RS00235at 48.153 kb on - strand, within EX31_RS00235at 48.238 kb on + strand, within EX31_RS00235at 48.238 kb on + strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.337 kb on - strand, within EX31_RS00235at 48.520 kb on - strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.605 kb on - strand, within EX31_RS00235

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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45,854 - EX31_RS00225 0.16 +0.2
45,857 + EX31_RS00225 0.16 +0.6
45,958 + EX31_RS00225 0.26 -0.9
46,092 + EX31_RS00225 0.40 -0.9
46,093 - EX31_RS00225 0.40 +1.5
46,093 - EX31_RS00225 0.40 +0.0
46,093 - EX31_RS00225 0.40 +0.3
46,093 - EX31_RS00225 0.40 +0.7
46,111 + EX31_RS00225 0.42 -0.1
46,111 + EX31_RS00225 0.42 +0.1
46,111 + EX31_RS00225 0.42 +0.6
46,131 + EX31_RS00225 0.44 +1.0
46,192 - EX31_RS00225 0.51 -0.2
46,229 - EX31_RS00225 0.55 -1.0
46,257 + EX31_RS00225 0.57 +0.8
46,257 + EX31_RS00225 0.57 -0.1
46,257 + EX31_RS00225 0.57 -1.3
46,258 - EX31_RS00225 0.58 -0.2
46,258 - EX31_RS00225 0.58 -0.3
46,258 - EX31_RS00225 0.58 +0.4
46,258 - EX31_RS00225 0.58 -1.1
46,258 - EX31_RS00225 0.58 +1.3
46,261 + EX31_RS00225 0.58 +0.1
46,294 + EX31_RS00225 0.61 +0.3
46,295 - EX31_RS00225 0.61 +0.1
46,528 + EX31_RS00225 0.86 +1.3
46,553 + EX31_RS00225 0.88 -0.7
46,553 + EX31_RS00225 0.88 -0.1
46,554 - EX31_RS00225 0.88 -0.1
46,554 - EX31_RS00225 0.88 -0.4
46,554 - EX31_RS00225 0.88 +1.1
46,554 - EX31_RS00225 0.88 +1.6
46,555 + EX31_RS00225 0.88 -1.7
46,555 + EX31_RS00225 0.88 +0.2
46,556 - EX31_RS00225 0.88 +0.1
46,556 - EX31_RS00225 0.88 +0.8
46,556 - EX31_RS00225 0.88 +0.1
46,556 - EX31_RS00225 0.88 +0.9
46,596 - -0.4
46,794 + +1.4
46,999 + EX31_RS00230 0.27 +0.1
47,028 - EX31_RS00230 0.30 -0.4
47,028 - EX31_RS00230 0.30 -1.0
47,132 + EX31_RS00230 0.40 -0.1
47,133 - EX31_RS00230 0.40 -0.9
47,133 - EX31_RS00230 0.40 +1.4
47,133 - EX31_RS00230 0.40 -0.5
47,165 + EX31_RS00230 0.44 +0.9
47,165 + EX31_RS00230 0.44 +0.9
47,166 - EX31_RS00230 0.44 +0.0
47,202 - EX31_RS00230 0.47 +0.9
47,337 + EX31_RS00230 0.61 +1.0
47,338 - EX31_RS00230 0.61 -0.4
47,338 - EX31_RS00230 0.61 +1.3
47,415 + EX31_RS00230 0.68 -2.7
47,683 + -0.8
47,684 - +0.1
47,684 - -0.5
47,886 - EX31_RS00235 0.10 -0.6
47,921 + EX31_RS00235 0.12 +1.2
47,922 - EX31_RS00235 0.12 +1.1
47,922 - EX31_RS00235 0.12 +0.7
47,922 - EX31_RS00235 0.12 +0.0
48,101 - EX31_RS00235 0.24 +0.1
48,153 - EX31_RS00235 0.28 +0.5
48,238 + EX31_RS00235 0.33 +1.3
48,238 + EX31_RS00235 0.33 +0.5
48,239 - EX31_RS00235 0.33 -0.7
48,239 - EX31_RS00235 0.33 +0.3
48,239 - EX31_RS00235 0.33 -1.1
48,239 - EX31_RS00235 0.33 +1.0
48,239 - EX31_RS00235 0.33 +0.6
48,239 - EX31_RS00235 0.33 -0.3
48,337 - EX31_RS00235 0.40 +1.2
48,520 - EX31_RS00235 0.52 -0.6
48,577 + EX31_RS00235 0.56 +0.7
48,577 + EX31_RS00235 0.56 +0.2
48,577 + EX31_RS00235 0.56 +0.9
48,577 + EX31_RS00235 0.56 -0.0
48,578 - EX31_RS00235 0.56 -1.0
48,578 - EX31_RS00235 0.56 -0.2
48,578 - EX31_RS00235 0.56 +0.0
48,578 - EX31_RS00235 0.56 +0.5
48,578 - EX31_RS00235 0.56 +0.0
48,601 + EX31_RS00235 0.57 -0.4
48,601 + EX31_RS00235 0.57 -0.5
48,601 + EX31_RS00235 0.57 +1.6
48,601 + EX31_RS00235 0.57 -1.1
48,602 - EX31_RS00235 0.57 -0.7
48,602 - EX31_RS00235 0.57 -0.7
48,602 - EX31_RS00235 0.57 -0.4
48,602 - EX31_RS00235 0.57 +0.6
48,605 - EX31_RS00235 0.58 +1.1

Or see this region's nucleotide sequence