Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15455 and EX31_RS25410 are separated by 222 nucleotides EX31_RS25410 and EX31_RS15460 are separated by 619 nucleotides
EX31_RS15455: EX31_RS15455 - IS110 family transposase, at 45,004 to 46,026
_RS15455
EX31_RS25410: EX31_RS25410 - transposase, at 46,249 to 46,365
_RS25410
EX31_RS15460: EX31_RS15460 - hypothetical protein, at 46,985 to 47,179
_RS15460
Position (kb) 46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 45.290 kb on + strand, within EX31_RS15455 at 45.312 kb on + strand, within EX31_RS15455 at 45.312 kb on + strand, within EX31_RS15455 at 45.312 kb on + strand, within EX31_RS15455 at 45.312 kb on + strand, within EX31_RS15455 at 45.312 kb on + strand, within EX31_RS15455 at 45.312 kb on + strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.313 kb on - strand, within EX31_RS15455 at 45.365 kb on + strand, within EX31_RS15455 at 45.365 kb on + strand, within EX31_RS15455 at 45.365 kb on + strand, within EX31_RS15455 at 45.365 kb on + strand, within EX31_RS15455 at 45.365 kb on + strand, within EX31_RS15455 at 45.365 kb on + strand, within EX31_RS15455 at 45.384 kb on + strand, within EX31_RS15455 at 45.385 kb on - strand, within EX31_RS15455 at 45.385 kb on - strand, within EX31_RS15455 at 45.390 kb on + strand, within EX31_RS15455 at 45.391 kb on - strand, within EX31_RS15455 at 45.399 kb on + strand, within EX31_RS15455 at 45.400 kb on - strand, within EX31_RS15455 at 45.400 kb on - strand, within EX31_RS15455 at 45.400 kb on - strand, within EX31_RS15455 at 45.400 kb on - strand, within EX31_RS15455 at 45.400 kb on - strand, within EX31_RS15455 at 45.400 kb on - strand, within EX31_RS15455 at 45.405 kb on + strand, within EX31_RS15455 at 45.405 kb on + strand, within EX31_RS15455 at 45.405 kb on + strand, within EX31_RS15455 at 45.405 kb on + strand, within EX31_RS15455 at 45.406 kb on - strand, within EX31_RS15455 at 45.446 kb on + strand, within EX31_RS15455 at 45.519 kb on + strand, within EX31_RS15455 at 45.525 kb on + strand, within EX31_RS15455 at 45.525 kb on + strand, within EX31_RS15455 at 45.526 kb on - strand, within EX31_RS15455 at 45.553 kb on + strand, within EX31_RS15455 at 45.554 kb on - strand, within EX31_RS15455 at 45.669 kb on + strand, within EX31_RS15455 at 45.669 kb on + strand, within EX31_RS15455 at 45.788 kb on + strand, within EX31_RS15455 at 45.789 kb on - strand, within EX31_RS15455 at 45.799 kb on - strand, within EX31_RS15455 at 45.799 kb on - strand, within EX31_RS15455 at 45.837 kb on + strand, within EX31_RS15455 at 45.877 kb on - strand, within EX31_RS15455 at 45.933 kb on + strand at 45.936 kb on + strand at 45.937 kb on - strand at 46.051 kb on + strand at 46.097 kb on + strand at 46.100 kb on + strand at 46.100 kb on + strand at 46.100 kb on + strand at 46.100 kb on + strand at 46.100 kb on + strand at 46.100 kb on + strand at 46.100 kb on + strand at 46.101 kb on - strand at 46.101 kb on - strand at 46.101 kb on - strand at 46.101 kb on - strand at 46.101 kb on - strand at 46.101 kb on - strand at 46.102 kb on + strand at 46.102 kb on + strand at 46.102 kb on + strand at 46.102 kb on + strand at 46.102 kb on + strand at 46.102 kb on + strand at 46.102 kb on + strand at 46.103 kb on - strand at 46.140 kb on + strand at 46.140 kb on + strand at 46.141 kb on - strand at 46.141 kb on - strand at 46.168 kb on + strand at 46.169 kb on - strand at 46.187 kb on + strand at 46.187 kb on + strand at 46.187 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.193 kb on + strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.194 kb on - strand at 46.237 kb on + strand at 46.237 kb on + strand at 46.238 kb on - strand at 46.238 kb on - strand at 46.244 kb on + strand at 46.244 kb on + strand at 46.244 kb on + strand at 46.244 kb on + strand at 46.244 kb on + strand at 46.245 kb on - strand at 46.245 kb on - strand at 46.245 kb on - strand at 46.245 kb on - strand at 46.245 kb on - strand at 46.245 kb on - strand at 46.245 kb on - strand at 46.245 kb on - strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.248 kb on + strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.249 kb on - strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.250 kb on + strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.251 kb on - strand at 46.252 kb on + strand at 46.253 kb on + strand at 46.253 kb on + strand at 46.253 kb on + strand at 46.253 kb on + strand at 46.253 kb on + strand at 46.253 kb on + strand at 46.253 kb on + strand at 46.254 kb on - strand at 46.254 kb on - strand at 46.254 kb on - strand at 46.254 kb on - strand at 46.254 kb on - strand at 46.348 kb on - strand, within EX31_RS25410 at 46.385 kb on + strand at 46.385 kb on + strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.392 kb on + strand at 46.392 kb on + strand at 46.392 kb on + strand at 46.392 kb on + strand at 46.392 kb on + strand at 46.393 kb on - strand at 46.393 kb on - strand at 46.393 kb on - strand at 46.393 kb on - strand at 46.393 kb on - strand at 46.393 kb on - strand at 46.437 kb on - strand at 46.440 kb on + strand at 46.440 kb on + strand at 46.440 kb on + strand at 46.440 kb on + strand at 46.440 kb on + strand at 46.441 kb on - strand at 46.441 kb on - strand at 46.441 kb on - strand at 46.458 kb on + strand at 46.465 kb on + strand at 46.465 kb on + strand at 46.465 kb on + strand at 46.465 kb on + strand at 46.465 kb on + strand at 46.467 kb on + strand at 46.467 kb on + strand at 46.467 kb on + strand at 46.467 kb on + strand at 46.468 kb on - strand at 46.468 kb on - strand at 46.549 kb on + strand at 46.570 kb on + strand at 46.570 kb on + strand at 46.590 kb on + strand at 46.595 kb on - strand at 46.639 kb on + strand at 46.639 kb on + strand at 46.734 kb on + strand at 46.746 kb on - strand at 46.754 kb on + strand at 46.754 kb on + strand at 46.759 kb on + strand at 46.818 kb on + strand at 46.926 kb on + strand at 46.964 kb on - strand at 46.990 kb on + strand at 47.005 kb on - strand, within EX31_RS15460 at 47.009 kb on + strand, within EX31_RS15460 at 47.009 kb on + strand, within EX31_RS15460 at 47.023 kb on + strand, within EX31_RS15460 at 47.024 kb on - strand, within EX31_RS15460 at 47.024 kb on - strand, within EX31_RS15460 at 47.025 kb on + strand, within EX31_RS15460 at 47.150 kb on - strand, within EX31_RS15460 at 47.150 kb on - strand, within EX31_RS15460 at 47.164 kb on + strand at 47.165 kb on - strand at 47.192 kb on + strand at 47.192 kb on + strand at 47.206 kb on + strand at 47.219 kb on + strand at 47.234 kb on + strand at 47.245 kb on - strand at 47.245 kb on - strand at 47.252 kb on + strand at 47.253 kb on - strand at 47.261 kb on - strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.273 kb on + strand at 47.274 kb on - strand at 47.274 kb on - strand at 47.274 kb on - strand at 47.274 kb on - strand at 47.274 kb on - strand at 47.274 kb on - strand at 47.274 kb on - strand at 47.274 kb on - strand at 47.276 kb on + strand at 47.277 kb on - strand at 47.277 kb on - strand at 47.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 45,290 + EX31_RS15455 0.28 +1.0 45,312 + EX31_RS15455 0.30 -0.8 45,312 + EX31_RS15455 0.30 +0.8 45,312 + EX31_RS15455 0.30 +0.7 45,312 + EX31_RS15455 0.30 -0.4 45,312 + EX31_RS15455 0.30 +0.5 45,312 + EX31_RS15455 0.30 +0.7 45,313 - EX31_RS15455 0.30 -0.4 45,313 - EX31_RS15455 0.30 -0.6 45,313 - EX31_RS15455 0.30 +0.2 45,313 - EX31_RS15455 0.30 +0.5 45,313 - EX31_RS15455 0.30 -0.8 45,313 - EX31_RS15455 0.30 -0.7 45,313 - EX31_RS15455 0.30 +0.2 45,313 - EX31_RS15455 0.30 -0.1 45,313 - EX31_RS15455 0.30 -2.5 45,313 - EX31_RS15455 0.30 -0.2 45,365 + EX31_RS15455 0.35 -0.4 45,365 + EX31_RS15455 0.35 +0.6 45,365 + EX31_RS15455 0.35 +0.7 45,365 + EX31_RS15455 0.35 +0.9 45,365 + EX31_RS15455 0.35 +1.0 45,365 + EX31_RS15455 0.35 +0.7 45,384 + EX31_RS15455 0.37 -1.2 45,385 - EX31_RS15455 0.37 -0.7 45,385 - EX31_RS15455 0.37 -0.9 45,390 + EX31_RS15455 0.38 -2.3 45,391 - EX31_RS15455 0.38 +0.1 45,399 + EX31_RS15455 0.39 -0.1 45,400 - EX31_RS15455 0.39 +0.3 45,400 - EX31_RS15455 0.39 -0.8 45,400 - EX31_RS15455 0.39 -0.6 45,400 - EX31_RS15455 0.39 +0.3 45,400 - EX31_RS15455 0.39 -1.7 45,400 - EX31_RS15455 0.39 +0.7 45,405 + EX31_RS15455 0.39 -1.4 45,405 + EX31_RS15455 0.39 -0.2 45,405 + EX31_RS15455 0.39 -0.8 45,405 + EX31_RS15455 0.39 -0.5 45,406 - EX31_RS15455 0.39 -0.5 45,446 + EX31_RS15455 0.43 +0.0 45,519 + EX31_RS15455 0.50 -0.7 45,525 + EX31_RS15455 0.51 +0.1 45,525 + EX31_RS15455 0.51 -0.8 45,526 - EX31_RS15455 0.51 -0.2 45,553 + EX31_RS15455 0.54 -0.0 45,554 - EX31_RS15455 0.54 -2.0 45,669 + EX31_RS15455 0.65 +0.2 45,669 + EX31_RS15455 0.65 +1.7 45,788 + EX31_RS15455 0.77 -0.2 45,789 - EX31_RS15455 0.77 -0.3 45,799 - EX31_RS15455 0.78 -0.7 45,799 - EX31_RS15455 0.78 +0.1 45,837 + EX31_RS15455 0.81 +0.1 45,877 - EX31_RS15455 0.85 -0.4 45,933 + +0.2 45,936 + -0.5 45,937 - -0.1 46,051 + +0.7 46,097 + -0.4 46,100 + +0.1 46,100 + -0.1 46,100 + +0.8 46,100 + +0.2 46,100 + -0.2 46,100 + -0.8 46,100 + +0.8 46,101 - -0.4 46,101 - +1.6 46,101 - -0.5 46,101 - -0.3 46,101 - -1.4 46,101 - -0.6 46,102 + +0.3 46,102 + -0.6 46,102 + +0.0 46,102 + -0.3 46,102 + +0.1 46,102 + +0.9 46,102 + -0.3 46,103 - -0.4 46,140 + -1.7 46,140 + -1.0 46,141 - -0.9 46,141 - +0.0 46,168 + -0.8 46,169 - -1.5 46,187 + +0.1 46,187 + +0.0 46,187 + -0.1 46,193 + +0.1 46,193 + +0.4 46,193 + +0.3 46,193 + -1.0 46,193 + -0.4 46,193 + +0.1 46,193 + -0.6 46,193 + -1.3 46,193 + +0.2 46,193 + -0.0 46,193 + -0.4 46,193 + +0.8 46,193 + -0.4 46,193 + -1.5 46,193 + -0.1 46,193 + +0.1 46,193 + -0.6 46,193 + +0.1 46,193 + -0.4 46,193 + -0.3 46,193 + +0.2 46,193 + -0.3 46,193 + +1.0 46,193 + -0.7 46,193 + -0.3 46,194 - -0.2 46,194 - -0.9 46,194 - -0.1 46,194 - -0.5 46,194 - -1.2 46,194 - -0.6 46,194 - -0.0 46,194 - -2.6 46,194 - -0.8 46,194 - +0.3 46,194 - -0.1 46,194 - -1.1 46,194 - +1.3 46,194 - -1.0 46,194 - -0.1 46,194 - +0.1 46,237 + -0.1 46,237 + -0.6 46,238 - +0.0 46,238 - -0.7 46,244 + -1.3 46,244 + -0.5 46,244 + -0.2 46,244 + -0.3 46,244 + +0.8 46,245 - +0.2 46,245 - -1.1 46,245 - -0.2 46,245 - +0.4 46,245 - -0.3 46,245 - -0.4 46,245 - -0.3 46,245 - +0.1 46,248 + -0.5 46,248 + -0.2 46,248 + +1.5 46,248 + -0.1 46,248 + -0.2 46,248 + -0.2 46,248 + -0.3 46,248 + +0.7 46,248 + +0.1 46,248 + -0.1 46,248 + +0.4 46,248 + -0.3 46,248 + +0.0 46,248 + -0.9 46,248 + +0.9 46,248 + -0.8 46,248 + +0.8 46,248 + +1.0 46,248 + -0.1 46,248 + -0.5 46,248 + -0.4 46,249 - -1.5 46,249 - +0.8 46,249 - -0.3 46,249 - +0.8 46,249 - -1.0 46,249 - -1.4 46,249 - -0.2 46,249 - -1.7 46,249 - -0.2 46,249 - +0.6 46,249 - -1.3 46,249 - +0.9 46,249 - -0.2 46,249 - +0.3 46,250 + -0.5 46,250 + -1.0 46,250 + -0.3 46,250 + -0.1 46,250 + -0.5 46,250 + +0.1 46,250 + +0.3 46,250 + -0.1 46,250 + -0.6 46,250 + +0.5 46,250 + -0.4 46,250 + +0.1 46,250 + -0.4 46,250 + -0.7 46,250 + -1.0 46,250 + +1.1 46,250 + +0.7 46,250 + +0.2 46,250 + +0.7 46,250 + +0.3 46,250 + +0.7 46,250 + -0.5 46,250 + -0.8 46,250 + +0.1 46,250 + -0.7 46,250 + +0.1 46,250 + -0.1 46,250 + -0.5 46,251 - +0.3 46,251 - -2.8 46,251 - -0.5 46,251 - -1.6 46,251 - -1.5 46,251 - +0.5 46,251 - -0.7 46,251 - -0.3 46,251 - +0.4 46,251 - -1.3 46,251 - +0.2 46,251 - -0.9 46,251 - -0.8 46,251 - +0.2 46,251 - -2.0 46,252 + -0.6 46,253 + +0.1 46,253 + -0.0 46,253 + -0.3 46,253 + -1.1 46,253 + -0.5 46,253 + -0.2 46,253 + +0.4 46,254 - -0.5 46,254 - -0.3 46,254 - -2.3 46,254 - +0.1 46,254 - -0.3 46,348 - EX31_RS25410 0.85 -1.1 46,385 + -1.3 46,385 + +0.4 46,386 - +0.3 46,386 - +0.5 46,386 - -1.1 46,386 - -0.2 46,386 - -0.4 46,386 - -0.4 46,386 - +0.1 46,392 + -1.0 46,392 + -1.4 46,392 + -0.4 46,392 + +0.1 46,392 + +0.6 46,393 - +0.0 46,393 - +0.2 46,393 - +0.2 46,393 - +0.3 46,393 - +0.8 46,393 - +0.3 46,437 - -0.9 46,440 + -1.0 46,440 + -0.6 46,440 + -0.2 46,440 + -0.3 46,440 + +0.9 46,441 - -0.5 46,441 - +0.6 46,441 - -0.7 46,458 + -0.2 46,465 + -1.7 46,465 + +0.1 46,465 + +0.2 46,465 + -0.1 46,465 + -0.6 46,467 + -0.1 46,467 + -0.5 46,467 + -0.1 46,467 + -1.4 46,468 - -0.6 46,468 - -0.2 46,549 + -0.3 46,570 + -0.7 46,570 + +0.4 46,590 + +0.4 46,595 - +0.5 46,639 + -0.6 46,639 + +1.1 46,734 + +1.5 46,746 - -1.6 46,754 + +0.4 46,754 + +1.2 46,759 + -1.1 46,818 + +0.6 46,926 + -0.1 46,964 - -0.0 46,990 + +0.4 47,005 - EX31_RS15460 0.10 -1.1 47,009 + EX31_RS15460 0.12 -0.0 47,009 + EX31_RS15460 0.12 +0.9 47,023 + EX31_RS15460 0.19 +0.4 47,024 - EX31_RS15460 0.20 -0.0 47,024 - EX31_RS15460 0.20 -0.1 47,025 + EX31_RS15460 0.21 -0.0 47,150 - EX31_RS15460 0.85 -0.5 47,150 - EX31_RS15460 0.85 -0.6 47,164 + -0.3 47,165 - +0.6 47,192 + -0.4 47,192 + -1.1 47,206 + +0.1 47,219 + -0.5 47,234 + +0.5 47,245 - +0.4 47,245 - -0.3 47,252 + -0.4 47,253 - -0.4 47,261 - +0.5 47,273 + +0.0 47,273 + -0.0 47,273 + +0.2 47,273 + +0.2 47,273 + +0.1 47,273 + -0.2 47,273 + +0.7 47,273 + +0.4 47,273 + -0.4 47,273 + +0.9 47,273 + -0.4 47,273 + -1.9 47,273 + -0.1 47,274 - +0.1 47,274 - +0.9 47,274 - -0.5 47,274 - -0.2 47,274 - -0.7 47,274 - -0.2 47,274 - -0.2 47,274 - +0.1 47,276 + -1.6 47,277 - -0.4 47,277 - -1.7 47,277 - -0.0
Or see this region's nucleotide sequence