Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01675 and EX31_RS25075 are separated by 905 nucleotides EX31_RS25075 and EX31_RS01680 are separated by 209 nucleotides EX31_RS01680 and EX31_RS01685 are separated by 14 nucleotides
EX31_RS01675: EX31_RS01675 - hypothetical protein, at 369,119 to 369,388
_RS01675
EX31_RS25075: EX31_RS25075 - KTSC domain-containing protein, at 370,294 to 370,509
_RS25075
EX31_RS01680: EX31_RS01680 - antitermination protein Q, at 370,719 to 371,117
_RS01680
EX31_RS01685: EX31_RS01685 - DUF968 domain-containing protein, at 371,132 to 372,145
_RS01685
Position (kb) 370
371 Strain fitness (log2 ratio) -2
-1
0
1
2 at 369.317 kb on + strand, within EX31_RS01675 at 369.318 kb on - strand, within EX31_RS01675 at 369.354 kb on + strand, within EX31_RS01675 at 369.354 kb on + strand, within EX31_RS01675 at 369.354 kb on + strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.359 kb on - strand, within EX31_RS01675 at 369.437 kb on - strand at 369.559 kb on - strand at 369.562 kb on + strand at 369.563 kb on - strand at 369.641 kb on + strand at 369.641 kb on + strand at 369.642 kb on - strand at 369.642 kb on - strand at 369.690 kb on + strand at 369.845 kb on - strand at 369.863 kb on - strand at 369.863 kb on - strand at 369.865 kb on + strand at 369.866 kb on - strand at 369.866 kb on - strand at 369.866 kb on - strand at 369.953 kb on + strand at 369.968 kb on - strand at 369.972 kb on - strand at 369.972 kb on - strand at 370.035 kb on + strand at 370.036 kb on - strand at 370.090 kb on - strand at 370.135 kb on - strand at 370.209 kb on - strand at 370.209 kb on - strand at 370.334 kb on + strand, within EX31_RS25075 at 370.361 kb on + strand, within EX31_RS25075 at 370.367 kb on + strand, within EX31_RS25075 at 370.367 kb on + strand, within EX31_RS25075 at 370.367 kb on + strand, within EX31_RS25075 at 370.387 kb on - strand, within EX31_RS25075 at 370.390 kb on + strand, within EX31_RS25075 at 370.396 kb on + strand, within EX31_RS25075 at 370.397 kb on - strand, within EX31_RS25075 at 370.397 kb on - strand, within EX31_RS25075 at 370.397 kb on - strand, within EX31_RS25075 at 370.398 kb on + strand, within EX31_RS25075 at 370.398 kb on + strand, within EX31_RS25075 at 370.440 kb on - strand, within EX31_RS25075 at 370.479 kb on + strand, within EX31_RS25075 at 370.483 kb on + strand, within EX31_RS25075 at 370.483 kb on + strand, within EX31_RS25075 at 370.484 kb on - strand, within EX31_RS25075 at 370.484 kb on - strand, within EX31_RS25075 at 370.524 kb on - strand at 370.560 kb on + strand at 370.560 kb on + strand at 370.560 kb on + strand at 370.560 kb on + strand at 370.560 kb on + strand at 370.561 kb on - strand at 370.561 kb on - strand at 370.561 kb on - strand at 370.644 kb on - strand at 370.651 kb on - strand at 370.663 kb on + strand at 370.664 kb on - strand at 370.664 kb on - strand at 370.664 kb on - strand at 370.685 kb on + strand at 370.686 kb on - strand at 370.686 kb on - strand at 370.686 kb on - strand at 370.686 kb on - strand at 370.709 kb on + strand at 370.710 kb on - strand at 370.753 kb on + strand at 370.753 kb on + strand at 370.753 kb on + strand at 370.754 kb on - strand at 370.856 kb on - strand, within EX31_RS01680 at 370.862 kb on + strand, within EX31_RS01680 at 370.863 kb on - strand, within EX31_RS01680 at 370.866 kb on + strand, within EX31_RS01680 at 370.866 kb on + strand, within EX31_RS01680 at 370.866 kb on + strand, within EX31_RS01680 at 370.867 kb on - strand, within EX31_RS01680 at 370.914 kb on + strand, within EX31_RS01680 at 370.915 kb on - strand, within EX31_RS01680 at 370.915 kb on - strand, within EX31_RS01680 at 370.928 kb on + strand, within EX31_RS01680 at 370.950 kb on + strand, within EX31_RS01680 at 370.962 kb on + strand, within EX31_RS01680 at 370.963 kb on - strand, within EX31_RS01680 at 371.067 kb on - strand, within EX31_RS01680 at 371.180 kb on + strand at 371.181 kb on - strand at 371.181 kb on - strand at 371.181 kb on - strand at 371.398 kb on - strand, within EX31_RS01685 at 371.398 kb on - strand, within EX31_RS01685 at 371.398 kb on - strand, within EX31_RS01685 at 371.398 kb on - strand, within EX31_RS01685 at 371.439 kb on + strand, within EX31_RS01685 at 371.486 kb on + strand, within EX31_RS01685 at 371.487 kb on - strand, within EX31_RS01685 at 371.487 kb on - strand, within EX31_RS01685 at 371.487 kb on - strand, within EX31_RS01685
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 369,317 + EX31_RS01675 0.73 +0.4 369,318 - EX31_RS01675 0.74 +0.6 369,354 + EX31_RS01675 0.87 +1.0 369,354 + EX31_RS01675 0.87 -1.2 369,354 + EX31_RS01675 0.87 -1.2 369,355 - EX31_RS01675 0.87 -0.0 369,355 - EX31_RS01675 0.87 -1.6 369,355 - EX31_RS01675 0.87 +0.6 369,355 - EX31_RS01675 0.87 -0.4 369,358 + EX31_RS01675 0.89 -1.5 369,358 + EX31_RS01675 0.89 -0.1 369,358 + EX31_RS01675 0.89 -1.2 369,358 + EX31_RS01675 0.89 +0.6 369,358 + EX31_RS01675 0.89 -0.2 369,359 - EX31_RS01675 0.89 -0.5 369,437 - -0.2 369,559 - -0.3 369,562 + +1.1 369,563 - +0.7 369,641 + -0.5 369,641 + -0.7 369,642 - +0.1 369,642 - -0.8 369,690 + -0.9 369,845 - -0.0 369,863 - -0.3 369,863 - -0.6 369,865 + +1.8 369,866 - -0.5 369,866 - +0.6 369,866 - +0.1 369,953 + -0.3 369,968 - +0.7 369,972 - +0.3 369,972 - +0.6 370,035 + -1.6 370,036 - -1.1 370,090 - -0.2 370,135 - -0.7 370,209 - +0.5 370,209 - +0.7 370,334 + EX31_RS25075 0.19 -0.0 370,361 + EX31_RS25075 0.31 +0.7 370,367 + EX31_RS25075 0.34 -0.0 370,367 + EX31_RS25075 0.34 -0.5 370,367 + EX31_RS25075 0.34 -0.4 370,387 - EX31_RS25075 0.43 -0.7 370,390 + EX31_RS25075 0.44 -1.0 370,396 + EX31_RS25075 0.47 -0.6 370,397 - EX31_RS25075 0.48 -0.8 370,397 - EX31_RS25075 0.48 -1.0 370,397 - EX31_RS25075 0.48 +0.5 370,398 + EX31_RS25075 0.48 -1.2 370,398 + EX31_RS25075 0.48 -0.2 370,440 - EX31_RS25075 0.68 -0.2 370,479 + EX31_RS25075 0.86 -0.7 370,483 + EX31_RS25075 0.88 -0.6 370,483 + EX31_RS25075 0.88 -1.3 370,484 - EX31_RS25075 0.88 +0.7 370,484 - EX31_RS25075 0.88 +1.2 370,524 - -1.2 370,560 + +0.4 370,560 + +0.2 370,560 + -0.2 370,560 + +0.0 370,560 + -0.5 370,561 - -0.9 370,561 - -1.6 370,561 - -0.9 370,644 - +1.0 370,651 - +0.4 370,663 + -0.7 370,664 - +0.8 370,664 - +0.9 370,664 - +1.2 370,685 + +0.7 370,686 - -0.7 370,686 - -0.7 370,686 - +0.0 370,686 - -0.4 370,709 + -1.8 370,710 - -0.6 370,753 + -1.2 370,753 + -0.4 370,753 + -1.0 370,754 - +0.1 370,856 - EX31_RS01680 0.34 -0.2 370,862 + EX31_RS01680 0.36 -0.1 370,863 - EX31_RS01680 0.36 +0.9 370,866 + EX31_RS01680 0.37 -0.8 370,866 + EX31_RS01680 0.37 -0.7 370,866 + EX31_RS01680 0.37 -0.9 370,867 - EX31_RS01680 0.37 +0.0 370,914 + EX31_RS01680 0.49 -0.4 370,915 - EX31_RS01680 0.49 -0.8 370,915 - EX31_RS01680 0.49 -0.3 370,928 + EX31_RS01680 0.52 +1.7 370,950 + EX31_RS01680 0.58 -0.8 370,962 + EX31_RS01680 0.61 +0.9 370,963 - EX31_RS01680 0.61 +1.4 371,067 - EX31_RS01680 0.87 +1.6 371,180 + +0.6 371,181 - -0.9 371,181 - -0.2 371,181 - +0.9 371,398 - EX31_RS01685 0.26 -0.7 371,398 - EX31_RS01685 0.26 +0.4 371,398 - EX31_RS01685 0.26 +0.8 371,398 - EX31_RS01685 0.26 +0.6 371,439 + EX31_RS01685 0.30 -0.4 371,486 + EX31_RS01685 0.35 +0.6 371,487 - EX31_RS01685 0.35 +0.9 371,487 - EX31_RS01685 0.35 -0.3 371,487 - EX31_RS01685 0.35 -0.2
Or see this region's nucleotide sequence