Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24395 and EX31_RS24400 are separated by 600 nucleotides EX31_RS24400 and EX31_RS24405 are separated by 49 nucleotides EX31_RS24405 and EX31_RS24410 are separated by 142 nucleotides
EX31_RS24395: EX31_RS24395 - ribonuclease E, at 645,920 to 649,207
_RS24395
EX31_RS24400: EX31_RS24400 - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 649,808 to 650,770
_RS24400
EX31_RS24405: EX31_RS24405 - septum formation inhibitor Maf, at 650,820 to 651,413
_RS24405
EX31_RS24410: EX31_RS24410 - 23S rRNA accumulation protein YceD, at 651,556 to 652,080
_RS24410
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2 at 649.226 kb on - strand at 649.234 kb on - strand at 649.341 kb on - strand at 649.341 kb on - strand at 649.341 kb on - strand at 649.341 kb on - strand at 649.369 kb on - strand at 649.369 kb on - strand at 649.369 kb on - strand at 649.425 kb on - strand at 649.425 kb on - strand at 649.497 kb on - strand at 649.497 kb on - strand at 649.497 kb on - strand at 649.566 kb on - strand at 649.566 kb on - strand at 649.596 kb on - strand at 649.643 kb on + strand at 649.644 kb on - strand at 649.648 kb on + strand at 649.648 kb on + strand at 649.648 kb on + strand at 649.648 kb on + strand at 649.648 kb on + strand at 649.648 kb on + strand at 649.649 kb on - strand at 649.652 kb on + strand at 649.652 kb on + strand at 649.652 kb on + strand at 649.652 kb on + strand at 649.653 kb on - strand at 649.653 kb on - strand at 649.698 kb on - strand at 649.735 kb on + strand at 649.735 kb on + strand at 649.736 kb on - strand at 649.753 kb on + strand at 649.753 kb on + strand at 649.753 kb on + strand at 649.794 kb on + strand at 649.795 kb on - strand at 649.830 kb on + strand at 649.830 kb on + strand at 649.831 kb on - strand at 649.836 kb on + strand at 649.836 kb on + strand at 649.837 kb on - strand at 649.884 kb on + strand at 649.884 kb on + strand at 649.888 kb on + strand at 649.889 kb on - strand at 649.889 kb on - strand at 649.889 kb on - strand at 649.889 kb on - strand at 649.922 kb on + strand, within EX31_RS24400 at 649.922 kb on + strand, within EX31_RS24400 at 649.922 kb on + strand, within EX31_RS24400 at 649.923 kb on - strand, within EX31_RS24400 at 649.923 kb on - strand, within EX31_RS24400 at 649.923 kb on - strand, within EX31_RS24400 at 649.936 kb on + strand, within EX31_RS24400 at 649.953 kb on + strand, within EX31_RS24400 at 649.957 kb on + strand, within EX31_RS24400 at 649.957 kb on + strand, within EX31_RS24400 at 649.957 kb on + strand, within EX31_RS24400 at 649.958 kb on - strand, within EX31_RS24400 at 649.958 kb on - strand, within EX31_RS24400 at 649.969 kb on + strand, within EX31_RS24400 at 649.980 kb on - strand, within EX31_RS24400 at 649.981 kb on + strand, within EX31_RS24400 at 649.986 kb on + strand, within EX31_RS24400 at 649.986 kb on + strand, within EX31_RS24400 at 649.986 kb on + strand, within EX31_RS24400 at 649.986 kb on + strand, within EX31_RS24400 at 650.066 kb on - strand, within EX31_RS24400 at 650.094 kb on + strand, within EX31_RS24400 at 650.094 kb on + strand, within EX31_RS24400 at 650.094 kb on + strand, within EX31_RS24400 at 650.094 kb on + strand, within EX31_RS24400 at 650.094 kb on + strand, within EX31_RS24400 at 650.094 kb on + strand, within EX31_RS24400 at 650.094 kb on + strand, within EX31_RS24400 at 650.096 kb on + strand, within EX31_RS24400 at 650.096 kb on + strand, within EX31_RS24400 at 650.096 kb on + strand, within EX31_RS24400 at 650.096 kb on + strand, within EX31_RS24400 at 650.096 kb on + strand, within EX31_RS24400 at 650.096 kb on + strand, within EX31_RS24400 at 650.097 kb on - strand, within EX31_RS24400 at 650.122 kb on + strand, within EX31_RS24400 at 650.125 kb on + strand, within EX31_RS24400 at 650.126 kb on - strand, within EX31_RS24400 at 650.146 kb on - strand, within EX31_RS24400 at 650.163 kb on + strand, within EX31_RS24400 at 650.245 kb on + strand, within EX31_RS24400 at 650.245 kb on + strand, within EX31_RS24400 at 650.295 kb on + strand, within EX31_RS24400 at 650.295 kb on + strand, within EX31_RS24400 at 650.295 kb on + strand, within EX31_RS24400 at 650.295 kb on + strand, within EX31_RS24400 at 650.295 kb on + strand, within EX31_RS24400 at 650.295 kb on + strand, within EX31_RS24400 at 650.295 kb on + strand, within EX31_RS24400 at 650.295 kb on + strand, within EX31_RS24400 at 650.295 kb on + strand, within EX31_RS24400 at 650.296 kb on - strand, within EX31_RS24400 at 650.296 kb on - strand, within EX31_RS24400 at 650.334 kb on - strand, within EX31_RS24400 at 650.334 kb on - strand, within EX31_RS24400 at 650.391 kb on + strand, within EX31_RS24400 at 650.422 kb on + strand, within EX31_RS24400 at 650.423 kb on - strand, within EX31_RS24400 at 650.423 kb on - strand, within EX31_RS24400 at 650.435 kb on - strand, within EX31_RS24400 at 650.588 kb on + strand, within EX31_RS24400 at 650.640 kb on + strand, within EX31_RS24400 at 650.698 kb on + strand at 650.698 kb on + strand at 650.699 kb on - strand at 650.719 kb on + strand at 650.719 kb on + strand at 650.719 kb on + strand at 650.720 kb on - strand at 650.745 kb on + strand at 650.768 kb on + strand at 650.768 kb on + strand at 650.768 kb on + strand at 650.779 kb on + strand at 650.782 kb on + strand at 650.821 kb on + strand at 650.821 kb on + strand at 650.822 kb on - strand at 650.822 kb on - strand at 650.822 kb on - strand at 650.822 kb on - strand at 650.824 kb on - strand at 650.824 kb on - strand at 650.824 kb on - strand at 650.870 kb on + strand at 650.949 kb on - strand, within EX31_RS24405 at 650.968 kb on + strand, within EX31_RS24405 at 650.968 kb on + strand, within EX31_RS24405 at 650.968 kb on + strand, within EX31_RS24405 at 650.968 kb on + strand, within EX31_RS24405 at 650.968 kb on + strand, within EX31_RS24405 at 650.969 kb on - strand, within EX31_RS24405 at 650.969 kb on - strand, within EX31_RS24405 at 650.969 kb on - strand, within EX31_RS24405 at 650.969 kb on - strand, within EX31_RS24405 at 650.969 kb on - strand, within EX31_RS24405 at 650.969 kb on - strand, within EX31_RS24405 at 650.969 kb on - strand, within EX31_RS24405 at 650.969 kb on - strand, within EX31_RS24405 at 651.013 kb on - strand, within EX31_RS24405 at 651.045 kb on + strand, within EX31_RS24405 at 651.045 kb on + strand, within EX31_RS24405 at 651.046 kb on - strand, within EX31_RS24405 at 651.046 kb on - strand, within EX31_RS24405 at 651.046 kb on - strand, within EX31_RS24405 at 651.046 kb on - strand, within EX31_RS24405 at 651.076 kb on + strand, within EX31_RS24405 at 651.076 kb on + strand, within EX31_RS24405 at 651.076 kb on + strand, within EX31_RS24405 at 651.076 kb on + strand, within EX31_RS24405 at 651.076 kb on + strand, within EX31_RS24405 at 651.076 kb on + strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.077 kb on - strand, within EX31_RS24405 at 651.094 kb on + strand, within EX31_RS24405 at 651.094 kb on + strand, within EX31_RS24405 at 651.095 kb on - strand, within EX31_RS24405 at 651.095 kb on - strand, within EX31_RS24405 at 651.095 kb on - strand, within EX31_RS24405 at 651.334 kb on - strand, within EX31_RS24405 at 651.433 kb on + strand at 651.434 kb on - strand at 651.504 kb on + strand at 651.541 kb on + strand at 651.544 kb on + strand at 651.619 kb on + strand, within EX31_RS24410 at 651.619 kb on + strand, within EX31_RS24410 at 651.621 kb on + strand, within EX31_RS24410 at 651.631 kb on + strand, within EX31_RS24410 at 651.631 kb on + strand, within EX31_RS24410 at 651.631 kb on + strand, within EX31_RS24410 at 651.631 kb on + strand, within EX31_RS24410 at 651.633 kb on + strand, within EX31_RS24410 at 651.633 kb on + strand, within EX31_RS24410 at 651.633 kb on + strand, within EX31_RS24410 at 651.633 kb on + strand, within EX31_RS24410 at 651.687 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410 at 651.689 kb on + strand, within EX31_RS24410
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 649,226 - -0.7 649,234 - -0.5 649,341 - +0.9 649,341 - -0.4 649,341 - -0.1 649,341 - +0.8 649,369 - +0.3 649,369 - -0.1 649,369 - +0.1 649,425 - -0.2 649,425 - -1.9 649,497 - -0.2 649,497 - +0.5 649,497 - +0.7 649,566 - -0.4 649,566 - +0.8 649,596 - -0.9 649,643 + +0.1 649,644 - -0.3 649,648 + -0.1 649,648 + +1.2 649,648 + -0.3 649,648 + -0.2 649,648 + -0.2 649,648 + +0.3 649,649 - +0.3 649,652 + +0.6 649,652 + +0.1 649,652 + -0.2 649,652 + -0.6 649,653 - -0.1 649,653 - +0.3 649,698 - -0.9 649,735 + -0.9 649,735 + -0.5 649,736 - -0.5 649,753 + -1.1 649,753 + -0.5 649,753 + -1.1 649,794 + -0.4 649,795 - +0.1 649,830 + -1.6 649,830 + -0.3 649,831 - -0.7 649,836 + +0.8 649,836 + +0.9 649,837 - +1.3 649,884 + -2.4 649,884 + -1.0 649,888 + -0.7 649,889 - +0.2 649,889 - -2.1 649,889 - +1.3 649,889 - -0.0 649,922 + EX31_RS24400 0.12 +0.9 649,922 + EX31_RS24400 0.12 +1.7 649,922 + EX31_RS24400 0.12 +0.5 649,923 - EX31_RS24400 0.12 +1.0 649,923 - EX31_RS24400 0.12 +1.1 649,923 - EX31_RS24400 0.12 -0.4 649,936 + EX31_RS24400 0.13 -0.1 649,953 + EX31_RS24400 0.15 -0.2 649,957 + EX31_RS24400 0.15 +1.1 649,957 + EX31_RS24400 0.15 -0.4 649,957 + EX31_RS24400 0.15 +1.8 649,958 - EX31_RS24400 0.16 -0.1 649,958 - EX31_RS24400 0.16 +1.3 649,969 + EX31_RS24400 0.17 -0.1 649,980 - EX31_RS24400 0.18 +0.6 649,981 + EX31_RS24400 0.18 -1.1 649,986 + EX31_RS24400 0.18 +1.8 649,986 + EX31_RS24400 0.18 +0.5 649,986 + EX31_RS24400 0.18 +0.3 649,986 + EX31_RS24400 0.18 +0.5 650,066 - EX31_RS24400 0.27 -1.2 650,094 + EX31_RS24400 0.30 -0.3 650,094 + EX31_RS24400 0.30 -0.4 650,094 + EX31_RS24400 0.30 +1.2 650,094 + EX31_RS24400 0.30 +0.8 650,094 + EX31_RS24400 0.30 +1.7 650,094 + EX31_RS24400 0.30 +1.0 650,094 + EX31_RS24400 0.30 +0.9 650,096 + EX31_RS24400 0.30 +0.9 650,096 + EX31_RS24400 0.30 -0.9 650,096 + EX31_RS24400 0.30 +1.0 650,096 + EX31_RS24400 0.30 -0.9 650,096 + EX31_RS24400 0.30 +1.1 650,096 + EX31_RS24400 0.30 +1.2 650,097 - EX31_RS24400 0.30 -1.7 650,122 + EX31_RS24400 0.33 -1.7 650,125 + EX31_RS24400 0.33 +0.1 650,126 - EX31_RS24400 0.33 +1.2 650,146 - EX31_RS24400 0.35 +0.8 650,163 + EX31_RS24400 0.37 -0.3 650,245 + EX31_RS24400 0.45 +0.1 650,245 + EX31_RS24400 0.45 +0.6 650,295 + EX31_RS24400 0.51 +1.5 650,295 + EX31_RS24400 0.51 -0.4 650,295 + EX31_RS24400 0.51 -0.1 650,295 + EX31_RS24400 0.51 +0.0 650,295 + EX31_RS24400 0.51 -0.2 650,295 + EX31_RS24400 0.51 +0.8 650,295 + EX31_RS24400 0.51 +0.1 650,295 + EX31_RS24400 0.51 +0.0 650,295 + EX31_RS24400 0.51 -0.7 650,296 - EX31_RS24400 0.51 +1.1 650,296 - EX31_RS24400 0.51 +0.8 650,334 - EX31_RS24400 0.55 -0.3 650,334 - EX31_RS24400 0.55 -0.1 650,391 + EX31_RS24400 0.61 +0.1 650,422 + EX31_RS24400 0.64 +0.1 650,423 - EX31_RS24400 0.64 -1.3 650,423 - EX31_RS24400 0.64 -1.2 650,435 - EX31_RS24400 0.65 +0.5 650,588 + EX31_RS24400 0.81 +0.1 650,640 + EX31_RS24400 0.86 +0.3 650,698 + +0.5 650,698 + -0.6 650,699 - -0.3 650,719 + +1.2 650,719 + -0.9 650,719 + -0.0 650,720 - +0.0 650,745 + -0.4 650,768 + +0.1 650,768 + +0.3 650,768 + +0.0 650,779 + -0.7 650,782 + +1.1 650,821 + -0.9 650,821 + -0.4 650,822 - -0.4 650,822 - -0.7 650,822 - +1.2 650,822 - +0.1 650,824 - +0.5 650,824 - +0.8 650,824 - -1.3 650,870 + -0.3 650,949 - EX31_RS24405 0.22 +0.7 650,968 + EX31_RS24405 0.25 -0.5 650,968 + EX31_RS24405 0.25 -0.3 650,968 + EX31_RS24405 0.25 +0.3 650,968 + EX31_RS24405 0.25 +0.9 650,968 + EX31_RS24405 0.25 -1.1 650,969 - EX31_RS24405 0.25 -0.8 650,969 - EX31_RS24405 0.25 +0.7 650,969 - EX31_RS24405 0.25 +0.2 650,969 - EX31_RS24405 0.25 -0.1 650,969 - EX31_RS24405 0.25 +0.8 650,969 - EX31_RS24405 0.25 +1.1 650,969 - EX31_RS24405 0.25 -1.6 650,969 - EX31_RS24405 0.25 -1.1 651,013 - EX31_RS24405 0.32 +0.6 651,045 + EX31_RS24405 0.38 +0.4 651,045 + EX31_RS24405 0.38 +0.3 651,046 - EX31_RS24405 0.38 +0.2 651,046 - EX31_RS24405 0.38 -0.1 651,046 - EX31_RS24405 0.38 -0.4 651,046 - EX31_RS24405 0.38 +0.4 651,076 + EX31_RS24405 0.43 +2.1 651,076 + EX31_RS24405 0.43 -0.2 651,076 + EX31_RS24405 0.43 +0.8 651,076 + EX31_RS24405 0.43 +1.6 651,076 + EX31_RS24405 0.43 -0.5 651,076 + EX31_RS24405 0.43 -0.9 651,077 - EX31_RS24405 0.43 +0.6 651,077 - EX31_RS24405 0.43 +1.2 651,077 - EX31_RS24405 0.43 -0.1 651,077 - EX31_RS24405 0.43 +0.4 651,077 - EX31_RS24405 0.43 +1.1 651,077 - EX31_RS24405 0.43 -0.7 651,077 - EX31_RS24405 0.43 +0.2 651,077 - EX31_RS24405 0.43 -0.3 651,077 - EX31_RS24405 0.43 +0.6 651,077 - EX31_RS24405 0.43 +0.1 651,094 + EX31_RS24405 0.46 -1.0 651,094 + EX31_RS24405 0.46 -0.5 651,095 - EX31_RS24405 0.46 +0.2 651,095 - EX31_RS24405 0.46 +0.1 651,095 - EX31_RS24405 0.46 +0.7 651,334 - EX31_RS24405 0.87 +0.7 651,433 + +0.0 651,434 - +0.4 651,504 + -0.2 651,541 + +0.7 651,544 + +0.4 651,619 + EX31_RS24410 0.12 -0.8 651,619 + EX31_RS24410 0.12 -0.7 651,621 + EX31_RS24410 0.12 +0.7 651,631 + EX31_RS24410 0.14 +0.6 651,631 + EX31_RS24410 0.14 -0.1 651,631 + EX31_RS24410 0.14 +1.5 651,631 + EX31_RS24410 0.14 +1.2 651,633 + EX31_RS24410 0.15 -0.3 651,633 + EX31_RS24410 0.15 -0.6 651,633 + EX31_RS24410 0.15 -1.0 651,633 + EX31_RS24410 0.15 +0.1 651,687 + EX31_RS24410 0.25 +1.9 651,689 + EX31_RS24410 0.25 +0.9 651,689 + EX31_RS24410 0.25 +0.4 651,689 + EX31_RS24410 0.25 +0.6 651,689 + EX31_RS24410 0.25 +0.0 651,689 + EX31_RS24410 0.25 +1.2 651,689 + EX31_RS24410 0.25 -0.6 651,689 + EX31_RS24410 0.25 -0.3 651,689 + EX31_RS24410 0.25 +0.4 651,689 + EX31_RS24410 0.25 -0.2 651,689 + EX31_RS24410 0.25 +0.1 651,689 + EX31_RS24410 0.25 -0.2
Or see this region's nucleotide sequence