Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21105 and EX31_RS21110 overlap by 1 nucleotides EX31_RS21110 and EX31_RS21115 are separated by 2 nucleotides EX31_RS21115 and EX31_RS21120 are separated by 24 nucleotides
EX31_RS21105: EX31_RS21105 - amino acid ABC transporter ATP-binding protein, at 865,207 to 865,959
_RS21105
EX31_RS21110: EX31_RS21110 - amino acid ABC transporter permease, at 865,959 to 866,609
_RS21110
EX31_RS21115: EX31_RS21115 - amino acid ABC transporter permease, at 866,612 to 867,277
_RS21115
EX31_RS21120: EX31_RS21120 - transporter substrate-binding domain-containing protein, at 867,302 to 868,093
_RS21120
Position (kb) 866
867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 865.830 kb on + strand, within EX31_RS21105 at 865.831 kb on - strand, within EX31_RS21105 at 865.906 kb on + strand at 865.906 kb on + strand at 865.906 kb on + strand at 865.907 kb on - strand at 865.960 kb on + strand at 865.961 kb on - strand at 866.047 kb on - strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.071 kb on + strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.072 kb on - strand, within EX31_RS21110 at 866.289 kb on - strand, within EX31_RS21110 at 866.289 kb on - strand, within EX31_RS21110 at 866.314 kb on + strand, within EX31_RS21110 at 866.315 kb on - strand, within EX31_RS21110 at 866.315 kb on - strand, within EX31_RS21110 at 866.324 kb on + strand, within EX31_RS21110 at 866.324 kb on + strand, within EX31_RS21110 at 866.325 kb on - strand, within EX31_RS21110 at 866.326 kb on + strand, within EX31_RS21110 at 866.326 kb on + strand, within EX31_RS21110 at 866.326 kb on + strand, within EX31_RS21110 at 866.326 kb on + strand, within EX31_RS21110 at 866.326 kb on + strand, within EX31_RS21110 at 866.327 kb on - strand, within EX31_RS21110 at 866.327 kb on - strand, within EX31_RS21110 at 866.327 kb on - strand, within EX31_RS21110 at 866.327 kb on - strand, within EX31_RS21110 at 866.369 kb on + strand, within EX31_RS21110 at 866.369 kb on + strand, within EX31_RS21110 at 866.370 kb on - strand, within EX31_RS21110 at 866.407 kb on - strand, within EX31_RS21110 at 866.407 kb on - strand, within EX31_RS21110 at 866.407 kb on - strand, within EX31_RS21110 at 866.447 kb on - strand, within EX31_RS21110 at 866.447 kb on - strand, within EX31_RS21110 at 866.447 kb on - strand, within EX31_RS21110 at 866.551 kb on - strand at 866.551 kb on - strand at 866.551 kb on - strand at 866.685 kb on + strand, within EX31_RS21115 at 866.686 kb on - strand, within EX31_RS21115 at 866.706 kb on + strand, within EX31_RS21115 at 866.706 kb on + strand, within EX31_RS21115 at 866.706 kb on + strand, within EX31_RS21115 at 866.706 kb on + strand, within EX31_RS21115 at 866.706 kb on + strand, within EX31_RS21115 at 866.706 kb on + strand, within EX31_RS21115 at 866.706 kb on + strand, within EX31_RS21115 at 866.706 kb on + strand, within EX31_RS21115 at 866.706 kb on + strand, within EX31_RS21115 at 866.707 kb on - strand, within EX31_RS21115 at 866.707 kb on - strand, within EX31_RS21115 at 866.707 kb on - strand, within EX31_RS21115 at 866.707 kb on - strand, within EX31_RS21115 at 866.707 kb on - strand, within EX31_RS21115 at 866.707 kb on - strand, within EX31_RS21115 at 866.707 kb on - strand, within EX31_RS21115 at 866.707 kb on - strand, within EX31_RS21115 at 866.707 kb on - strand, within EX31_RS21115 at 866.741 kb on + strand, within EX31_RS21115 at 866.741 kb on + strand, within EX31_RS21115 at 866.741 kb on + strand, within EX31_RS21115 at 866.741 kb on + strand, within EX31_RS21115 at 866.742 kb on - strand, within EX31_RS21115 at 866.742 kb on - strand, within EX31_RS21115 at 866.769 kb on + strand, within EX31_RS21115 at 866.770 kb on - strand, within EX31_RS21115 at 866.835 kb on + strand, within EX31_RS21115 at 866.836 kb on - strand, within EX31_RS21115 at 866.892 kb on - strand, within EX31_RS21115 at 866.968 kb on - strand, within EX31_RS21115 at 866.968 kb on - strand, within EX31_RS21115 at 867.079 kb on + strand, within EX31_RS21115 at 867.080 kb on - strand, within EX31_RS21115 at 867.080 kb on - strand, within EX31_RS21115 at 867.080 kb on - strand, within EX31_RS21115 at 867.080 kb on - strand, within EX31_RS21115 at 867.080 kb on - strand, within EX31_RS21115 at 867.083 kb on - strand, within EX31_RS21115 at 867.099 kb on + strand, within EX31_RS21115 at 867.099 kb on + strand, within EX31_RS21115 at 867.099 kb on + strand, within EX31_RS21115 at 867.099 kb on + strand, within EX31_RS21115 at 867.099 kb on + strand, within EX31_RS21115 at 867.100 kb on - strand, within EX31_RS21115 at 867.100 kb on - strand, within EX31_RS21115 at 867.100 kb on - strand, within EX31_RS21115 at 867.100 kb on - strand, within EX31_RS21115 at 867.100 kb on - strand, within EX31_RS21115 at 867.100 kb on - strand, within EX31_RS21115 at 867.100 kb on - strand, within EX31_RS21115 at 867.100 kb on - strand, within EX31_RS21115 at 867.100 kb on - strand, within EX31_RS21115 at 867.127 kb on + strand, within EX31_RS21115 at 867.127 kb on + strand, within EX31_RS21115 at 867.127 kb on + strand, within EX31_RS21115 at 867.127 kb on + strand, within EX31_RS21115 at 867.128 kb on - strand, within EX31_RS21115 at 867.192 kb on - strand, within EX31_RS21115 at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.238 kb on + strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.239 kb on - strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.240 kb on + strand at 867.241 kb on - strand at 867.241 kb on - strand at 867.241 kb on - strand at 867.241 kb on - strand at 867.241 kb on - strand at 867.241 kb on - strand at 867.241 kb on - strand at 867.241 kb on - strand at 867.241 kb on - strand at 867.249 kb on - strand at 867.263 kb on - strand at 867.270 kb on + strand at 867.270 kb on + strand at 867.271 kb on - strand at 867.271 kb on - strand at 867.271 kb on - strand at 867.355 kb on + strand at 867.356 kb on - strand at 867.356 kb on - strand at 867.356 kb on - strand at 867.356 kb on - strand at 867.356 kb on - strand at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.441 kb on + strand, within EX31_RS21120 at 867.442 kb on - strand, within EX31_RS21120 at 867.442 kb on - strand, within EX31_RS21120 at 867.442 kb on - strand, within EX31_RS21120 at 867.442 kb on - strand, within EX31_RS21120 at 867.442 kb on - strand, within EX31_RS21120 at 867.442 kb on - strand, within EX31_RS21120 at 867.537 kb on + strand, within EX31_RS21120 at 867.538 kb on - strand, within EX31_RS21120 at 867.538 kb on - strand, within EX31_RS21120 at 867.538 kb on - strand, within EX31_RS21120 at 867.538 kb on - strand, within EX31_RS21120 at 867.538 kb on - strand, within EX31_RS21120 at 867.559 kb on - strand, within EX31_RS21120 at 867.559 kb on - strand, within EX31_RS21120 at 867.559 kb on - strand, within EX31_RS21120 at 867.742 kb on - strand, within EX31_RS21120 at 867.742 kb on - strand, within EX31_RS21120 at 867.815 kb on - strand, within EX31_RS21120 at 867.828 kb on + strand, within EX31_RS21120 at 867.872 kb on - strand, within EX31_RS21120 at 867.872 kb on - strand, within EX31_RS21120 at 867.894 kb on + strand, within EX31_RS21120 at 867.894 kb on + strand, within EX31_RS21120 at 867.895 kb on - strand, within EX31_RS21120 at 867.895 kb on - strand, within EX31_RS21120 at 867.895 kb on - strand, within EX31_RS21120 at 867.915 kb on + strand, within EX31_RS21120 at 867.915 kb on + strand, within EX31_RS21120 at 868.025 kb on + strand at 868.093 kb on + strand at 868.093 kb on + strand at 868.093 kb on + strand at 868.093 kb on + strand at 868.093 kb on + strand at 868.093 kb on + strand at 868.093 kb on + strand at 868.093 kb on + strand at 868.093 kb on + strand at 868.094 kb on - strand at 868.094 kb on - strand at 868.094 kb on - strand at 868.094 kb on - strand at 868.094 kb on - strand at 868.202 kb on + strand at 868.202 kb on + strand at 868.215 kb on + strand at 868.215 kb on + strand at 868.216 kb on - strand at 868.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 865,830 + EX31_RS21105 0.83 -1.0 865,831 - EX31_RS21105 0.83 +0.7 865,906 + -0.1 865,906 + +0.6 865,906 + -0.5 865,907 - -0.5 865,960 + -1.1 865,961 - +0.7 866,047 - EX31_RS21110 0.14 -0.2 866,071 + EX31_RS21110 0.17 +0.4 866,071 + EX31_RS21110 0.17 -0.6 866,071 + EX31_RS21110 0.17 +0.6 866,071 + EX31_RS21110 0.17 -0.6 866,071 + EX31_RS21110 0.17 +0.1 866,071 + EX31_RS21110 0.17 +0.6 866,071 + EX31_RS21110 0.17 +0.3 866,071 + EX31_RS21110 0.17 +1.1 866,071 + EX31_RS21110 0.17 +0.0 866,071 + EX31_RS21110 0.17 -0.5 866,072 - EX31_RS21110 0.17 +0.7 866,072 - EX31_RS21110 0.17 +0.8 866,072 - EX31_RS21110 0.17 -0.3 866,072 - EX31_RS21110 0.17 +0.0 866,072 - EX31_RS21110 0.17 +0.7 866,072 - EX31_RS21110 0.17 +0.2 866,072 - EX31_RS21110 0.17 -0.2 866,072 - EX31_RS21110 0.17 +1.1 866,072 - EX31_RS21110 0.17 -0.7 866,072 - EX31_RS21110 0.17 +0.9 866,072 - EX31_RS21110 0.17 -1.1 866,072 - EX31_RS21110 0.17 +0.5 866,072 - EX31_RS21110 0.17 -0.5 866,289 - EX31_RS21110 0.51 +0.7 866,289 - EX31_RS21110 0.51 +0.1 866,314 + EX31_RS21110 0.55 +0.5 866,315 - EX31_RS21110 0.55 -0.1 866,315 - EX31_RS21110 0.55 +0.3 866,324 + EX31_RS21110 0.56 +0.5 866,324 + EX31_RS21110 0.56 +0.2 866,325 - EX31_RS21110 0.56 +0.3 866,326 + EX31_RS21110 0.56 -0.2 866,326 + EX31_RS21110 0.56 +0.5 866,326 + EX31_RS21110 0.56 -0.5 866,326 + EX31_RS21110 0.56 -0.5 866,326 + EX31_RS21110 0.56 -0.6 866,327 - EX31_RS21110 0.57 +0.8 866,327 - EX31_RS21110 0.57 -0.4 866,327 - EX31_RS21110 0.57 +0.4 866,327 - EX31_RS21110 0.57 +0.3 866,369 + EX31_RS21110 0.63 -0.1 866,369 + EX31_RS21110 0.63 -0.2 866,370 - EX31_RS21110 0.63 +0.5 866,407 - EX31_RS21110 0.69 +0.0 866,407 - EX31_RS21110 0.69 +0.1 866,407 - EX31_RS21110 0.69 -1.1 866,447 - EX31_RS21110 0.75 +0.4 866,447 - EX31_RS21110 0.75 +0.7 866,447 - EX31_RS21110 0.75 +0.8 866,551 - -0.3 866,551 - +0.3 866,551 - +0.9 866,685 + EX31_RS21115 0.11 -0.5 866,686 - EX31_RS21115 0.11 +0.1 866,706 + EX31_RS21115 0.14 -0.0 866,706 + EX31_RS21115 0.14 +0.0 866,706 + EX31_RS21115 0.14 +0.5 866,706 + EX31_RS21115 0.14 +0.6 866,706 + EX31_RS21115 0.14 +0.3 866,706 + EX31_RS21115 0.14 -0.2 866,706 + EX31_RS21115 0.14 +0.8 866,706 + EX31_RS21115 0.14 +0.4 866,706 + EX31_RS21115 0.14 +0.9 866,707 - EX31_RS21115 0.14 -0.9 866,707 - EX31_RS21115 0.14 +1.2 866,707 - EX31_RS21115 0.14 -0.2 866,707 - EX31_RS21115 0.14 +0.0 866,707 - EX31_RS21115 0.14 +0.2 866,707 - EX31_RS21115 0.14 +0.9 866,707 - EX31_RS21115 0.14 -0.2 866,707 - EX31_RS21115 0.14 -0.3 866,707 - EX31_RS21115 0.14 +0.2 866,741 + EX31_RS21115 0.19 -0.5 866,741 + EX31_RS21115 0.19 -1.3 866,741 + EX31_RS21115 0.19 +0.1 866,741 + EX31_RS21115 0.19 -0.3 866,742 - EX31_RS21115 0.20 +0.3 866,742 - EX31_RS21115 0.20 -0.0 866,769 + EX31_RS21115 0.24 +0.4 866,770 - EX31_RS21115 0.24 +0.0 866,835 + EX31_RS21115 0.33 +0.6 866,836 - EX31_RS21115 0.34 +0.5 866,892 - EX31_RS21115 0.42 -0.5 866,968 - EX31_RS21115 0.53 -0.3 866,968 - EX31_RS21115 0.53 +0.3 867,079 + EX31_RS21115 0.70 -1.2 867,080 - EX31_RS21115 0.70 +0.4 867,080 - EX31_RS21115 0.70 -1.6 867,080 - EX31_RS21115 0.70 -0.7 867,080 - EX31_RS21115 0.70 -0.2 867,080 - EX31_RS21115 0.70 +0.0 867,083 - EX31_RS21115 0.71 +1.0 867,099 + EX31_RS21115 0.73 +0.3 867,099 + EX31_RS21115 0.73 -0.6 867,099 + EX31_RS21115 0.73 +0.7 867,099 + EX31_RS21115 0.73 -0.7 867,099 + EX31_RS21115 0.73 +1.3 867,100 - EX31_RS21115 0.73 -0.3 867,100 - EX31_RS21115 0.73 -1.0 867,100 - EX31_RS21115 0.73 +0.1 867,100 - EX31_RS21115 0.73 +0.2 867,100 - EX31_RS21115 0.73 +0.4 867,100 - EX31_RS21115 0.73 +1.3 867,100 - EX31_RS21115 0.73 +0.5 867,100 - EX31_RS21115 0.73 -0.6 867,100 - EX31_RS21115 0.73 +0.0 867,127 + EX31_RS21115 0.77 +0.1 867,127 + EX31_RS21115 0.77 +0.9 867,127 + EX31_RS21115 0.77 +1.0 867,127 + EX31_RS21115 0.77 +0.1 867,128 - EX31_RS21115 0.77 +0.5 867,192 - EX31_RS21115 0.87 +0.5 867,238 + +0.2 867,238 + -0.7 867,238 + +0.3 867,238 + +0.2 867,238 + -0.7 867,238 + -0.4 867,238 + -0.3 867,238 + +0.3 867,238 + -0.6 867,238 + -0.0 867,238 + -0.0 867,238 + -0.1 867,238 + -0.9 867,239 - -0.5 867,239 - +2.0 867,239 - +0.1 867,239 - +0.7 867,239 - -0.8 867,239 - +0.1 867,239 - +0.4 867,239 - -0.3 867,239 - -0.9 867,239 - +0.1 867,239 - -0.2 867,239 - -0.0 867,239 - +0.4 867,240 + +1.0 867,240 + +0.0 867,240 + +0.2 867,240 + +0.2 867,240 + -1.0 867,240 + -0.4 867,240 + +0.2 867,240 + -0.6 867,240 + +0.4 867,240 + +0.0 867,240 + -0.5 867,240 + -0.2 867,241 - +0.2 867,241 - +0.7 867,241 - +0.8 867,241 - +0.4 867,241 - +0.8 867,241 - -0.9 867,241 - -0.6 867,241 - +0.4 867,241 - -0.2 867,249 - -0.4 867,263 - +0.4 867,270 + -0.6 867,270 + +0.4 867,271 - -0.2 867,271 - -0.5 867,271 - -0.5 867,355 + -0.3 867,356 - +0.6 867,356 - +0.4 867,356 - +0.1 867,356 - +0.9 867,356 - +0.0 867,441 + EX31_RS21120 0.18 +0.1 867,441 + EX31_RS21120 0.18 -2.1 867,441 + EX31_RS21120 0.18 -0.8 867,441 + EX31_RS21120 0.18 +0.4 867,441 + EX31_RS21120 0.18 -2.8 867,441 + EX31_RS21120 0.18 +0.2 867,441 + EX31_RS21120 0.18 +0.4 867,441 + EX31_RS21120 0.18 -0.2 867,441 + EX31_RS21120 0.18 +0.3 867,441 + EX31_RS21120 0.18 +0.9 867,441 + EX31_RS21120 0.18 +0.3 867,441 + EX31_RS21120 0.18 -0.3 867,442 - EX31_RS21120 0.18 +0.4 867,442 - EX31_RS21120 0.18 -0.1 867,442 - EX31_RS21120 0.18 +0.4 867,442 - EX31_RS21120 0.18 +0.0 867,442 - EX31_RS21120 0.18 +0.0 867,442 - EX31_RS21120 0.18 -0.5 867,537 + EX31_RS21120 0.30 +0.7 867,538 - EX31_RS21120 0.30 -0.3 867,538 - EX31_RS21120 0.30 +0.0 867,538 - EX31_RS21120 0.30 -0.2 867,538 - EX31_RS21120 0.30 +0.1 867,538 - EX31_RS21120 0.30 -0.6 867,559 - EX31_RS21120 0.32 -0.9 867,559 - EX31_RS21120 0.32 -0.0 867,559 - EX31_RS21120 0.32 -0.5 867,742 - EX31_RS21120 0.56 -0.1 867,742 - EX31_RS21120 0.56 -0.1 867,815 - EX31_RS21120 0.65 +0.2 867,828 + EX31_RS21120 0.66 +0.1 867,872 - EX31_RS21120 0.72 +0.8 867,872 - EX31_RS21120 0.72 +1.0 867,894 + EX31_RS21120 0.75 -1.3 867,894 + EX31_RS21120 0.75 -1.6 867,895 - EX31_RS21120 0.75 +0.9 867,895 - EX31_RS21120 0.75 +0.6 867,895 - EX31_RS21120 0.75 -0.1 867,915 + EX31_RS21120 0.77 -1.7 867,915 + EX31_RS21120 0.77 +0.2 868,025 + -0.4 868,093 + +0.6 868,093 + +1.0 868,093 + +0.3 868,093 + -0.8 868,093 + -0.1 868,093 + +1.2 868,093 + -0.3 868,093 + +1.1 868,093 + +0.0 868,094 - +0.3 868,094 - -1.2 868,094 - +0.1 868,094 - +1.0 868,094 - +0.8 868,202 + +0.5 868,202 + -0.1 868,215 + -0.4 868,215 + -0.3 868,216 - -0.4 868,216 - +0.2
Or see this region's nucleotide sequence