Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16945 and EX31_RS16950 are separated by 388 nucleotides
EX31_RS16945: EX31_RS16945 - MipA/OmpV family protein, at 18,857 to 19,657
_RS16945
EX31_RS16950: EX31_RS16950 - TetR/AcrR family transcriptional regulator, at 20,046 to 20,729
_RS16950
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.059 kb on - strand at 18.156 kb on + strand at 18.235 kb on + strand at 18.289 kb on + strand at 18.290 kb on - strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.306 kb on + strand at 18.307 kb on - strand at 18.316 kb on + strand at 18.316 kb on + strand at 18.316 kb on + strand at 18.335 kb on + strand at 18.335 kb on + strand at 18.398 kb on + strand at 18.399 kb on - strand at 18.400 kb on + strand at 18.400 kb on + strand at 18.401 kb on - strand at 18.405 kb on + strand at 18.405 kb on + strand at 18.406 kb on - strand at 18.406 kb on - strand at 18.419 kb on + strand at 18.419 kb on + strand at 18.419 kb on + strand at 18.419 kb on + strand at 18.419 kb on + strand at 18.419 kb on + strand at 18.420 kb on - strand at 18.420 kb on - strand at 18.420 kb on - strand at 18.420 kb on - strand at 18.450 kb on + strand at 18.450 kb on + strand at 18.450 kb on + strand at 18.451 kb on - strand at 18.451 kb on - strand at 18.452 kb on + strand at 18.452 kb on + strand at 18.452 kb on + strand at 18.452 kb on + strand at 18.452 kb on + strand at 18.453 kb on - strand at 18.453 kb on - strand at 18.486 kb on - strand at 18.486 kb on - strand at 18.487 kb on + strand at 18.492 kb on - strand at 18.519 kb on - strand at 18.553 kb on + strand at 18.639 kb on + strand at 18.639 kb on + strand at 18.660 kb on + strand at 18.664 kb on + strand at 18.715 kb on - strand at 18.719 kb on + strand at 18.719 kb on + strand at 18.741 kb on + strand at 18.741 kb on + strand at 18.741 kb on + strand at 18.741 kb on + strand at 18.741 kb on + strand at 18.741 kb on + strand at 18.741 kb on + strand at 18.741 kb on + strand at 18.741 kb on + strand at 18.742 kb on - strand at 18.743 kb on + strand at 18.743 kb on + strand at 18.743 kb on + strand at 18.743 kb on + strand at 18.743 kb on + strand at 18.743 kb on + strand at 18.744 kb on - strand at 18.744 kb on - strand at 18.757 kb on + strand at 18.757 kb on + strand at 18.757 kb on + strand at 18.757 kb on + strand at 18.757 kb on + strand at 18.758 kb on - strand at 18.758 kb on - strand at 18.791 kb on + strand at 18.791 kb on + strand at 18.791 kb on + strand at 18.792 kb on - strand at 18.851 kb on + strand at 18.851 kb on + strand at 18.851 kb on + strand at 18.851 kb on + strand at 18.851 kb on + strand at 18.851 kb on + strand at 18.852 kb on - strand at 18.852 kb on - strand at 18.877 kb on + strand at 18.877 kb on + strand at 18.877 kb on + strand at 18.877 kb on + strand at 18.877 kb on + strand at 18.878 kb on - strand at 18.878 kb on - strand at 18.880 kb on + strand at 18.881 kb on - strand at 18.904 kb on + strand at 18.905 kb on - strand at 18.955 kb on - strand, within EX31_RS16945 at 18.970 kb on + strand, within EX31_RS16945 at 18.970 kb on + strand, within EX31_RS16945 at 18.970 kb on + strand, within EX31_RS16945 at 18.970 kb on + strand, within EX31_RS16945 at 18.970 kb on + strand, within EX31_RS16945 at 18.970 kb on + strand, within EX31_RS16945 at 18.970 kb on + strand, within EX31_RS16945 at 18.971 kb on - strand, within EX31_RS16945 at 18.971 kb on - strand, within EX31_RS16945 at 18.971 kb on - strand, within EX31_RS16945 at 18.971 kb on - strand, within EX31_RS16945 at 18.971 kb on - strand, within EX31_RS16945 at 18.973 kb on + strand, within EX31_RS16945 at 18.973 kb on + strand, within EX31_RS16945 at 18.974 kb on - strand, within EX31_RS16945 at 18.974 kb on - strand, within EX31_RS16945 at 19.057 kb on - strand, within EX31_RS16945 at 19.057 kb on - strand, within EX31_RS16945 at 19.065 kb on + strand, within EX31_RS16945 at 19.066 kb on - strand, within EX31_RS16945 at 19.066 kb on - strand, within EX31_RS16945 at 19.096 kb on + strand, within EX31_RS16945 at 19.097 kb on - strand, within EX31_RS16945 at 19.099 kb on + strand, within EX31_RS16945 at 19.100 kb on - strand, within EX31_RS16945 at 19.100 kb on - strand, within EX31_RS16945 at 19.105 kb on + strand, within EX31_RS16945 at 19.106 kb on - strand, within EX31_RS16945 at 19.106 kb on - strand, within EX31_RS16945 at 19.106 kb on - strand, within EX31_RS16945 at 19.116 kb on + strand, within EX31_RS16945 at 19.116 kb on + strand, within EX31_RS16945 at 19.116 kb on + strand, within EX31_RS16945 at 19.117 kb on - strand, within EX31_RS16945 at 19.117 kb on - strand, within EX31_RS16945 at 19.147 kb on + strand, within EX31_RS16945 at 19.147 kb on + strand, within EX31_RS16945 at 19.148 kb on - strand, within EX31_RS16945 at 19.169 kb on + strand, within EX31_RS16945 at 19.169 kb on + strand, within EX31_RS16945 at 19.170 kb on - strand, within EX31_RS16945 at 19.185 kb on - strand, within EX31_RS16945 at 19.239 kb on + strand, within EX31_RS16945 at 19.239 kb on + strand, within EX31_RS16945 at 19.317 kb on - strand, within EX31_RS16945 at 19.318 kb on + strand, within EX31_RS16945 at 19.318 kb on + strand, within EX31_RS16945 at 19.318 kb on + strand, within EX31_RS16945 at 19.319 kb on - strand, within EX31_RS16945 at 19.319 kb on - strand, within EX31_RS16945 at 19.319 kb on - strand, within EX31_RS16945 at 19.321 kb on + strand, within EX31_RS16945 at 19.322 kb on - strand, within EX31_RS16945 at 19.427 kb on + strand, within EX31_RS16945 at 19.427 kb on + strand, within EX31_RS16945 at 19.428 kb on - strand, within EX31_RS16945 at 19.428 kb on - strand, within EX31_RS16945 at 19.430 kb on + strand, within EX31_RS16945 at 19.430 kb on + strand, within EX31_RS16945 at 19.430 kb on + strand, within EX31_RS16945 at 19.433 kb on + strand, within EX31_RS16945 at 19.433 kb on + strand, within EX31_RS16945 at 19.475 kb on + strand, within EX31_RS16945 at 19.489 kb on + strand, within EX31_RS16945 at 19.585 kb on + strand at 19.586 kb on - strand at 19.588 kb on + strand at 19.589 kb on - strand at 19.594 kb on + strand at 19.641 kb on - strand at 19.643 kb on - strand at 19.819 kb on + strand at 19.826 kb on - strand at 19.839 kb on - strand at 20.001 kb on + strand at 20.004 kb on + strand at 20.017 kb on - strand at 20.017 kb on - strand at 20.018 kb on + strand at 20.018 kb on + strand at 20.060 kb on + strand at 20.060 kb on + strand at 20.061 kb on - strand at 20.061 kb on - strand at 20.069 kb on - strand at 20.076 kb on + strand at 20.144 kb on + strand, within EX31_RS16950 at 20.144 kb on + strand, within EX31_RS16950 at 20.146 kb on + strand, within EX31_RS16950 at 20.146 kb on + strand, within EX31_RS16950 at 20.148 kb on + strand, within EX31_RS16950 at 20.189 kb on - strand, within EX31_RS16950 at 20.223 kb on + strand, within EX31_RS16950 at 20.224 kb on - strand, within EX31_RS16950 at 20.224 kb on - strand, within EX31_RS16950 at 20.228 kb on - strand, within EX31_RS16950 at 20.254 kb on + strand, within EX31_RS16950 at 20.254 kb on + strand, within EX31_RS16950 at 20.254 kb on + strand, within EX31_RS16950 at 20.254 kb on + strand, within EX31_RS16950 at 20.255 kb on - strand, within EX31_RS16950 at 20.255 kb on - strand, within EX31_RS16950 at 20.255 kb on - strand, within EX31_RS16950 at 20.256 kb on + strand, within EX31_RS16950 at 20.257 kb on - strand, within EX31_RS16950 at 20.263 kb on - strand, within EX31_RS16950 at 20.263 kb on - strand, within EX31_RS16950 at 20.263 kb on - strand, within EX31_RS16950 at 20.310 kb on + strand, within EX31_RS16950 at 20.311 kb on - strand, within EX31_RS16950 at 20.333 kb on + strand, within EX31_RS16950 at 20.334 kb on - strand, within EX31_RS16950 at 20.342 kb on + strand, within EX31_RS16950 at 20.342 kb on + strand, within EX31_RS16950 at 20.342 kb on + strand, within EX31_RS16950 at 20.342 kb on + strand, within EX31_RS16950 at 20.342 kb on + strand, within EX31_RS16950 at 20.342 kb on + strand, within EX31_RS16950 at 20.343 kb on - strand, within EX31_RS16950 at 20.343 kb on - strand, within EX31_RS16950 at 20.343 kb on - strand, within EX31_RS16950 at 20.343 kb on - strand, within EX31_RS16950 at 20.343 kb on - strand, within EX31_RS16950 at 20.343 kb on - strand, within EX31_RS16950 at 20.343 kb on - strand, within EX31_RS16950 at 20.379 kb on - strand, within EX31_RS16950 at 20.389 kb on + strand, within EX31_RS16950 at 20.389 kb on + strand, within EX31_RS16950 at 20.389 kb on + strand, within EX31_RS16950 at 20.390 kb on - strand, within EX31_RS16950 at 20.390 kb on - strand, within EX31_RS16950 at 20.390 kb on - strand, within EX31_RS16950 at 20.454 kb on + strand, within EX31_RS16950 at 20.474 kb on + strand, within EX31_RS16950 at 20.474 kb on + strand, within EX31_RS16950 at 20.475 kb on - strand, within EX31_RS16950 at 20.498 kb on + strand, within EX31_RS16950 at 20.499 kb on - strand, within EX31_RS16950 at 20.503 kb on + strand, within EX31_RS16950 at 20.504 kb on - strand, within EX31_RS16950 at 20.550 kb on + strand, within EX31_RS16950 at 20.601 kb on - strand, within EX31_RS16950 at 20.628 kb on + strand, within EX31_RS16950 at 20.628 kb on + strand, within EX31_RS16950 at 20.628 kb on + strand, within EX31_RS16950 at 20.628 kb on + strand, within EX31_RS16950
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 18,059 - -1.4 18,156 + -1.0 18,235 + -0.1 18,289 + -0.4 18,290 - +0.6 18,302 + -0.4 18,302 + -1.8 18,302 + -0.0 18,302 + +0.6 18,302 + +0.0 18,306 + +0.6 18,307 - +0.2 18,316 + -0.1 18,316 + -0.4 18,316 + -1.0 18,335 + -0.9 18,335 + -1.1 18,398 + -0.4 18,399 - +0.2 18,400 + -0.7 18,400 + +0.6 18,401 - -2.4 18,405 + -0.8 18,405 + -1.6 18,406 - -0.1 18,406 - +0.0 18,419 + -0.5 18,419 + -1.0 18,419 + +0.9 18,419 + -0.8 18,419 + -0.5 18,419 + -0.2 18,420 - -0.3 18,420 - -0.5 18,420 - -0.5 18,420 - -2.8 18,450 + -1.1 18,450 + -0.1 18,450 + +0.1 18,451 - -0.5 18,451 - -0.6 18,452 + +0.9 18,452 + +0.7 18,452 + -0.6 18,452 + -0.8 18,452 + -0.4 18,453 - -0.2 18,453 - -0.5 18,486 - -0.1 18,486 - -1.7 18,487 + -0.1 18,492 - -0.6 18,519 - +0.3 18,553 + +0.5 18,639 + -0.3 18,639 + -0.9 18,660 + -0.6 18,664 + -0.1 18,715 - -0.2 18,719 + -0.2 18,719 + -0.6 18,741 + +0.3 18,741 + -1.5 18,741 + -0.2 18,741 + +0.2 18,741 + -1.0 18,741 + -0.2 18,741 + +0.8 18,741 + -0.7 18,741 + -0.7 18,742 - -0.4 18,743 + +0.6 18,743 + -0.7 18,743 + -0.9 18,743 + -1.4 18,743 + -0.1 18,743 + +0.2 18,744 - -0.2 18,744 - +0.2 18,757 + +0.5 18,757 + -2.1 18,757 + -0.1 18,757 + -0.1 18,757 + -0.4 18,758 - +0.5 18,758 - -0.2 18,791 + +0.1 18,791 + +0.3 18,791 + -0.1 18,792 - +0.4 18,851 + +0.0 18,851 + -0.2 18,851 + -0.8 18,851 + +0.1 18,851 + -1.0 18,851 + +0.5 18,852 - +0.3 18,852 - +1.1 18,877 + +0.6 18,877 + -0.2 18,877 + +0.9 18,877 + +1.0 18,877 + +0.7 18,878 - -0.7 18,878 - -0.2 18,880 + +0.5 18,881 - -1.0 18,904 + -0.4 18,905 - -0.6 18,955 - EX31_RS16945 0.12 +0.5 18,970 + EX31_RS16945 0.14 +0.3 18,970 + EX31_RS16945 0.14 -1.1 18,970 + EX31_RS16945 0.14 -0.4 18,970 + EX31_RS16945 0.14 -0.5 18,970 + EX31_RS16945 0.14 +0.8 18,970 + EX31_RS16945 0.14 -1.5 18,970 + EX31_RS16945 0.14 +0.0 18,971 - EX31_RS16945 0.14 +0.1 18,971 - EX31_RS16945 0.14 -0.5 18,971 - EX31_RS16945 0.14 -0.6 18,971 - EX31_RS16945 0.14 +1.1 18,971 - EX31_RS16945 0.14 -0.2 18,973 + EX31_RS16945 0.14 -0.8 18,973 + EX31_RS16945 0.14 +0.4 18,974 - EX31_RS16945 0.15 -0.2 18,974 - EX31_RS16945 0.15 -0.7 19,057 - EX31_RS16945 0.25 -0.1 19,057 - EX31_RS16945 0.25 -0.7 19,065 + EX31_RS16945 0.26 +0.1 19,066 - EX31_RS16945 0.26 -1.1 19,066 - EX31_RS16945 0.26 +0.0 19,096 + EX31_RS16945 0.30 -0.9 19,097 - EX31_RS16945 0.30 -0.2 19,099 + EX31_RS16945 0.30 +0.8 19,100 - EX31_RS16945 0.30 +0.4 19,100 - EX31_RS16945 0.30 -0.8 19,105 + EX31_RS16945 0.31 -0.7 19,106 - EX31_RS16945 0.31 -1.7 19,106 - EX31_RS16945 0.31 +2.2 19,106 - EX31_RS16945 0.31 -2.6 19,116 + EX31_RS16945 0.32 -0.1 19,116 + EX31_RS16945 0.32 -0.6 19,116 + EX31_RS16945 0.32 +0.3 19,117 - EX31_RS16945 0.32 +0.1 19,117 - EX31_RS16945 0.32 -0.9 19,147 + EX31_RS16945 0.36 -0.4 19,147 + EX31_RS16945 0.36 -0.4 19,148 - EX31_RS16945 0.36 +0.6 19,169 + EX31_RS16945 0.39 -0.2 19,169 + EX31_RS16945 0.39 -1.1 19,170 - EX31_RS16945 0.39 -0.7 19,185 - EX31_RS16945 0.41 -3.4 19,239 + EX31_RS16945 0.48 +0.3 19,239 + EX31_RS16945 0.48 +0.2 19,317 - EX31_RS16945 0.57 +1.2 19,318 + EX31_RS16945 0.58 -0.1 19,318 + EX31_RS16945 0.58 -0.2 19,318 + EX31_RS16945 0.58 -1.1 19,319 - EX31_RS16945 0.58 -1.9 19,319 - EX31_RS16945 0.58 -0.5 19,319 - EX31_RS16945 0.58 -1.1 19,321 + EX31_RS16945 0.58 +0.2 19,322 - EX31_RS16945 0.58 +0.2 19,427 + EX31_RS16945 0.71 -0.5 19,427 + EX31_RS16945 0.71 -1.0 19,428 - EX31_RS16945 0.71 -0.4 19,428 - EX31_RS16945 0.71 -0.0 19,430 + EX31_RS16945 0.72 +0.0 19,430 + EX31_RS16945 0.72 +1.3 19,430 + EX31_RS16945 0.72 -0.1 19,433 + EX31_RS16945 0.72 -0.5 19,433 + EX31_RS16945 0.72 -0.4 19,475 + EX31_RS16945 0.77 -0.5 19,489 + EX31_RS16945 0.79 +0.2 19,585 + -1.1 19,586 - -1.8 19,588 + +0.1 19,589 - -0.1 19,594 + -0.2 19,641 - +1.0 19,643 - -0.9 19,819 + +0.3 19,826 - -0.2 19,839 - +0.4 20,001 + -0.7 20,004 + +0.1 20,017 - -0.8 20,017 - -0.4 20,018 + -0.8 20,018 + -0.4 20,060 + +0.9 20,060 + -2.2 20,061 - -0.5 20,061 - -0.4 20,069 - -0.0 20,076 + -0.1 20,144 + EX31_RS16950 0.14 -0.7 20,144 + EX31_RS16950 0.14 -0.5 20,146 + EX31_RS16950 0.15 +0.7 20,146 + EX31_RS16950 0.15 -0.0 20,148 + EX31_RS16950 0.15 +0.1 20,189 - EX31_RS16950 0.21 -0.8 20,223 + EX31_RS16950 0.26 -0.1 20,224 - EX31_RS16950 0.26 +0.0 20,224 - EX31_RS16950 0.26 -0.5 20,228 - EX31_RS16950 0.27 -0.8 20,254 + EX31_RS16950 0.30 +0.7 20,254 + EX31_RS16950 0.30 -0.3 20,254 + EX31_RS16950 0.30 +0.1 20,254 + EX31_RS16950 0.30 +0.2 20,255 - EX31_RS16950 0.31 +0.2 20,255 - EX31_RS16950 0.31 +0.8 20,255 - EX31_RS16950 0.31 +0.5 20,256 + EX31_RS16950 0.31 -0.2 20,257 - EX31_RS16950 0.31 +1.1 20,263 - EX31_RS16950 0.32 +0.6 20,263 - EX31_RS16950 0.32 -0.0 20,263 - EX31_RS16950 0.32 -0.7 20,310 + EX31_RS16950 0.39 +0.0 20,311 - EX31_RS16950 0.39 -0.0 20,333 + EX31_RS16950 0.42 +0.4 20,334 - EX31_RS16950 0.42 +2.0 20,342 + EX31_RS16950 0.43 +0.8 20,342 + EX31_RS16950 0.43 +0.8 20,342 + EX31_RS16950 0.43 +0.2 20,342 + EX31_RS16950 0.43 -0.1 20,342 + EX31_RS16950 0.43 -0.5 20,342 + EX31_RS16950 0.43 -0.3 20,343 - EX31_RS16950 0.43 -0.5 20,343 - EX31_RS16950 0.43 +0.3 20,343 - EX31_RS16950 0.43 -0.0 20,343 - EX31_RS16950 0.43 -0.7 20,343 - EX31_RS16950 0.43 -0.3 20,343 - EX31_RS16950 0.43 -0.4 20,343 - EX31_RS16950 0.43 +0.7 20,379 - EX31_RS16950 0.49 +0.4 20,389 + EX31_RS16950 0.50 +0.7 20,389 + EX31_RS16950 0.50 -0.1 20,389 + EX31_RS16950 0.50 -1.0 20,390 - EX31_RS16950 0.50 -1.1 20,390 - EX31_RS16950 0.50 +0.5 20,390 - EX31_RS16950 0.50 -2.7 20,454 + EX31_RS16950 0.60 +0.3 20,474 + EX31_RS16950 0.63 -0.2 20,474 + EX31_RS16950 0.63 -0.0 20,475 - EX31_RS16950 0.63 -1.2 20,498 + EX31_RS16950 0.66 +1.0 20,499 - EX31_RS16950 0.66 -0.2 20,503 + EX31_RS16950 0.67 +0.8 20,504 - EX31_RS16950 0.67 -0.2 20,550 + EX31_RS16950 0.74 -0.1 20,601 - EX31_RS16950 0.81 -0.6 20,628 + EX31_RS16950 0.85 -1.2 20,628 + EX31_RS16950 0.85 -0.5 20,628 + EX31_RS16950 0.85 +0.1 20,628 + EX31_RS16950 0.85 +0.4
Or see this region's nucleotide sequence