Strain Fitness in Rahnella sp. WP5 around EX31_RS15170

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15160 and EX31_RS15165 overlap by 4 nucleotidesEX31_RS15165 and EX31_RS15170 overlap by 1 nucleotidesEX31_RS15170 and EX31_RS15175 are separated by 96 nucleotides EX31_RS15160: EX31_RS15160 - DUF484 domain-containing protein, at 49,144 to 49,848 _RS15160 EX31_RS15165: EX31_RS15165 - tyrosine recombinase XerC, at 49,845 to 50,756 _RS15165 EX31_RS15170: EX31_RS15170 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 50,756 to 51,472 _RS15170 EX31_RS15175: EX31_RS15175 - DNA helicase II, at 51,569 to 53,731 _RS15175 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.787 kb on + strandat 49.844 kb on + strandat 49.897 kb on - strandat 49.929 kb on - strandat 49.941 kb on + strand, within EX31_RS15165at 49.941 kb on + strand, within EX31_RS15165at 49.941 kb on + strand, within EX31_RS15165at 49.942 kb on - strand, within EX31_RS15165at 49.942 kb on - strand, within EX31_RS15165at 49.942 kb on - strand, within EX31_RS15165at 49.942 kb on - strand, within EX31_RS15165at 49.954 kb on + strand, within EX31_RS15165at 49.955 kb on - strand, within EX31_RS15165at 49.988 kb on + strand, within EX31_RS15165at 50.046 kb on - strand, within EX31_RS15165at 50.217 kb on - strand, within EX31_RS15165at 50.283 kb on + strand, within EX31_RS15165at 50.283 kb on + strand, within EX31_RS15165at 50.284 kb on - strand, within EX31_RS15165at 50.284 kb on - strand, within EX31_RS15165at 50.284 kb on - strand, within EX31_RS15165at 50.333 kb on + strand, within EX31_RS15165at 50.333 kb on + strand, within EX31_RS15165at 50.334 kb on - strand, within EX31_RS15165at 50.499 kb on - strand, within EX31_RS15165at 50.565 kb on - strand, within EX31_RS15165at 50.679 kb on + strandat 50.679 kb on + strandat 50.679 kb on + strandat 50.680 kb on - strandat 50.766 kb on - strandat 50.805 kb on + strandat 50.819 kb on + strandat 50.819 kb on + strandat 50.820 kb on - strandat 50.820 kb on - strandat 50.828 kb on + strand, within EX31_RS15170at 50.828 kb on + strand, within EX31_RS15170at 50.829 kb on - strand, within EX31_RS15170at 50.829 kb on - strand, within EX31_RS15170at 50.829 kb on - strand, within EX31_RS15170at 50.961 kb on - strand, within EX31_RS15170at 51.092 kb on + strand, within EX31_RS15170at 51.092 kb on + strand, within EX31_RS15170at 51.092 kb on + strand, within EX31_RS15170at 51.093 kb on - strand, within EX31_RS15170at 51.093 kb on - strand, within EX31_RS15170at 51.093 kb on - strand, within EX31_RS15170at 51.093 kb on - strand, within EX31_RS15170at 51.093 kb on - strand, within EX31_RS15170at 51.093 kb on - strand, within EX31_RS15170at 51.154 kb on + strand, within EX31_RS15170at 51.154 kb on + strand, within EX31_RS15170at 51.154 kb on + strand, within EX31_RS15170at 51.155 kb on - strand, within EX31_RS15170at 51.200 kb on + strand, within EX31_RS15170at 51.200 kb on + strand, within EX31_RS15170at 51.200 kb on + strand, within EX31_RS15170at 51.201 kb on - strand, within EX31_RS15170at 51.211 kb on + strand, within EX31_RS15170at 51.211 kb on + strand, within EX31_RS15170at 51.211 kb on + strand, within EX31_RS15170at 51.211 kb on + strand, within EX31_RS15170at 51.211 kb on + strand, within EX31_RS15170at 51.211 kb on + strand, within EX31_RS15170at 51.211 kb on + strand, within EX31_RS15170at 51.211 kb on + strand, within EX31_RS15170at 51.211 kb on + strand, within EX31_RS15170at 51.212 kb on - strand, within EX31_RS15170at 51.212 kb on - strand, within EX31_RS15170at 51.248 kb on + strand, within EX31_RS15170at 51.260 kb on + strand, within EX31_RS15170at 51.260 kb on + strand, within EX31_RS15170at 51.260 kb on + strand, within EX31_RS15170at 51.260 kb on + strand, within EX31_RS15170at 51.260 kb on + strand, within EX31_RS15170at 51.261 kb on - strand, within EX31_RS15170at 51.261 kb on - strand, within EX31_RS15170at 51.261 kb on - strand, within EX31_RS15170at 51.261 kb on - strand, within EX31_RS15170at 51.261 kb on - strand, within EX31_RS15170at 51.263 kb on - strand, within EX31_RS15170at 51.263 kb on - strand, within EX31_RS15170at 51.377 kb on - strand, within EX31_RS15170at 51.431 kb on - strandat 51.468 kb on + strandat 51.468 kb on + strandat 51.468 kb on + strandat 51.468 kb on + strandat 51.468 kb on + strandat 51.468 kb on + strandat 51.468 kb on + strandat 51.468 kb on + strandat 51.468 kb on + strandat 51.468 kb on + strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.469 kb on - strandat 51.471 kb on - strandat 51.481 kb on + strandat 51.495 kb on + strandat 51.568 kb on + strandat 51.569 kb on - strandat 51.569 kb on - strandat 51.732 kb on - strandat 51.736 kb on + strandat 51.736 kb on + strandat 51.736 kb on + strandat 51.736 kb on + strandat 51.736 kb on + strandat 51.736 kb on + strandat 51.737 kb on - strandat 51.737 kb on - strandat 51.737 kb on - strandat 51.737 kb on - strandat 51.737 kb on - strandat 51.739 kb on + strandat 51.739 kb on + strandat 51.740 kb on - strandat 51.787 kb on + strand, within EX31_RS15175at 51.876 kb on + strand, within EX31_RS15175at 51.876 kb on + strand, within EX31_RS15175at 51.877 kb on - strand, within EX31_RS15175at 51.877 kb on - strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.927 kb on + strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.928 kb on - strand, within EX31_RS15175at 51.970 kb on + strand, within EX31_RS15175at 51.970 kb on + strand, within EX31_RS15175at 51.971 kb on - strand, within EX31_RS15175at 52.001 kb on + strand, within EX31_RS15175at 52.001 kb on + strand, within EX31_RS15175at 52.001 kb on + strand, within EX31_RS15175at 52.001 kb on + strand, within EX31_RS15175at 52.001 kb on + strand, within EX31_RS15175at 52.001 kb on + strand, within EX31_RS15175at 52.001 kb on + strand, within EX31_RS15175at 52.001 kb on + strand, within EX31_RS15175at 52.001 kb on + strand, within EX31_RS15175at 52.002 kb on - strand, within EX31_RS15175at 52.002 kb on - strand, within EX31_RS15175at 52.002 kb on - strand, within EX31_RS15175at 52.002 kb on - strand, within EX31_RS15175at 52.002 kb on - strand, within EX31_RS15175at 52.002 kb on - strand, within EX31_RS15175at 52.002 kb on - strand, within EX31_RS15175at 52.052 kb on + strand, within EX31_RS15175at 52.052 kb on + strand, within EX31_RS15175at 52.053 kb on - strand, within EX31_RS15175at 52.053 kb on - strand, within EX31_RS15175at 52.053 kb on - strand, within EX31_RS15175at 52.097 kb on + strand, within EX31_RS15175at 52.098 kb on - strand, within EX31_RS15175at 52.183 kb on + strand, within EX31_RS15175at 52.183 kb on + strand, within EX31_RS15175at 52.183 kb on + strand, within EX31_RS15175at 52.183 kb on + strand, within EX31_RS15175at 52.184 kb on - strand, within EX31_RS15175at 52.184 kb on - strand, within EX31_RS15175at 52.184 kb on - strand, within EX31_RS15175at 52.184 kb on - strand, within EX31_RS15175at 52.210 kb on + strand, within EX31_RS15175at 52.211 kb on - strand, within EX31_RS15175at 52.291 kb on + strand, within EX31_RS15175at 52.291 kb on + strand, within EX31_RS15175at 52.291 kb on + strand, within EX31_RS15175at 52.291 kb on + strand, within EX31_RS15175at 52.291 kb on + strand, within EX31_RS15175at 52.291 kb on + strand, within EX31_RS15175at 52.291 kb on + strand, within EX31_RS15175at 52.292 kb on - strand, within EX31_RS15175at 52.292 kb on - strand, within EX31_RS15175at 52.292 kb on - strand, within EX31_RS15175at 52.415 kb on + strand, within EX31_RS15175at 52.415 kb on + strand, within EX31_RS15175at 52.416 kb on - strand, within EX31_RS15175

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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49,787 + -0.5
49,844 + -0.2
49,897 - -0.5
49,929 - +0.3
49,941 + EX31_RS15165 0.11 -0.5
49,941 + EX31_RS15165 0.11 -1.8
49,941 + EX31_RS15165 0.11 -1.1
49,942 - EX31_RS15165 0.11 -2.2
49,942 - EX31_RS15165 0.11 -2.4
49,942 - EX31_RS15165 0.11 -1.1
49,942 - EX31_RS15165 0.11 -2.2
49,954 + EX31_RS15165 0.12 -1.9
49,955 - EX31_RS15165 0.12 -1.8
49,988 + EX31_RS15165 0.16 +0.1
50,046 - EX31_RS15165 0.22 -0.6
50,217 - EX31_RS15165 0.41 -0.7
50,283 + EX31_RS15165 0.48 -1.0
50,283 + EX31_RS15165 0.48 -0.4
50,284 - EX31_RS15165 0.48 -1.1
50,284 - EX31_RS15165 0.48 -1.3
50,284 - EX31_RS15165 0.48 -1.6
50,333 + EX31_RS15165 0.54 -1.0
50,333 + EX31_RS15165 0.54 -0.3
50,334 - EX31_RS15165 0.54 -2.6
50,499 - EX31_RS15165 0.72 -0.6
50,565 - EX31_RS15165 0.79 -0.8
50,679 + -1.4
50,679 + -1.2
50,679 + -2.6
50,680 - -0.4
50,766 - -1.0
50,805 + -0.0
50,819 + +0.1
50,819 + +0.3
50,820 - -0.9
50,820 - +0.5
50,828 + EX31_RS15170 0.10 +0.0
50,828 + EX31_RS15170 0.10 -0.2
50,829 - EX31_RS15170 0.10 -0.4
50,829 - EX31_RS15170 0.10 +1.1
50,829 - EX31_RS15170 0.10 +0.2
50,961 - EX31_RS15170 0.29 -1.1
51,092 + EX31_RS15170 0.47 -0.6
51,092 + EX31_RS15170 0.47 -0.4
51,092 + EX31_RS15170 0.47 +0.4
51,093 - EX31_RS15170 0.47 -0.2
51,093 - EX31_RS15170 0.47 -0.8
51,093 - EX31_RS15170 0.47 +0.4
51,093 - EX31_RS15170 0.47 +0.7
51,093 - EX31_RS15170 0.47 +0.7
51,093 - EX31_RS15170 0.47 +1.0
51,154 + EX31_RS15170 0.56 -0.6
51,154 + EX31_RS15170 0.56 -0.2
51,154 + EX31_RS15170 0.56 -0.4
51,155 - EX31_RS15170 0.56 +0.1
51,200 + EX31_RS15170 0.62 +0.3
51,200 + EX31_RS15170 0.62 +0.4
51,200 + EX31_RS15170 0.62 -0.7
51,201 - EX31_RS15170 0.62 +0.0
51,211 + EX31_RS15170 0.63 +1.2
51,211 + EX31_RS15170 0.63 -0.0
51,211 + EX31_RS15170 0.63 +0.2
51,211 + EX31_RS15170 0.63 -0.6
51,211 + EX31_RS15170 0.63 -0.1
51,211 + EX31_RS15170 0.63 +0.4
51,211 + EX31_RS15170 0.63 -1.4
51,211 + EX31_RS15170 0.63 +0.6
51,211 + EX31_RS15170 0.63 +0.7
51,212 - EX31_RS15170 0.64 +0.0
51,212 - EX31_RS15170 0.64 -0.3
51,248 + EX31_RS15170 0.69 +0.1
51,260 + EX31_RS15170 0.70 +0.3
51,260 + EX31_RS15170 0.70 -0.3
51,260 + EX31_RS15170 0.70 -0.7
51,260 + EX31_RS15170 0.70 -0.4
51,260 + EX31_RS15170 0.70 +0.9
51,261 - EX31_RS15170 0.70 -0.3
51,261 - EX31_RS15170 0.70 +0.1
51,261 - EX31_RS15170 0.70 +0.2
51,261 - EX31_RS15170 0.70 -1.5
51,261 - EX31_RS15170 0.70 +0.4
51,263 - EX31_RS15170 0.71 +0.2
51,263 - EX31_RS15170 0.71 +0.2
51,377 - EX31_RS15170 0.87 -0.2
51,431 - +1.0
51,468 + +0.3
51,468 + -0.4
51,468 + -0.5
51,468 + +0.3
51,468 + +0.2
51,468 + -0.2
51,468 + -0.6
51,468 + -0.0
51,468 + -0.3
51,468 + +0.1
51,469 - -0.4
51,469 - +0.2
51,469 - +0.7
51,469 - -1.5
51,469 - +0.1
51,469 - -0.4
51,469 - -0.7
51,469 - -0.1
51,469 - +0.3
51,469 - +1.4
51,469 - +0.2
51,471 - -0.6
51,481 + +1.1
51,495 + +0.4
51,568 + +0.3
51,569 - +0.3
51,569 - +2.2
51,732 - -0.0
51,736 + -0.8
51,736 + +0.6
51,736 + -0.7
51,736 + +0.0
51,736 + +0.2
51,736 + -0.6
51,737 - -0.2
51,737 - -0.6
51,737 - -0.3
51,737 - -0.7
51,737 - -1.0
51,739 + -0.2
51,739 + +1.6
51,740 - +0.4
51,787 + EX31_RS15175 0.10 +0.0
51,876 + EX31_RS15175 0.14 +0.3
51,876 + EX31_RS15175 0.14 -0.9
51,877 - EX31_RS15175 0.14 -0.5
51,877 - EX31_RS15175 0.14 +0.6
51,927 + EX31_RS15175 0.17 -0.2
51,927 + EX31_RS15175 0.17 +0.1
51,927 + EX31_RS15175 0.17 +0.1
51,927 + EX31_RS15175 0.17 -0.9
51,927 + EX31_RS15175 0.17 -0.3
51,927 + EX31_RS15175 0.17 -0.2
51,927 + EX31_RS15175 0.17 +0.3
51,927 + EX31_RS15175 0.17 -0.5
51,927 + EX31_RS15175 0.17 -0.9
51,927 + EX31_RS15175 0.17 +0.2
51,928 - EX31_RS15175 0.17 -0.5
51,928 - EX31_RS15175 0.17 +0.5
51,928 - EX31_RS15175 0.17 +0.0
51,928 - EX31_RS15175 0.17 -1.2
51,928 - EX31_RS15175 0.17 -1.2
51,928 - EX31_RS15175 0.17 +0.5
51,928 - EX31_RS15175 0.17 -0.3
51,928 - EX31_RS15175 0.17 +0.0
51,928 - EX31_RS15175 0.17 +0.3
51,928 - EX31_RS15175 0.17 +0.5
51,970 + EX31_RS15175 0.19 +0.3
51,970 + EX31_RS15175 0.19 -0.5
51,971 - EX31_RS15175 0.19 -1.9
52,001 + EX31_RS15175 0.20 -0.4
52,001 + EX31_RS15175 0.20 -1.1
52,001 + EX31_RS15175 0.20 +0.0
52,001 + EX31_RS15175 0.20 -0.5
52,001 + EX31_RS15175 0.20 +0.3
52,001 + EX31_RS15175 0.20 +0.3
52,001 + EX31_RS15175 0.20 +0.3
52,001 + EX31_RS15175 0.20 +0.8
52,001 + EX31_RS15175 0.20 -0.7
52,002 - EX31_RS15175 0.20 +0.1
52,002 - EX31_RS15175 0.20 -0.1
52,002 - EX31_RS15175 0.20 -0.4
52,002 - EX31_RS15175 0.20 -0.1
52,002 - EX31_RS15175 0.20 +0.1
52,002 - EX31_RS15175 0.20 +0.7
52,002 - EX31_RS15175 0.20 -0.3
52,052 + EX31_RS15175 0.22 -0.0
52,052 + EX31_RS15175 0.22 -0.1
52,053 - EX31_RS15175 0.22 +0.6
52,053 - EX31_RS15175 0.22 +0.5
52,053 - EX31_RS15175 0.22 -0.4
52,097 + EX31_RS15175 0.24 -0.1
52,098 - EX31_RS15175 0.24 -0.2
52,183 + EX31_RS15175 0.28 +0.5
52,183 + EX31_RS15175 0.28 -2.0
52,183 + EX31_RS15175 0.28 +0.6
52,183 + EX31_RS15175 0.28 -0.2
52,184 - EX31_RS15175 0.28 +0.8
52,184 - EX31_RS15175 0.28 -0.0
52,184 - EX31_RS15175 0.28 +0.7
52,184 - EX31_RS15175 0.28 +0.1
52,210 + EX31_RS15175 0.30 -0.8
52,211 - EX31_RS15175 0.30 +0.7
52,291 + EX31_RS15175 0.33 +2.2
52,291 + EX31_RS15175 0.33 -0.0
52,291 + EX31_RS15175 0.33 -0.3
52,291 + EX31_RS15175 0.33 +0.4
52,291 + EX31_RS15175 0.33 -0.3
52,291 + EX31_RS15175 0.33 -0.3
52,291 + EX31_RS15175 0.33 -1.0
52,292 - EX31_RS15175 0.33 -0.7
52,292 - EX31_RS15175 0.33 +0.3
52,292 - EX31_RS15175 0.33 -0.8
52,415 + EX31_RS15175 0.39 -0.3
52,415 + EX31_RS15175 0.39 -0.4
52,416 - EX31_RS15175 0.39 +0.1

Or see this region's nucleotide sequence