Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11210 and EX31_RS11215 are separated by 105 nucleotides EX31_RS11215 and EX31_RS11220 are separated by 170 nucleotides
EX31_RS11210: EX31_RS11210 - oxidoreductase, at 174,497 to 175,474
_RS11210
EX31_RS11215: EX31_RS11215 - TetR family transcriptional regulator, at 175,580 to 176,248
_RS11215
EX31_RS11220: EX31_RS11220 - LLM class flavin-dependent oxidoreductase, at 176,419 to 177,756
_RS11220
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 174.622 kb on + strand, within EX31_RS11210 at 174.911 kb on - strand, within EX31_RS11210 at 174.918 kb on + strand, within EX31_RS11210 at 174.919 kb on - strand, within EX31_RS11210 at 174.928 kb on + strand, within EX31_RS11210 at 174.928 kb on + strand, within EX31_RS11210 at 174.928 kb on + strand, within EX31_RS11210 at 174.929 kb on - strand, within EX31_RS11210 at 174.929 kb on - strand, within EX31_RS11210 at 174.959 kb on - strand, within EX31_RS11210 at 174.959 kb on - strand, within EX31_RS11210 at 174.970 kb on + strand, within EX31_RS11210 at 174.970 kb on + strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.992 kb on - strand, within EX31_RS11210 at 175.354 kb on - strand, within EX31_RS11210 at 175.385 kb on + strand at 175.386 kb on - strand at 175.386 kb on - strand at 175.386 kb on - strand at 175.521 kb on + strand at 175.537 kb on + strand at 175.538 kb on - strand at 175.538 kb on - strand at 175.566 kb on + strand at 175.567 kb on - strand at 175.606 kb on + strand at 175.607 kb on - strand at 175.851 kb on - strand, within EX31_RS11215 at 175.996 kb on - strand, within EX31_RS11215 at 176.029 kb on + strand, within EX31_RS11215 at 176.029 kb on + strand, within EX31_RS11215 at 176.030 kb on - strand, within EX31_RS11215 at 176.030 kb on - strand, within EX31_RS11215 at 176.040 kb on + strand, within EX31_RS11215 at 176.041 kb on - strand, within EX31_RS11215 at 176.046 kb on + strand, within EX31_RS11215 at 176.159 kb on - strand, within EX31_RS11215 at 176.159 kb on - strand, within EX31_RS11215 at 176.344 kb on + strand at 176.410 kb on - strand at 176.417 kb on - strand at 176.460 kb on + strand at 176.461 kb on - strand at 176.462 kb on + strand at 176.484 kb on + strand at 176.607 kb on + strand, within EX31_RS11220 at 176.608 kb on - strand, within EX31_RS11220 at 176.789 kb on - strand, within EX31_RS11220 at 176.910 kb on - strand, within EX31_RS11220 at 176.968 kb on - strand, within EX31_RS11220 at 177.021 kb on - strand, within EX31_RS11220 at 177.075 kb on + strand, within EX31_RS11220 at 177.198 kb on + strand, within EX31_RS11220 at 177.198 kb on + strand, within EX31_RS11220
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 174,622 + EX31_RS11210 0.13 +0.2 174,911 - EX31_RS11210 0.42 -0.5 174,918 + EX31_RS11210 0.43 +0.1 174,919 - EX31_RS11210 0.43 +1.1 174,928 + EX31_RS11210 0.44 +0.0 174,928 + EX31_RS11210 0.44 -0.3 174,928 + EX31_RS11210 0.44 -0.4 174,929 - EX31_RS11210 0.44 -0.5 174,929 - EX31_RS11210 0.44 +0.8 174,959 - EX31_RS11210 0.47 +0.6 174,959 - EX31_RS11210 0.47 +1.0 174,970 + EX31_RS11210 0.48 -0.9 174,970 + EX31_RS11210 0.48 -2.0 174,971 - EX31_RS11210 0.48 +1.2 174,971 - EX31_RS11210 0.48 +0.6 174,971 - EX31_RS11210 0.48 +0.5 174,971 - EX31_RS11210 0.48 +0.8 174,971 - EX31_RS11210 0.48 +0.6 174,971 - EX31_RS11210 0.48 -0.3 174,971 - EX31_RS11210 0.48 -0.7 174,992 - EX31_RS11210 0.51 -0.5 175,354 - EX31_RS11210 0.88 +0.4 175,385 + -0.7 175,386 - +0.8 175,386 - +0.5 175,386 - +0.6 175,521 + +0.4 175,537 + +0.5 175,538 - +1.0 175,538 - +0.6 175,566 + +0.9 175,567 - +0.2 175,606 + +0.2 175,607 - +1.3 175,851 - EX31_RS11215 0.41 +0.9 175,996 - EX31_RS11215 0.62 +1.1 176,029 + EX31_RS11215 0.67 -0.6 176,029 + EX31_RS11215 0.67 -1.3 176,030 - EX31_RS11215 0.67 +0.9 176,030 - EX31_RS11215 0.67 +0.9 176,040 + EX31_RS11215 0.69 -0.7 176,041 - EX31_RS11215 0.69 +1.2 176,046 + EX31_RS11215 0.70 -1.5 176,159 - EX31_RS11215 0.87 +0.5 176,159 - EX31_RS11215 0.87 +0.5 176,344 + +1.2 176,410 - -1.8 176,417 - -0.2 176,460 + +0.0 176,461 - +0.5 176,462 + +0.4 176,484 + +0.5 176,607 + EX31_RS11220 0.14 -1.1 176,608 - EX31_RS11220 0.14 +0.7 176,789 - EX31_RS11220 0.28 -0.0 176,910 - EX31_RS11220 0.37 +0.7 176,968 - EX31_RS11220 0.41 +0.7 177,021 - EX31_RS11220 0.45 +0.9 177,075 + EX31_RS11220 0.49 +2.2 177,198 + EX31_RS11220 0.58 -1.0 177,198 + EX31_RS11220 0.58 -2.1
Or see this region's nucleotide sequence