Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04780 and EX31_RS04785 are separated by 103 nucleotides EX31_RS04785 and EX31_RS04790 overlap by 4 nucleotides EX31_RS04790 and EX31_RS04795 are separated by 209 nucleotides
EX31_RS04780: EX31_RS04780 - phosphoenolpyruvate carboxykinase (ATP), at 73,988 to 75,610
_RS04780
EX31_RS04785: EX31_RS04785 - plasmid stabilization protein, at 75,714 to 75,926
_RS04785
EX31_RS04790: EX31_RS04790 - twitching motility protein PilT, at 75,923 to 76,402
_RS04790
EX31_RS04795: EX31_RS04795 - two-component system sensor histidine kinase EnvZ, at 76,612 to 77,973
_RS04795
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2 at 74.980 kb on + strand, within EX31_RS04780 at 74.981 kb on - strand, within EX31_RS04780 at 75.002 kb on + strand, within EX31_RS04780 at 75.002 kb on + strand, within EX31_RS04780 at 75.002 kb on + strand, within EX31_RS04780 at 75.003 kb on - strand, within EX31_RS04780 at 75.003 kb on - strand, within EX31_RS04780 at 75.052 kb on + strand, within EX31_RS04780 at 75.129 kb on - strand, within EX31_RS04780 at 75.248 kb on + strand, within EX31_RS04780 at 75.258 kb on + strand, within EX31_RS04780 at 75.258 kb on + strand, within EX31_RS04780 at 75.258 kb on + strand, within EX31_RS04780 at 75.258 kb on + strand, within EX31_RS04780 at 75.259 kb on - strand, within EX31_RS04780 at 75.259 kb on - strand, within EX31_RS04780 at 75.259 kb on - strand, within EX31_RS04780 at 75.259 kb on - strand, within EX31_RS04780 at 75.323 kb on - strand, within EX31_RS04780 at 75.334 kb on + strand, within EX31_RS04780 at 75.334 kb on + strand, within EX31_RS04780 at 75.334 kb on + strand, within EX31_RS04780 at 75.334 kb on + strand, within EX31_RS04780 at 75.335 kb on - strand, within EX31_RS04780 at 75.335 kb on - strand, within EX31_RS04780 at 75.335 kb on - strand, within EX31_RS04780 at 75.335 kb on - strand, within EX31_RS04780 at 75.421 kb on + strand, within EX31_RS04780 at 75.421 kb on + strand, within EX31_RS04780 at 75.422 kb on - strand, within EX31_RS04780 at 75.481 kb on + strand at 75.481 kb on + strand at 75.481 kb on + strand at 75.481 kb on + strand at 75.481 kb on + strand at 75.482 kb on - strand at 75.482 kb on - strand at 75.482 kb on - strand at 75.482 kb on - strand at 75.486 kb on - strand at 75.486 kb on - strand at 75.534 kb on + strand at 75.534 kb on + strand at 75.534 kb on + strand at 75.534 kb on + strand at 75.534 kb on + strand at 75.534 kb on + strand at 75.535 kb on - strand at 75.535 kb on - strand at 75.535 kb on - strand at 75.535 kb on - strand at 75.535 kb on - strand at 75.557 kb on + strand at 75.557 kb on + strand at 75.557 kb on + strand at 75.558 kb on - strand at 75.566 kb on - strand at 75.609 kb on - strand at 75.760 kb on + strand, within EX31_RS04785 at 75.760 kb on + strand, within EX31_RS04785 at 75.761 kb on - strand, within EX31_RS04785 at 75.817 kb on + strand, within EX31_RS04785 at 75.820 kb on + strand, within EX31_RS04785 at 75.820 kb on + strand, within EX31_RS04785 at 75.820 kb on + strand, within EX31_RS04785 at 75.820 kb on + strand, within EX31_RS04785 at 75.839 kb on + strand, within EX31_RS04785 at 75.839 kb on + strand, within EX31_RS04785 at 75.839 kb on + strand, within EX31_RS04785 at 75.839 kb on + strand, within EX31_RS04785 at 75.840 kb on - strand, within EX31_RS04785 at 75.840 kb on - strand, within EX31_RS04785 at 75.937 kb on + strand at 75.938 kb on - strand at 75.962 kb on - strand at 76.022 kb on + strand, within EX31_RS04790 at 76.022 kb on + strand, within EX31_RS04790 at 76.022 kb on + strand, within EX31_RS04790 at 76.022 kb on + strand, within EX31_RS04790 at 76.022 kb on + strand, within EX31_RS04790 at 76.022 kb on + strand, within EX31_RS04790 at 76.023 kb on - strand, within EX31_RS04790 at 76.023 kb on - strand, within EX31_RS04790 at 76.023 kb on - strand, within EX31_RS04790 at 76.023 kb on - strand, within EX31_RS04790 at 76.023 kb on - strand, within EX31_RS04790 at 76.023 kb on - strand, within EX31_RS04790 at 76.066 kb on + strand, within EX31_RS04790 at 76.176 kb on - strand, within EX31_RS04790 at 76.176 kb on - strand, within EX31_RS04790 at 76.176 kb on - strand, within EX31_RS04790 at 76.214 kb on - strand, within EX31_RS04790 at 76.234 kb on + strand, within EX31_RS04790 at 76.234 kb on + strand, within EX31_RS04790 at 76.320 kb on + strand, within EX31_RS04790 at 76.320 kb on + strand, within EX31_RS04790 at 76.320 kb on + strand, within EX31_RS04790 at 76.320 kb on + strand, within EX31_RS04790 at 76.320 kb on + strand, within EX31_RS04790 at 76.321 kb on - strand, within EX31_RS04790 at 76.321 kb on - strand, within EX31_RS04790 at 76.321 kb on - strand, within EX31_RS04790 at 76.321 kb on - strand, within EX31_RS04790 at 76.321 kb on - strand, within EX31_RS04790 at 76.324 kb on + strand, within EX31_RS04790 at 76.324 kb on + strand, within EX31_RS04790 at 76.324 kb on + strand, within EX31_RS04790 at 76.324 kb on + strand, within EX31_RS04790 at 76.325 kb on - strand, within EX31_RS04790 at 76.325 kb on - strand, within EX31_RS04790 at 76.376 kb on + strand at 76.376 kb on + strand at 76.376 kb on + strand at 76.376 kb on + strand at 76.376 kb on + strand at 76.376 kb on + strand at 76.376 kb on + strand at 76.376 kb on + strand at 76.377 kb on - strand at 76.377 kb on - strand at 76.377 kb on - strand at 76.377 kb on - strand at 76.377 kb on - strand at 76.377 kb on - strand at 76.377 kb on - strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.379 kb on + strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.380 kb on - strand at 76.400 kb on + strand at 76.400 kb on + strand at 76.401 kb on - strand at 76.454 kb on - strand at 76.494 kb on - strand at 76.494 kb on - strand at 76.515 kb on - strand at 76.539 kb on - strand at 76.539 kb on - strand at 76.539 kb on - strand at 76.539 kb on - strand at 76.539 kb on - strand at 76.597 kb on + strand at 76.598 kb on - strand at 76.670 kb on + strand at 76.671 kb on - strand at 76.737 kb on + strand at 76.737 kb on + strand at 76.738 kb on - strand at 76.779 kb on + strand, within EX31_RS04795 at 76.779 kb on + strand, within EX31_RS04795 at 76.780 kb on - strand, within EX31_RS04795 at 76.824 kb on + strand, within EX31_RS04795 at 76.824 kb on + strand, within EX31_RS04795 at 76.824 kb on + strand, within EX31_RS04795 at 76.824 kb on + strand, within EX31_RS04795 at 76.824 kb on + strand, within EX31_RS04795 at 76.824 kb on + strand, within EX31_RS04795 at 76.824 kb on + strand, within EX31_RS04795 at 76.824 kb on + strand, within EX31_RS04795 at 76.825 kb on - strand, within EX31_RS04795 at 76.825 kb on - strand, within EX31_RS04795 at 76.825 kb on - strand, within EX31_RS04795 at 76.825 kb on - strand, within EX31_RS04795 at 76.825 kb on - strand, within EX31_RS04795 at 76.905 kb on + strand, within EX31_RS04795 at 76.906 kb on - strand, within EX31_RS04795 at 76.944 kb on + strand, within EX31_RS04795 at 76.944 kb on + strand, within EX31_RS04795 at 76.945 kb on - strand, within EX31_RS04795 at 76.945 kb on - strand, within EX31_RS04795 at 76.966 kb on - strand, within EX31_RS04795 at 77.030 kb on + strand, within EX31_RS04795 at 77.071 kb on - strand, within EX31_RS04795 at 77.071 kb on - strand, within EX31_RS04795 at 77.115 kb on - strand, within EX31_RS04795 at 77.160 kb on + strand, within EX31_RS04795 at 77.180 kb on + strand, within EX31_RS04795 at 77.180 kb on + strand, within EX31_RS04795 at 77.181 kb on - strand, within EX31_RS04795 at 77.181 kb on - strand, within EX31_RS04795 at 77.181 kb on - strand, within EX31_RS04795 at 77.181 kb on - strand, within EX31_RS04795 at 77.272 kb on - strand, within EX31_RS04795 at 77.272 kb on - strand, within EX31_RS04795 at 77.314 kb on - strand, within EX31_RS04795 at 77.352 kb on - strand, within EX31_RS04795 at 77.373 kb on + strand, within EX31_RS04795 at 77.373 kb on + strand, within EX31_RS04795 at 77.374 kb on - strand, within EX31_RS04795 at 77.374 kb on - strand, within EX31_RS04795
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 74,980 + EX31_RS04780 0.61 -0.2 74,981 - EX31_RS04780 0.61 -0.9 75,002 + EX31_RS04780 0.62 -2.6 75,002 + EX31_RS04780 0.62 -0.5 75,002 + EX31_RS04780 0.62 +0.7 75,003 - EX31_RS04780 0.63 +0.5 75,003 - EX31_RS04780 0.63 +0.9 75,052 + EX31_RS04780 0.66 +0.2 75,129 - EX31_RS04780 0.70 -0.4 75,248 + EX31_RS04780 0.78 -1.0 75,258 + EX31_RS04780 0.78 +0.6 75,258 + EX31_RS04780 0.78 +0.7 75,258 + EX31_RS04780 0.78 -0.3 75,258 + EX31_RS04780 0.78 +0.3 75,259 - EX31_RS04780 0.78 +0.9 75,259 - EX31_RS04780 0.78 -0.5 75,259 - EX31_RS04780 0.78 -1.0 75,259 - EX31_RS04780 0.78 -0.0 75,323 - EX31_RS04780 0.82 -1.1 75,334 + EX31_RS04780 0.83 -0.2 75,334 + EX31_RS04780 0.83 +0.2 75,334 + EX31_RS04780 0.83 -0.3 75,334 + EX31_RS04780 0.83 -0.5 75,335 - EX31_RS04780 0.83 -0.1 75,335 - EX31_RS04780 0.83 -0.8 75,335 - EX31_RS04780 0.83 +0.2 75,335 - EX31_RS04780 0.83 -0.5 75,421 + EX31_RS04780 0.88 +0.3 75,421 + EX31_RS04780 0.88 +0.5 75,422 - EX31_RS04780 0.88 -0.4 75,481 + -0.5 75,481 + -1.3 75,481 + +0.6 75,481 + +0.5 75,481 + -0.2 75,482 - -1.2 75,482 - +0.3 75,482 - -0.2 75,482 - -1.1 75,486 - -0.4 75,486 - +0.5 75,534 + +0.1 75,534 + -0.4 75,534 + -1.2 75,534 + -0.6 75,534 + +0.4 75,534 + +0.7 75,535 - +0.1 75,535 - -0.8 75,535 - +0.6 75,535 - -0.1 75,535 - -0.4 75,557 + -0.1 75,557 + +0.3 75,557 + -0.7 75,558 - +0.7 75,566 - -0.4 75,609 - -0.3 75,760 + EX31_RS04785 0.22 -0.0 75,760 + EX31_RS04785 0.22 -1.0 75,761 - EX31_RS04785 0.22 +0.2 75,817 + EX31_RS04785 0.48 +0.5 75,820 + EX31_RS04785 0.50 +0.4 75,820 + EX31_RS04785 0.50 -0.4 75,820 + EX31_RS04785 0.50 +1.8 75,820 + EX31_RS04785 0.50 -0.7 75,839 + EX31_RS04785 0.59 +0.5 75,839 + EX31_RS04785 0.59 -0.6 75,839 + EX31_RS04785 0.59 -0.8 75,839 + EX31_RS04785 0.59 -0.5 75,840 - EX31_RS04785 0.59 -1.6 75,840 - EX31_RS04785 0.59 -0.6 75,937 + -0.3 75,938 - -0.6 75,962 - -0.4 76,022 + EX31_RS04790 0.21 -0.3 76,022 + EX31_RS04790 0.21 +0.3 76,022 + EX31_RS04790 0.21 +1.3 76,022 + EX31_RS04790 0.21 +0.1 76,022 + EX31_RS04790 0.21 +0.7 76,022 + EX31_RS04790 0.21 -0.1 76,023 - EX31_RS04790 0.21 +0.1 76,023 - EX31_RS04790 0.21 -0.6 76,023 - EX31_RS04790 0.21 +0.5 76,023 - EX31_RS04790 0.21 -0.1 76,023 - EX31_RS04790 0.21 +0.1 76,023 - EX31_RS04790 0.21 -1.4 76,066 + EX31_RS04790 0.30 +0.9 76,176 - EX31_RS04790 0.53 -1.4 76,176 - EX31_RS04790 0.53 +1.1 76,176 - EX31_RS04790 0.53 +0.2 76,214 - EX31_RS04790 0.61 +0.0 76,234 + EX31_RS04790 0.65 +0.5 76,234 + EX31_RS04790 0.65 -0.9 76,320 + EX31_RS04790 0.83 +0.9 76,320 + EX31_RS04790 0.83 -0.0 76,320 + EX31_RS04790 0.83 -0.2 76,320 + EX31_RS04790 0.83 +0.5 76,320 + EX31_RS04790 0.83 -1.4 76,321 - EX31_RS04790 0.83 +0.1 76,321 - EX31_RS04790 0.83 +0.2 76,321 - EX31_RS04790 0.83 -0.3 76,321 - EX31_RS04790 0.83 -0.6 76,321 - EX31_RS04790 0.83 -0.1 76,324 + EX31_RS04790 0.84 -0.2 76,324 + EX31_RS04790 0.84 -0.2 76,324 + EX31_RS04790 0.84 -0.6 76,324 + EX31_RS04790 0.84 -0.2 76,325 - EX31_RS04790 0.84 -0.4 76,325 - EX31_RS04790 0.84 +0.0 76,376 + -0.1 76,376 + +0.4 76,376 + +0.5 76,376 + -0.6 76,376 + -0.3 76,376 + -1.2 76,376 + -0.4 76,376 + +0.4 76,377 - -0.5 76,377 - -0.8 76,377 - +0.0 76,377 - -0.1 76,377 - -0.2 76,377 - -0.2 76,377 - -0.8 76,379 + +1.0 76,379 + -0.5 76,379 + -0.1 76,379 + +0.0 76,379 + -0.2 76,379 + +0.4 76,379 + -0.4 76,379 + +0.1 76,379 + -0.2 76,379 + -0.5 76,379 + -0.5 76,379 + +0.5 76,379 + -0.7 76,379 + -0.5 76,379 + -1.8 76,379 + +0.3 76,379 + -1.2 76,380 - -0.4 76,380 - +0.2 76,380 - -0.2 76,380 - +1.0 76,380 - -0.4 76,380 - +0.3 76,380 - +0.0 76,380 - +0.5 76,380 - +0.0 76,380 - +1.1 76,380 - +0.3 76,380 - +0.0 76,380 - -1.2 76,380 - -0.0 76,380 - +0.4 76,380 - -1.0 76,400 + -0.4 76,400 + +0.5 76,401 - -1.0 76,454 - -0.8 76,494 - -0.2 76,494 - -0.7 76,515 - -0.6 76,539 - -1.4 76,539 - +0.2 76,539 - -0.3 76,539 - -1.2 76,539 - -0.4 76,597 + +0.2 76,598 - -0.0 76,670 + -1.0 76,671 - +0.1 76,737 + +0.4 76,737 + +0.0 76,738 - +0.0 76,779 + EX31_RS04795 0.12 +0.5 76,779 + EX31_RS04795 0.12 -0.8 76,780 - EX31_RS04795 0.12 +0.1 76,824 + EX31_RS04795 0.16 +0.2 76,824 + EX31_RS04795 0.16 -1.0 76,824 + EX31_RS04795 0.16 +0.2 76,824 + EX31_RS04795 0.16 +0.3 76,824 + EX31_RS04795 0.16 -0.3 76,824 + EX31_RS04795 0.16 -0.2 76,824 + EX31_RS04795 0.16 +0.1 76,824 + EX31_RS04795 0.16 +1.2 76,825 - EX31_RS04795 0.16 +0.0 76,825 - EX31_RS04795 0.16 -0.1 76,825 - EX31_RS04795 0.16 -0.5 76,825 - EX31_RS04795 0.16 +0.5 76,825 - EX31_RS04795 0.16 +0.6 76,905 + EX31_RS04795 0.22 -0.7 76,906 - EX31_RS04795 0.22 +0.4 76,944 + EX31_RS04795 0.24 -0.7 76,944 + EX31_RS04795 0.24 -0.9 76,945 - EX31_RS04795 0.24 +0.7 76,945 - EX31_RS04795 0.24 -1.9 76,966 - EX31_RS04795 0.26 +0.2 77,030 + EX31_RS04795 0.31 +0.9 77,071 - EX31_RS04795 0.34 +1.1 77,071 - EX31_RS04795 0.34 -0.2 77,115 - EX31_RS04795 0.37 -0.1 77,160 + EX31_RS04795 0.40 -0.2 77,180 + EX31_RS04795 0.42 -0.3 77,180 + EX31_RS04795 0.42 +0.2 77,181 - EX31_RS04795 0.42 +0.5 77,181 - EX31_RS04795 0.42 -0.2 77,181 - EX31_RS04795 0.42 -0.6 77,181 - EX31_RS04795 0.42 +0.3 77,272 - EX31_RS04795 0.48 +0.1 77,272 - EX31_RS04795 0.48 -0.2 77,314 - EX31_RS04795 0.52 +0.0 77,352 - EX31_RS04795 0.54 -0.6 77,373 + EX31_RS04795 0.56 -0.2 77,373 + EX31_RS04795 0.56 -0.3 77,374 - EX31_RS04795 0.56 +0.1 77,374 - EX31_RS04795 0.56 -0.0
Or see this region's nucleotide sequence