Strain Fitness in Rahnella sp. WP5 around EX31_RS01170

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS01165 and EX31_RS01170 are separated by 739 nucleotidesEX31_RS01170 and EX31_RS01175 are separated by 24 nucleotidesEX31_RS01175 and EX31_RS01180 overlap by 7 nucleotides EX31_RS01165: EX31_RS01165 - anion permease, at 255,562 to 257,073 _RS01165 EX31_RS01170: EX31_RS01170 - flavocytochrome c, at 257,813 to 260,590 _RS01170 EX31_RS01175: EX31_RS01175 - FAD:protein FMN transferase, at 260,615 to 261,577 _RS01175 EX31_RS01180: EX31_RS01180 - two-component system response regulator DcuR, at 261,571 to 262,290 _RS01180 Position (kb) 257 258 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 256.990 kb on + strandat 256.990 kb on + strandat 256.990 kb on + strandat 256.990 kb on + strandat 256.991 kb on - strandat 257.077 kb on - strandat 257.085 kb on + strandat 257.085 kb on + strandat 257.090 kb on - strandat 257.100 kb on - strandat 257.100 kb on - strandat 257.114 kb on + strandat 257.115 kb on - strandat 257.115 kb on - strandat 257.115 kb on - strandat 257.119 kb on - strandat 257.119 kb on - strandat 257.119 kb on - strandat 257.220 kb on - strandat 257.249 kb on - strandat 257.250 kb on + strandat 257.523 kb on - strandat 257.551 kb on + strandat 257.552 kb on - strandat 257.753 kb on + strandat 257.809 kb on + strandat 257.835 kb on + strandat 257.836 kb on - strandat 257.948 kb on + strandat 257.949 kb on - strandat 258.011 kb on - strandat 258.335 kb on + strand, within EX31_RS01170at 258.336 kb on - strand, within EX31_RS01170at 258.336 kb on - strand, within EX31_RS01170at 258.462 kb on - strand, within EX31_RS01170at 258.545 kb on + strand, within EX31_RS01170at 258.545 kb on + strand, within EX31_RS01170at 258.545 kb on + strand, within EX31_RS01170at 258.659 kb on + strand, within EX31_RS01170at 258.659 kb on + strand, within EX31_RS01170at 258.659 kb on + strand, within EX31_RS01170at 258.660 kb on - strand, within EX31_RS01170at 258.725 kb on - strand, within EX31_RS01170at 258.758 kb on + strand, within EX31_RS01170at 258.758 kb on + strand, within EX31_RS01170at 258.758 kb on + strand, within EX31_RS01170at 259.118 kb on - strand, within EX31_RS01170at 259.256 kb on + strand, within EX31_RS01170at 259.455 kb on - strand, within EX31_RS01170at 259.492 kb on + strand, within EX31_RS01170at 259.672 kb on + strand, within EX31_RS01170at 259.681 kb on + strand, within EX31_RS01170at 259.681 kb on + strand, within EX31_RS01170at 259.681 kb on + strand, within EX31_RS01170at 259.682 kb on - strand, within EX31_RS01170at 259.685 kb on - strand, within EX31_RS01170at 259.851 kb on - strand, within EX31_RS01170at 259.994 kb on + strand, within EX31_RS01170at 259.995 kb on - strand, within EX31_RS01170at 260.127 kb on - strand, within EX31_RS01170at 260.161 kb on + strand, within EX31_RS01170at 260.177 kb on + strand, within EX31_RS01170at 260.177 kb on + strand, within EX31_RS01170at 260.178 kb on - strand, within EX31_RS01170at 260.276 kb on + strand, within EX31_RS01170at 260.276 kb on + strand, within EX31_RS01170at 260.277 kb on - strand, within EX31_RS01170at 260.360 kb on + strandat 260.360 kb on + strandat 260.360 kb on + strandat 260.361 kb on - strandat 260.361 kb on - strandat 260.533 kb on + strandat 260.533 kb on + strandat 260.533 kb on + strandat 260.609 kb on - strandat 260.609 kb on - strandat 260.611 kb on + strandat 260.611 kb on + strandat 260.611 kb on + strandat 260.611 kb on + strandat 260.611 kb on + strandat 260.611 kb on + strandat 260.612 kb on - strandat 260.643 kb on - strandat 260.692 kb on + strandat 260.692 kb on + strandat 260.693 kb on - strandat 260.786 kb on - strand, within EX31_RS01175at 260.831 kb on + strand, within EX31_RS01175at 260.831 kb on + strand, within EX31_RS01175at 260.832 kb on - strand, within EX31_RS01175at 260.832 kb on - strand, within EX31_RS01175at 260.838 kb on + strand, within EX31_RS01175at 261.077 kb on + strand, within EX31_RS01175at 261.077 kb on + strand, within EX31_RS01175at 261.078 kb on - strand, within EX31_RS01175at 261.079 kb on + strand, within EX31_RS01175at 261.079 kb on + strand, within EX31_RS01175at 261.080 kb on - strand, within EX31_RS01175at 261.153 kb on + strand, within EX31_RS01175at 261.153 kb on + strand, within EX31_RS01175at 261.154 kb on - strand, within EX31_RS01175at 261.154 kb on - strand, within EX31_RS01175at 261.278 kb on + strand, within EX31_RS01175at 261.279 kb on - strand, within EX31_RS01175at 261.279 kb on - strand, within EX31_RS01175at 261.287 kb on + strand, within EX31_RS01175at 261.288 kb on - strand, within EX31_RS01175at 261.288 kb on - strand, within EX31_RS01175at 261.320 kb on - strand, within EX31_RS01175at 261.376 kb on + strand, within EX31_RS01175at 261.422 kb on + strand, within EX31_RS01175at 261.452 kb on + strand, within EX31_RS01175at 261.452 kb on + strand, within EX31_RS01175at 261.452 kb on + strand, within EX31_RS01175at 261.452 kb on + strand, within EX31_RS01175at 261.452 kb on + strand, within EX31_RS01175at 261.452 kb on + strand, within EX31_RS01175at 261.452 kb on + strand, within EX31_RS01175at 261.452 kb on + strand, within EX31_RS01175at 261.453 kb on - strand, within EX31_RS01175at 261.453 kb on - strand, within EX31_RS01175at 261.453 kb on - strand, within EX31_RS01175at 261.453 kb on - strand, within EX31_RS01175at 261.453 kb on - strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.454 kb on + strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.455 kb on - strand, within EX31_RS01175at 261.509 kb on - strandat 261.573 kb on - strandat 261.573 kb on - strandat 261.573 kb on - strandat 261.573 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
256,990 + +0.1
256,990 + -1.9
256,990 + +0.5
256,990 + +0.1
256,991 - +0.1
257,077 - +0.5
257,085 + -0.2
257,085 + +0.5
257,090 - -0.2
257,100 - -0.1
257,100 - +0.6
257,114 + +1.7
257,115 - +0.3
257,115 - +1.1
257,115 - -0.1
257,119 - -0.1
257,119 - -0.5
257,119 - +0.4
257,220 - -0.5
257,249 - +1.7
257,250 + -0.0
257,523 - +0.3
257,551 + -1.7
257,552 - -0.5
257,753 + -0.4
257,809 + -1.1
257,835 + +0.5
257,836 - -1.1
257,948 + +1.0
257,949 - -0.4
258,011 - -0.4
258,335 + EX31_RS01170 0.19 -0.2
258,336 - EX31_RS01170 0.19 +0.2
258,336 - EX31_RS01170 0.19 -1.3
258,462 - EX31_RS01170 0.23 -0.1
258,545 + EX31_RS01170 0.26 +0.1
258,545 + EX31_RS01170 0.26 +0.6
258,545 + EX31_RS01170 0.26 +1.2
258,659 + EX31_RS01170 0.30 -0.6
258,659 + EX31_RS01170 0.30 -0.7
258,659 + EX31_RS01170 0.30 -0.9
258,660 - EX31_RS01170 0.30 +0.8
258,725 - EX31_RS01170 0.33 -0.9
258,758 + EX31_RS01170 0.34 -0.3
258,758 + EX31_RS01170 0.34 -0.4
258,758 + EX31_RS01170 0.34 -1.2
259,118 - EX31_RS01170 0.47 -0.4
259,256 + EX31_RS01170 0.52 -0.7
259,455 - EX31_RS01170 0.59 -0.6
259,492 + EX31_RS01170 0.60 -0.2
259,672 + EX31_RS01170 0.67 -0.6
259,681 + EX31_RS01170 0.67 -0.7
259,681 + EX31_RS01170 0.67 +0.2
259,681 + EX31_RS01170 0.67 +0.5
259,682 - EX31_RS01170 0.67 +0.7
259,685 - EX31_RS01170 0.67 +0.5
259,851 - EX31_RS01170 0.73 -0.9
259,994 + EX31_RS01170 0.79 +0.2
259,995 - EX31_RS01170 0.79 +0.7
260,127 - EX31_RS01170 0.83 +0.0
260,161 + EX31_RS01170 0.85 +0.4
260,177 + EX31_RS01170 0.85 -0.6
260,177 + EX31_RS01170 0.85 -1.9
260,178 - EX31_RS01170 0.85 -0.5
260,276 + EX31_RS01170 0.89 +0.0
260,276 + EX31_RS01170 0.89 -0.3
260,277 - EX31_RS01170 0.89 -0.8
260,360 + +0.2
260,360 + -1.2
260,360 + +0.4
260,361 - -0.6
260,361 - +0.0
260,533 + -0.3
260,533 + +0.8
260,533 + +1.3
260,609 - -3.1
260,609 - +0.4
260,611 + +0.1
260,611 + -0.1
260,611 + -0.2
260,611 + -1.1
260,611 + +0.0
260,611 + +0.0
260,612 - -0.6
260,643 - +0.1
260,692 + -0.3
260,692 + +0.3
260,693 - +0.3
260,786 - EX31_RS01175 0.18 -0.7
260,831 + EX31_RS01175 0.22 -0.3
260,831 + EX31_RS01175 0.22 +0.3
260,832 - EX31_RS01175 0.23 +0.4
260,832 - EX31_RS01175 0.23 -0.7
260,838 + EX31_RS01175 0.23 +0.3
261,077 + EX31_RS01175 0.48 -0.4
261,077 + EX31_RS01175 0.48 +0.2
261,078 - EX31_RS01175 0.48 +1.5
261,079 + EX31_RS01175 0.48 -0.5
261,079 + EX31_RS01175 0.48 +0.3
261,080 - EX31_RS01175 0.48 -0.4
261,153 + EX31_RS01175 0.56 +2.5
261,153 + EX31_RS01175 0.56 +0.0
261,154 - EX31_RS01175 0.56 +0.4
261,154 - EX31_RS01175 0.56 -0.7
261,278 + EX31_RS01175 0.69 -0.5
261,279 - EX31_RS01175 0.69 +3.4
261,279 - EX31_RS01175 0.69 -0.8
261,287 + EX31_RS01175 0.70 -0.9
261,288 - EX31_RS01175 0.70 -1.2
261,288 - EX31_RS01175 0.70 +0.5
261,320 - EX31_RS01175 0.73 -1.2
261,376 + EX31_RS01175 0.79 +1.3
261,422 + EX31_RS01175 0.84 -1.1
261,452 + EX31_RS01175 0.87 -0.4
261,452 + EX31_RS01175 0.87 -0.0
261,452 + EX31_RS01175 0.87 -0.2
261,452 + EX31_RS01175 0.87 -0.2
261,452 + EX31_RS01175 0.87 -0.2
261,452 + EX31_RS01175 0.87 +0.0
261,452 + EX31_RS01175 0.87 -0.6
261,452 + EX31_RS01175 0.87 +0.2
261,453 - EX31_RS01175 0.87 -0.6
261,453 - EX31_RS01175 0.87 -0.2
261,453 - EX31_RS01175 0.87 -1.0
261,453 - EX31_RS01175 0.87 +0.1
261,453 - EX31_RS01175 0.87 +0.0
261,454 + EX31_RS01175 0.87 +0.1
261,454 + EX31_RS01175 0.87 -0.2
261,454 + EX31_RS01175 0.87 -0.6
261,454 + EX31_RS01175 0.87 +0.1
261,454 + EX31_RS01175 0.87 +1.1
261,454 + EX31_RS01175 0.87 +0.8
261,454 + EX31_RS01175 0.87 +0.4
261,454 + EX31_RS01175 0.87 -0.4
261,454 + EX31_RS01175 0.87 +0.9
261,454 + EX31_RS01175 0.87 +0.4
261,454 + EX31_RS01175 0.87 +1.1
261,454 + EX31_RS01175 0.87 +0.1
261,455 - EX31_RS01175 0.87 -1.6
261,455 - EX31_RS01175 0.87 -0.5
261,455 - EX31_RS01175 0.87 +0.9
261,455 - EX31_RS01175 0.87 -1.6
261,455 - EX31_RS01175 0.87 -1.5
261,455 - EX31_RS01175 0.87 +0.3
261,455 - EX31_RS01175 0.87 +0.9
261,455 - EX31_RS01175 0.87 -3.0
261,455 - EX31_RS01175 0.87 +0.8
261,455 - EX31_RS01175 0.87 -0.7
261,455 - EX31_RS01175 0.87 +0.7
261,455 - EX31_RS01175 0.87 +1.9
261,455 - EX31_RS01175 0.87 -0.8
261,455 - EX31_RS01175 0.87 +1.1
261,455 - EX31_RS01175 0.87 +0.4
261,455 - EX31_RS01175 0.87 -1.1
261,455 - EX31_RS01175 0.87 -2.1
261,455 - EX31_RS01175 0.87 -0.5
261,509 - -1.2
261,573 - +0.1
261,573 - +0.3
261,573 - +0.1
261,573 - -0.6

Or see this region's nucleotide sequence