Strain Fitness in Rahnella sp. WP5 around EX31_RS00810

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS00805 and EX31_RS00810 are separated by 2 nucleotidesEX31_RS00810 and EX31_RS00815 are separated by 246 nucleotides EX31_RS00805: EX31_RS00805 - translesion error-prone DNA polymerase V subunit UmuC, at 175,916 to 177,178 _RS00805 EX31_RS00810: EX31_RS00810 - translesion error-prone DNA polymerase V autoproteolytic subunit, at 177,181 to 177,600 _RS00810 EX31_RS00815: EX31_RS00815 - alpha/beta hydrolase, at 177,847 to 178,860 _RS00815 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1at 176.233 kb on + strand, within EX31_RS00805at 176.247 kb on - strand, within EX31_RS00805at 176.272 kb on - strand, within EX31_RS00805at 176.275 kb on - strand, within EX31_RS00805at 176.344 kb on + strand, within EX31_RS00805at 176.345 kb on - strand, within EX31_RS00805at 176.432 kb on - strand, within EX31_RS00805at 176.578 kb on + strand, within EX31_RS00805at 176.582 kb on - strand, within EX31_RS00805at 176.647 kb on + strand, within EX31_RS00805at 176.736 kb on - strand, within EX31_RS00805at 176.798 kb on + strand, within EX31_RS00805at 176.804 kb on - strand, within EX31_RS00805at 177.034 kb on + strand, within EX31_RS00805at 177.281 kb on - strand, within EX31_RS00810at 177.286 kb on + strand, within EX31_RS00810at 177.287 kb on - strand, within EX31_RS00810at 177.287 kb on - strand, within EX31_RS00810at 177.300 kb on + strand, within EX31_RS00810at 177.359 kb on - strand, within EX31_RS00810at 177.386 kb on - strand, within EX31_RS00810at 177.420 kb on + strand, within EX31_RS00810at 177.421 kb on - strand, within EX31_RS00810at 177.421 kb on - strand, within EX31_RS00810at 177.421 kb on - strand, within EX31_RS00810at 177.421 kb on - strand, within EX31_RS00810at 177.446 kb on + strand, within EX31_RS00810at 177.446 kb on + strand, within EX31_RS00810at 177.446 kb on + strand, within EX31_RS00810at 177.446 kb on + strand, within EX31_RS00810at 177.447 kb on - strand, within EX31_RS00810at 177.503 kb on + strand, within EX31_RS00810at 177.617 kb on + strandat 177.728 kb on - strandat 177.784 kb on - strandat 177.784 kb on - strandat 177.784 kb on - strandat 177.784 kb on - strandat 177.833 kb on - strandat 177.835 kb on + strandat 177.836 kb on - strandat 177.914 kb on + strandat 177.914 kb on + strandat 177.914 kb on + strandat 177.915 kb on - strandat 178.131 kb on + strand, within EX31_RS00815at 178.132 kb on - strand, within EX31_RS00815at 178.132 kb on - strand, within EX31_RS00815at 178.132 kb on - strand, within EX31_RS00815at 178.132 kb on - strand, within EX31_RS00815at 178.197 kb on + strand, within EX31_RS00815at 178.197 kb on + strand, within EX31_RS00815at 178.198 kb on - strand, within EX31_RS00815at 178.328 kb on + strand, within EX31_RS00815at 178.328 kb on + strand, within EX31_RS00815at 178.328 kb on + strand, within EX31_RS00815at 178.328 kb on + strand, within EX31_RS00815at 178.328 kb on + strand, within EX31_RS00815at 178.328 kb on + strand, within EX31_RS00815at 178.329 kb on - strand, within EX31_RS00815at 178.329 kb on - strand, within EX31_RS00815at 178.329 kb on - strand, within EX31_RS00815at 178.329 kb on - strand, within EX31_RS00815at 178.331 kb on + strand, within EX31_RS00815at 178.331 kb on + strand, within EX31_RS00815at 178.332 kb on - strand, within EX31_RS00815at 178.332 kb on - strand, within EX31_RS00815at 178.332 kb on - strand, within EX31_RS00815at 178.332 kb on - strand, within EX31_RS00815at 178.332 kb on - strand, within EX31_RS00815at 178.332 kb on - strand, within EX31_RS00815at 178.333 kb on + strand, within EX31_RS00815at 178.333 kb on + strand, within EX31_RS00815at 178.334 kb on - strand, within EX31_RS00815at 178.443 kb on - strand, within EX31_RS00815at 178.543 kb on - strand, within EX31_RS00815at 178.549 kb on - strand, within EX31_RS00815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
176,233 + EX31_RS00805 0.25 +0.5
176,247 - EX31_RS00805 0.26 -0.5
176,272 - EX31_RS00805 0.28 +1.6
176,275 - EX31_RS00805 0.28 +0.1
176,344 + EX31_RS00805 0.34 -0.5
176,345 - EX31_RS00805 0.34 -1.1
176,432 - EX31_RS00805 0.41 +1.1
176,578 + EX31_RS00805 0.52 -1.0
176,582 - EX31_RS00805 0.53 -1.3
176,647 + EX31_RS00805 0.58 +1.0
176,736 - EX31_RS00805 0.65 -0.3
176,798 + EX31_RS00805 0.70 -0.2
176,804 - EX31_RS00805 0.70 -0.2
177,034 + EX31_RS00805 0.89 -0.9
177,281 - EX31_RS00810 0.24 -1.4
177,286 + EX31_RS00810 0.25 -0.1
177,287 - EX31_RS00810 0.25 -1.2
177,287 - EX31_RS00810 0.25 -1.0
177,300 + EX31_RS00810 0.28 -0.5
177,359 - EX31_RS00810 0.42 -0.7
177,386 - EX31_RS00810 0.49 -1.1
177,420 + EX31_RS00810 0.57 +1.1
177,421 - EX31_RS00810 0.57 +0.2
177,421 - EX31_RS00810 0.57 -0.6
177,421 - EX31_RS00810 0.57 -0.8
177,421 - EX31_RS00810 0.57 -0.4
177,446 + EX31_RS00810 0.63 -0.3
177,446 + EX31_RS00810 0.63 -0.4
177,446 + EX31_RS00810 0.63 -1.8
177,446 + EX31_RS00810 0.63 -1.1
177,447 - EX31_RS00810 0.63 +0.2
177,503 + EX31_RS00810 0.77 +0.3
177,617 + +0.0
177,728 - -0.7
177,784 - -1.3
177,784 - +0.0
177,784 - +0.0
177,784 - +0.0
177,833 - +0.0
177,835 + -1.3
177,836 - -0.2
177,914 + -1.1
177,914 + -0.2
177,914 + -0.4
177,915 - -0.8
178,131 + EX31_RS00815 0.28 +0.1
178,132 - EX31_RS00815 0.28 +0.0
178,132 - EX31_RS00815 0.28 +0.1
178,132 - EX31_RS00815 0.28 +0.5
178,132 - EX31_RS00815 0.28 +0.3
178,197 + EX31_RS00815 0.35 -0.3
178,197 + EX31_RS00815 0.35 -0.3
178,198 - EX31_RS00815 0.35 -0.8
178,328 + EX31_RS00815 0.47 -0.1
178,328 + EX31_RS00815 0.47 -0.2
178,328 + EX31_RS00815 0.47 -1.0
178,328 + EX31_RS00815 0.47 +0.2
178,328 + EX31_RS00815 0.47 -1.6
178,328 + EX31_RS00815 0.47 -1.0
178,329 - EX31_RS00815 0.48 -0.4
178,329 - EX31_RS00815 0.48 +0.6
178,329 - EX31_RS00815 0.48 +0.3
178,329 - EX31_RS00815 0.48 -0.4
178,331 + EX31_RS00815 0.48 +0.2
178,331 + EX31_RS00815 0.48 -2.9
178,332 - EX31_RS00815 0.48 -0.8
178,332 - EX31_RS00815 0.48 +0.2
178,332 - EX31_RS00815 0.48 -0.3
178,332 - EX31_RS00815 0.48 +0.2
178,332 - EX31_RS00815 0.48 +0.0
178,332 - EX31_RS00815 0.48 +0.2
178,333 + EX31_RS00815 0.48 +0.4
178,333 + EX31_RS00815 0.48 -0.4
178,334 - EX31_RS00815 0.48 -0.3
178,443 - EX31_RS00815 0.59 -0.1
178,543 - EX31_RS00815 0.69 +0.0
178,549 - EX31_RS00815 0.69 +0.2

Or see this region's nucleotide sequence