Strain Fitness in Rahnella sp. WP5 around EX31_RS00800

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00795 and EX31_RS00800 are separated by 367 nucleotidesEX31_RS00800 and EX31_RS00805 are separated by 168 nucleotides EX31_RS00795: EX31_RS00795 - carbon starvation protein A, at 171,790 to 173,943 _RS00795 EX31_RS00800: EX31_RS00800 - family 1 glycosylhydrolase, at 174,311 to 175,747 _RS00800 EX31_RS00805: EX31_RS00805 - translesion error-prone DNA polymerase V subunit UmuC, at 175,916 to 177,178 _RS00805 Position (kb) 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2at 173.312 kb on + strand, within EX31_RS00795at 173.312 kb on + strand, within EX31_RS00795at 173.312 kb on + strand, within EX31_RS00795at 173.312 kb on + strand, within EX31_RS00795at 173.312 kb on + strand, within EX31_RS00795at 173.312 kb on + strand, within EX31_RS00795at 173.312 kb on + strand, within EX31_RS00795at 173.312 kb on + strand, within EX31_RS00795at 173.312 kb on + strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.313 kb on - strand, within EX31_RS00795at 173.322 kb on + strand, within EX31_RS00795at 173.323 kb on - strand, within EX31_RS00795at 173.323 kb on - strand, within EX31_RS00795at 173.343 kb on + strand, within EX31_RS00795at 173.343 kb on + strand, within EX31_RS00795at 173.344 kb on - strand, within EX31_RS00795at 173.419 kb on - strand, within EX31_RS00795at 173.421 kb on + strand, within EX31_RS00795at 173.422 kb on - strand, within EX31_RS00795at 173.677 kb on + strand, within EX31_RS00795at 173.677 kb on + strand, within EX31_RS00795at 173.677 kb on + strand, within EX31_RS00795at 173.678 kb on - strand, within EX31_RS00795at 173.699 kb on + strand, within EX31_RS00795at 173.699 kb on + strand, within EX31_RS00795at 173.699 kb on + strand, within EX31_RS00795at 173.699 kb on + strand, within EX31_RS00795at 173.700 kb on - strand, within EX31_RS00795at 173.700 kb on - strand, within EX31_RS00795at 173.723 kb on - strand, within EX31_RS00795at 173.772 kb on + strandat 173.774 kb on + strandat 173.774 kb on + strandat 173.774 kb on + strandat 173.774 kb on + strandat 173.774 kb on + strandat 173.775 kb on - strandat 173.775 kb on - strandat 173.786 kb on + strandat 173.792 kb on + strandat 173.805 kb on - strandat 173.827 kb on + strandat 173.834 kb on - strandat 173.844 kb on + strandat 173.844 kb on + strandat 173.844 kb on + strandat 173.844 kb on + strandat 173.845 kb on - strandat 173.845 kb on - strandat 173.845 kb on - strandat 173.845 kb on - strandat 173.914 kb on + strandat 173.915 kb on - strandat 173.915 kb on - strandat 173.915 kb on - strandat 173.943 kb on + strandat 173.957 kb on - strandat 173.977 kb on + strandat 173.996 kb on + strandat 174.000 kb on - strandat 174.000 kb on - strandat 174.036 kb on + strandat 174.117 kb on - strandat 174.125 kb on - strandat 174.337 kb on + strandat 174.380 kb on + strandat 174.381 kb on - strandat 174.492 kb on - strand, within EX31_RS00800at 174.498 kb on - strand, within EX31_RS00800at 174.508 kb on + strand, within EX31_RS00800at 174.508 kb on + strand, within EX31_RS00800at 174.608 kb on + strand, within EX31_RS00800at 174.657 kb on - strand, within EX31_RS00800at 174.679 kb on + strand, within EX31_RS00800at 174.680 kb on - strand, within EX31_RS00800at 174.827 kb on - strand, within EX31_RS00800at 174.836 kb on + strand, within EX31_RS00800at 175.043 kb on + strand, within EX31_RS00800at 175.044 kb on - strand, within EX31_RS00800at 175.049 kb on + strand, within EX31_RS00800at 175.057 kb on + strand, within EX31_RS00800at 175.136 kb on - strand, within EX31_RS00800at 175.146 kb on - strand, within EX31_RS00800at 175.146 kb on - strand, within EX31_RS00800at 175.162 kb on - strand, within EX31_RS00800at 175.189 kb on + strand, within EX31_RS00800at 175.225 kb on + strand, within EX31_RS00800at 175.225 kb on + strand, within EX31_RS00800at 175.226 kb on - strand, within EX31_RS00800at 175.236 kb on - strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.384 kb on + strand, within EX31_RS00800at 175.384 kb on + strand, within EX31_RS00800at 175.385 kb on - strand, within EX31_RS00800at 175.385 kb on - strand, within EX31_RS00800at 175.403 kb on + strand, within EX31_RS00800at 175.403 kb on + strand, within EX31_RS00800at 175.460 kb on - strand, within EX31_RS00800at 175.480 kb on + strand, within EX31_RS00800at 175.481 kb on - strand, within EX31_RS00800at 175.506 kb on - strand, within EX31_RS00800at 175.568 kb on + strand, within EX31_RS00800at 175.569 kb on - strand, within EX31_RS00800at 175.570 kb on + strand, within EX31_RS00800at 175.570 kb on + strand, within EX31_RS00800at 175.571 kb on - strand, within EX31_RS00800at 175.571 kb on - strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.586 kb on - strand, within EX31_RS00800at 175.586 kb on - strand, within EX31_RS00800at 175.586 kb on - strand, within EX31_RS00800at 175.586 kb on - strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.601 kb on - strand, within EX31_RS00800at 175.601 kb on - strand, within EX31_RS00800at 175.657 kb on + strandat 175.707 kb on - strandat 175.739 kb on - strandat 175.748 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.911 kb on + strandat 175.932 kb on - strandat 175.932 kb on - strandat 176.042 kb on + strandat 176.163 kb on + strand, within EX31_RS00805at 176.163 kb on + strand, within EX31_RS00805at 176.164 kb on - strand, within EX31_RS00805at 176.233 kb on + strand, within EX31_RS00805at 176.247 kb on - strand, within EX31_RS00805at 176.272 kb on - strand, within EX31_RS00805at 176.275 kb on - strand, within EX31_RS00805at 176.344 kb on + strand, within EX31_RS00805at 176.345 kb on - strand, within EX31_RS00805at 176.432 kb on - strand, within EX31_RS00805at 176.578 kb on + strand, within EX31_RS00805at 176.582 kb on - strand, within EX31_RS00805at 176.647 kb on + strand, within EX31_RS00805at 176.736 kb on - strand, within EX31_RS00805

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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173,312 + EX31_RS00795 0.71 -1.6
173,312 + EX31_RS00795 0.71 -0.3
173,312 + EX31_RS00795 0.71 -1.7
173,312 + EX31_RS00795 0.71 -0.0
173,312 + EX31_RS00795 0.71 +0.8
173,312 + EX31_RS00795 0.71 +1.6
173,312 + EX31_RS00795 0.71 +0.7
173,312 + EX31_RS00795 0.71 -1.3
173,312 + EX31_RS00795 0.71 -1.0
173,313 - EX31_RS00795 0.71 +0.5
173,313 - EX31_RS00795 0.71 +0.5
173,313 - EX31_RS00795 0.71 -0.9
173,313 - EX31_RS00795 0.71 -1.1
173,313 - EX31_RS00795 0.71 +0.1
173,313 - EX31_RS00795 0.71 -0.2
173,313 - EX31_RS00795 0.71 +0.2
173,313 - EX31_RS00795 0.71 +0.0
173,313 - EX31_RS00795 0.71 -1.1
173,313 - EX31_RS00795 0.71 +1.0
173,313 - EX31_RS00795 0.71 +0.5
173,313 - EX31_RS00795 0.71 +1.5
173,313 - EX31_RS00795 0.71 +0.6
173,322 + EX31_RS00795 0.71 +0.3
173,323 - EX31_RS00795 0.71 -0.4
173,323 - EX31_RS00795 0.71 -0.4
173,343 + EX31_RS00795 0.72 -1.4
173,343 + EX31_RS00795 0.72 -1.8
173,344 - EX31_RS00795 0.72 +0.3
173,419 - EX31_RS00795 0.76 -0.0
173,421 + EX31_RS00795 0.76 +1.2
173,422 - EX31_RS00795 0.76 +0.2
173,677 + EX31_RS00795 0.88 -1.2
173,677 + EX31_RS00795 0.88 +0.8
173,677 + EX31_RS00795 0.88 -0.2
173,678 - EX31_RS00795 0.88 +0.0
173,699 + EX31_RS00795 0.89 -1.2
173,699 + EX31_RS00795 0.89 -1.4
173,699 + EX31_RS00795 0.89 -1.4
173,699 + EX31_RS00795 0.89 -0.1
173,700 - EX31_RS00795 0.89 +0.3
173,700 - EX31_RS00795 0.89 +0.0
173,723 - EX31_RS00795 0.90 -0.6
173,772 + +0.2
173,774 + -0.2
173,774 + +1.6
173,774 + -0.4
173,774 + +0.6
173,774 + +0.7
173,775 - +0.5
173,775 - +0.8
173,786 + -0.1
173,792 + +2.0
173,805 - +1.3
173,827 + -2.1
173,834 - +0.9
173,844 + +0.2
173,844 + -0.1
173,844 + -0.1
173,844 + -0.6
173,845 - -0.7
173,845 - -1.0
173,845 - +0.1
173,845 - -0.0
173,914 + -1.0
173,915 - -0.6
173,915 - +1.3
173,915 - +0.0
173,943 + -0.3
173,957 - +0.4
173,977 + -1.8
173,996 + +1.5
174,000 - -0.7
174,000 - -1.0
174,036 + -0.2
174,117 - +0.3
174,125 - -1.1
174,337 + -0.1
174,380 + -0.3
174,381 - -0.2
174,492 - EX31_RS00800 0.13 +1.2
174,498 - EX31_RS00800 0.13 +0.6
174,508 + EX31_RS00800 0.14 -1.5
174,508 + EX31_RS00800 0.14 -0.1
174,608 + EX31_RS00800 0.21 -1.5
174,657 - EX31_RS00800 0.24 +0.3
174,679 + EX31_RS00800 0.26 -0.2
174,680 - EX31_RS00800 0.26 -0.1
174,827 - EX31_RS00800 0.36 -0.7
174,836 + EX31_RS00800 0.37 +0.4
175,043 + EX31_RS00800 0.51 -0.8
175,044 - EX31_RS00800 0.51 -0.9
175,049 + EX31_RS00800 0.51 +0.0
175,057 + EX31_RS00800 0.52 +0.6
175,136 - EX31_RS00800 0.57 -0.3
175,146 - EX31_RS00800 0.58 -0.3
175,146 - EX31_RS00800 0.58 +1.0
175,162 - EX31_RS00800 0.59 +0.1
175,189 + EX31_RS00800 0.61 -0.4
175,225 + EX31_RS00800 0.64 -2.0
175,225 + EX31_RS00800 0.64 +0.5
175,226 - EX31_RS00800 0.64 +0.6
175,236 - EX31_RS00800 0.64 -1.1
175,253 + EX31_RS00800 0.66 -1.7
175,253 + EX31_RS00800 0.66 -0.8
175,253 + EX31_RS00800 0.66 -0.5
175,253 + EX31_RS00800 0.66 -2.0
175,253 + EX31_RS00800 0.66 -0.3
175,253 + EX31_RS00800 0.66 -0.2
175,253 + EX31_RS00800 0.66 -1.1
175,254 - EX31_RS00800 0.66 -0.4
175,254 - EX31_RS00800 0.66 -1.4
175,254 - EX31_RS00800 0.66 -0.7
175,254 - EX31_RS00800 0.66 -1.9
175,254 - EX31_RS00800 0.66 -0.1
175,384 + EX31_RS00800 0.75 -0.3
175,384 + EX31_RS00800 0.75 -1.7
175,385 - EX31_RS00800 0.75 +0.5
175,385 - EX31_RS00800 0.75 -1.1
175,403 + EX31_RS00800 0.76 -0.1
175,403 + EX31_RS00800 0.76 -0.7
175,460 - EX31_RS00800 0.80 -0.6
175,480 + EX31_RS00800 0.81 -1.0
175,481 - EX31_RS00800 0.81 -0.3
175,506 - EX31_RS00800 0.83 -0.5
175,568 + EX31_RS00800 0.87 -0.4
175,569 - EX31_RS00800 0.88 +1.0
175,570 + EX31_RS00800 0.88 +0.4
175,570 + EX31_RS00800 0.88 -0.1
175,571 - EX31_RS00800 0.88 -0.9
175,571 - EX31_RS00800 0.88 -0.5
175,585 + EX31_RS00800 0.89 +0.2
175,585 + EX31_RS00800 0.89 -0.0
175,585 + EX31_RS00800 0.89 -0.4
175,585 + EX31_RS00800 0.89 +0.8
175,585 + EX31_RS00800 0.89 -0.0
175,585 + EX31_RS00800 0.89 +0.7
175,585 + EX31_RS00800 0.89 +0.7
175,586 - EX31_RS00800 0.89 -0.8
175,586 - EX31_RS00800 0.89 -0.5
175,586 - EX31_RS00800 0.89 +0.2
175,586 - EX31_RS00800 0.89 -0.6
175,600 + EX31_RS00800 0.90 -0.4
175,600 + EX31_RS00800 0.90 -2.2
175,600 + EX31_RS00800 0.90 -1.9
175,600 + EX31_RS00800 0.90 -0.7
175,600 + EX31_RS00800 0.90 +1.0
175,600 + EX31_RS00800 0.90 -0.3
175,600 + EX31_RS00800 0.90 +0.9
175,600 + EX31_RS00800 0.90 +0.4
175,600 + EX31_RS00800 0.90 +0.2
175,601 - EX31_RS00800 0.90 -0.5
175,601 - EX31_RS00800 0.90 +0.0
175,657 + -0.8
175,707 - -2.5
175,739 - -1.7
175,748 + +0.4
175,807 + -0.6
175,807 + -0.7
175,807 + -0.5
175,911 + -0.6
175,932 - -0.5
175,932 - -0.8
176,042 + -2.2
176,163 + EX31_RS00805 0.20 -1.4
176,163 + EX31_RS00805 0.20 -0.8
176,164 - EX31_RS00805 0.20 -0.5
176,233 + EX31_RS00805 0.25 +0.5
176,247 - EX31_RS00805 0.26 -0.5
176,272 - EX31_RS00805 0.28 +1.6
176,275 - EX31_RS00805 0.28 +0.1
176,344 + EX31_RS00805 0.34 -0.5
176,345 - EX31_RS00805 0.34 -1.1
176,432 - EX31_RS00805 0.41 +1.1
176,578 + EX31_RS00805 0.52 -1.0
176,582 - EX31_RS00805 0.53 -1.3
176,647 + EX31_RS00805 0.58 +1.0
176,736 - EX31_RS00805 0.65 -0.3

Or see this region's nucleotide sequence