Strain Fitness in Rahnella sp. WP5 around EX31_RS23325

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23320 and EX31_RS23325 are separated by 182 nucleotidesEX31_RS23325 and EX31_RS23330 overlap by 11 nucleotidesEX31_RS23330 and EX31_RS23335 overlap by 4 nucleotides EX31_RS23320: EX31_RS23320 - alpha-D-glucose phosphate-specific phosphoglucomutase, at 424,519 to 426,162 _RS23320 EX31_RS23325: EX31_RS23325 - PadR family transcriptional regulator, at 426,345 to 427,061 _RS23325 EX31_RS23330: EX31_RS23330 - two-component system response regulator KdpE, at 427,051 to 427,740 _RS23330 EX31_RS23335: EX31_RS23335 - two-component system sensor histidine kinase KdbD, at 427,737 to 430,433 _RS23335 Position (kb) 426 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 425.424 kb on + strand, within EX31_RS23320at 425.437 kb on + strand, within EX31_RS23320at 425.736 kb on + strand, within EX31_RS23320at 425.815 kb on + strand, within EX31_RS23320at 425.815 kb on + strand, within EX31_RS23320at 425.815 kb on + strand, within EX31_RS23320at 425.815 kb on + strand, within EX31_RS23320at 425.815 kb on + strand, within EX31_RS23320at 425.815 kb on + strand, within EX31_RS23320at 425.851 kb on + strand, within EX31_RS23320at 425.852 kb on - strand, within EX31_RS23320at 425.859 kb on + strand, within EX31_RS23320at 425.860 kb on - strand, within EX31_RS23320at 426.061 kb on + strandat 426.061 kb on + strandat 426.061 kb on + strandat 426.061 kb on + strandat 426.070 kb on + strandat 426.070 kb on + strandat 426.156 kb on + strandat 426.156 kb on + strandat 426.160 kb on + strandat 426.160 kb on + strandat 426.160 kb on + strandat 426.160 kb on + strandat 426.160 kb on + strandat 426.196 kb on - strandat 426.251 kb on + strandat 426.251 kb on + strandat 426.251 kb on + strandat 426.251 kb on + strandat 426.251 kb on + strandat 426.251 kb on + strandat 426.252 kb on - strandat 426.255 kb on + strandat 426.256 kb on - strandat 426.295 kb on + strandat 426.322 kb on + strandat 426.328 kb on + strandat 426.329 kb on - strandat 426.329 kb on - strandat 426.339 kb on + strandat 426.339 kb on + strandat 426.562 kb on + strand, within EX31_RS23325at 426.562 kb on + strand, within EX31_RS23325at 426.562 kb on + strand, within EX31_RS23325at 426.562 kb on + strand, within EX31_RS23325at 426.562 kb on + strand, within EX31_RS23325at 426.562 kb on + strand, within EX31_RS23325at 426.562 kb on + strand, within EX31_RS23325at 426.636 kb on + strand, within EX31_RS23325at 426.678 kb on + strand, within EX31_RS23325at 426.678 kb on + strand, within EX31_RS23325at 426.679 kb on - strand, within EX31_RS23325at 426.682 kb on + strand, within EX31_RS23325at 426.682 kb on + strand, within EX31_RS23325at 427.053 kb on - strandat 427.053 kb on - strandat 427.059 kb on + strandat 427.060 kb on - strandat 427.060 kb on - strandat 427.091 kb on - strandat 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.145 kb on + strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.146 kb on - strand, within EX31_RS23330at 427.189 kb on + strand, within EX31_RS23330at 427.189 kb on + strand, within EX31_RS23330at 427.189 kb on + strand, within EX31_RS23330at 427.190 kb on - strand, within EX31_RS23330at 427.190 kb on - strand, within EX31_RS23330at 427.190 kb on - strand, within EX31_RS23330at 427.202 kb on - strand, within EX31_RS23330at 427.294 kb on - strand, within EX31_RS23330at 427.300 kb on + strand, within EX31_RS23330at 427.301 kb on - strand, within EX31_RS23330at 427.301 kb on - strand, within EX31_RS23330at 427.301 kb on - strand, within EX31_RS23330at 427.504 kb on - strand, within EX31_RS23330at 427.540 kb on - strand, within EX31_RS23330at 427.540 kb on - strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.541 kb on + strand, within EX31_RS23330at 427.542 kb on - strand, within EX31_RS23330at 427.542 kb on - strand, within EX31_RS23330at 427.542 kb on - strand, within EX31_RS23330at 427.542 kb on - strand, within EX31_RS23330at 427.542 kb on - strand, within EX31_RS23330at 427.542 kb on - strand, within EX31_RS23330at 427.542 kb on - strand, within EX31_RS23330at 427.565 kb on - strand, within EX31_RS23330at 427.597 kb on - strand, within EX31_RS23330at 427.646 kb on - strand, within EX31_RS23330at 427.714 kb on + strandat 427.720 kb on - strandat 427.720 kb on - strandat 427.926 kb on - strandat 427.977 kb on - strandat 428.034 kb on - strand, within EX31_RS23335at 428.034 kb on - strand, within EX31_RS23335

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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425,424 + EX31_RS23320 0.55 -1.1
425,437 + EX31_RS23320 0.56 -1.9
425,736 + EX31_RS23320 0.74 -1.4
425,815 + EX31_RS23320 0.79 -2.1
425,815 + EX31_RS23320 0.79 -0.1
425,815 + EX31_RS23320 0.79 -0.9
425,815 + EX31_RS23320 0.79 -2.4
425,815 + EX31_RS23320 0.79 -1.8
425,815 + EX31_RS23320 0.79 -3.4
425,851 + EX31_RS23320 0.81 -2.1
425,852 - EX31_RS23320 0.81 -0.4
425,859 + EX31_RS23320 0.82 -3.1
425,860 - EX31_RS23320 0.82 -0.4
426,061 + -3.1
426,061 + -1.3
426,061 + -2.3
426,061 + -0.3
426,070 + -1.7
426,070 + -1.8
426,156 + +0.4
426,156 + +1.1
426,160 + -0.1
426,160 + +0.1
426,160 + +0.7
426,160 + +0.3
426,160 + +0.0
426,196 - -0.2
426,251 + +0.6
426,251 + +0.1
426,251 + +2.2
426,251 + +0.6
426,251 + -0.2
426,251 + +0.6
426,252 - +0.8
426,255 + -0.6
426,256 - -1.0
426,295 + -0.7
426,322 + -0.1
426,328 + +0.3
426,329 - +0.3
426,329 - +0.7
426,339 + +0.1
426,339 + +0.4
426,562 + EX31_RS23325 0.30 +1.3
426,562 + EX31_RS23325 0.30 +0.5
426,562 + EX31_RS23325 0.30 +0.9
426,562 + EX31_RS23325 0.30 -0.7
426,562 + EX31_RS23325 0.30 +0.8
426,562 + EX31_RS23325 0.30 +0.5
426,562 + EX31_RS23325 0.30 +0.5
426,636 + EX31_RS23325 0.41 +0.5
426,678 + EX31_RS23325 0.46 -0.4
426,678 + EX31_RS23325 0.46 +0.7
426,679 - EX31_RS23325 0.47 -1.4
426,682 + EX31_RS23325 0.47 +0.9
426,682 + EX31_RS23325 0.47 -0.3
427,053 - -0.2
427,053 - -0.5
427,059 + -0.8
427,060 - +0.4
427,060 - -0.5
427,091 - +0.1
427,145 + EX31_RS23330 0.14 -1.2
427,145 + EX31_RS23330 0.14 -0.9
427,145 + EX31_RS23330 0.14 -0.9
427,145 + EX31_RS23330 0.14 -0.4
427,145 + EX31_RS23330 0.14 -0.7
427,145 + EX31_RS23330 0.14 -0.6
427,145 + EX31_RS23330 0.14 -0.1
427,145 + EX31_RS23330 0.14 -0.7
427,145 + EX31_RS23330 0.14 +0.9
427,145 + EX31_RS23330 0.14 +0.3
427,145 + EX31_RS23330 0.14 -1.0
427,145 + EX31_RS23330 0.14 +0.7
427,146 - EX31_RS23330 0.14 -0.7
427,146 - EX31_RS23330 0.14 +1.1
427,146 - EX31_RS23330 0.14 -1.5
427,146 - EX31_RS23330 0.14 +0.1
427,146 - EX31_RS23330 0.14 -1.3
427,146 - EX31_RS23330 0.14 -0.2
427,146 - EX31_RS23330 0.14 -0.5
427,146 - EX31_RS23330 0.14 +0.7
427,146 - EX31_RS23330 0.14 +0.4
427,146 - EX31_RS23330 0.14 -0.4
427,146 - EX31_RS23330 0.14 -0.7
427,146 - EX31_RS23330 0.14 +0.1
427,189 + EX31_RS23330 0.20 -0.3
427,189 + EX31_RS23330 0.20 -0.7
427,189 + EX31_RS23330 0.20 +0.4
427,190 - EX31_RS23330 0.20 +0.4
427,190 - EX31_RS23330 0.20 -0.5
427,190 - EX31_RS23330 0.20 +0.2
427,202 - EX31_RS23330 0.22 +0.1
427,294 - EX31_RS23330 0.35 -0.5
427,300 + EX31_RS23330 0.36 -0.3
427,301 - EX31_RS23330 0.36 -0.1
427,301 - EX31_RS23330 0.36 +0.5
427,301 - EX31_RS23330 0.36 -0.3
427,504 - EX31_RS23330 0.66 -0.2
427,540 - EX31_RS23330 0.71 -0.5
427,540 - EX31_RS23330 0.71 +0.3
427,541 + EX31_RS23330 0.71 -0.7
427,541 + EX31_RS23330 0.71 -0.2
427,541 + EX31_RS23330 0.71 +1.3
427,541 + EX31_RS23330 0.71 -1.0
427,541 + EX31_RS23330 0.71 -0.1
427,541 + EX31_RS23330 0.71 -0.7
427,541 + EX31_RS23330 0.71 -1.4
427,541 + EX31_RS23330 0.71 -0.4
427,541 + EX31_RS23330 0.71 -0.3
427,541 + EX31_RS23330 0.71 -0.3
427,542 - EX31_RS23330 0.71 +1.4
427,542 - EX31_RS23330 0.71 -0.6
427,542 - EX31_RS23330 0.71 +0.8
427,542 - EX31_RS23330 0.71 +1.7
427,542 - EX31_RS23330 0.71 +0.1
427,542 - EX31_RS23330 0.71 +0.2
427,542 - EX31_RS23330 0.71 +0.5
427,565 - EX31_RS23330 0.74 +0.1
427,597 - EX31_RS23330 0.79 +0.3
427,646 - EX31_RS23330 0.86 +0.4
427,714 + -0.2
427,720 - +0.2
427,720 - -0.9
427,926 - +0.4
427,977 - +1.1
428,034 - EX31_RS23335 0.11 +1.0
428,034 - EX31_RS23335 0.11 +0.2

Or see this region's nucleotide sequence