Strain Fitness in Rahnella sp. WP5 around EX31_RS08185

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS08180 and EX31_RS08185 are separated by 315 nucleotidesEX31_RS08185 and EX31_RS08190 are separated by 135 nucleotides EX31_RS08180: EX31_RS08180 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 129,320 to 130,333 _RS08180 EX31_RS08185: EX31_RS08185 - 30S ribosomal protein S21, at 130,649 to 130,864 _RS08185 EX31_RS08190: EX31_RS08190 - DNA primase, at 131,000 to 132,748 _RS08190 Position (kb) 130 131Strain fitness (log2 ratio) -2 -1 0 1at 130.379 kb on - strandat 130.439 kb on + strandat 130.439 kb on + strandat 130.439 kb on + strandat 130.439 kb on + strandat 130.440 kb on - strandat 130.440 kb on - strandat 130.440 kb on - strandat 130.466 kb on + strandat 130.467 kb on - strandat 130.467 kb on - strandat 130.467 kb on - strandat 130.467 kb on - strandat 130.467 kb on - strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.469 kb on - strandat 130.469 kb on - strandat 130.469 kb on - strandat 130.469 kb on - strandat 130.469 kb on - strandat 130.469 kb on - strandat 130.470 kb on + strandat 130.470 kb on + strandat 130.470 kb on + strandat 130.470 kb on + strandat 130.470 kb on + strandat 130.470 kb on + strandat 130.470 kb on + strandat 130.470 kb on + strandat 130.470 kb on + strandat 130.471 kb on - strandat 130.471 kb on - strandat 130.471 kb on - strandat 130.471 kb on - strandat 130.471 kb on - strandat 130.859 kb on + strandat 130.859 kb on + strandat 130.862 kb on + strandat 130.862 kb on + strandat 130.903 kb on + strandat 130.903 kb on + strandat 130.903 kb on + strandat 130.925 kb on + strandat 130.925 kb on + strandat 130.930 kb on + strandat 130.978 kb on + strandat 130.978 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
130,379 - +0.2
130,439 + -0.0
130,439 + +0.4
130,439 + +0.0
130,439 + -0.1
130,440 - +0.2
130,440 - -0.4
130,440 - -0.5
130,466 + -0.3
130,467 - -0.2
130,467 - +0.5
130,467 - +0.3
130,467 - +0.4
130,467 - +0.0
130,468 + -0.2
130,468 + -0.1
130,468 + -0.9
130,468 + -0.1
130,468 + +0.9
130,468 + +1.0
130,468 + -0.2
130,468 + -0.5
130,468 + -0.4
130,468 + +0.2
130,468 + -0.6
130,468 + +0.5
130,469 - -0.1
130,469 - -0.3
130,469 - +0.7
130,469 - -0.4
130,469 - +0.7
130,469 - +0.2
130,470 + +0.3
130,470 + -0.3
130,470 + +0.3
130,470 + -0.4
130,470 + +0.2
130,470 + +0.2
130,470 + +0.4
130,470 + +0.2
130,470 + -0.2
130,471 - +0.1
130,471 - -0.4
130,471 - +0.1
130,471 - -0.7
130,471 - +0.1
130,859 + +1.3
130,859 + -0.1
130,862 + -0.1
130,862 + -0.5
130,903 + -0.7
130,903 + -0.4
130,903 + +0.5
130,925 + -0.5
130,925 + -0.3
130,930 + -0.6
130,978 + -0.5
130,978 + -1.8

Or see this region's nucleotide sequence