Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08170 and EX31_RS08175 are separated by 107 nucleotides EX31_RS08175 and EX31_RS08180 are separated by 180 nucleotides EX31_RS08180 and EX31_RS08185 are separated by 315 nucleotides EX31_RS08185 and EX31_RS08190 are separated by 135 nucleotides
EX31_RS08170: EX31_RS08170 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 128,046 to 128,402
_RS08170
EX31_RS08175: EX31_RS08175 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 128,510 to 129,139
_RS08175
EX31_RS08180: EX31_RS08180 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 129,320 to 130,333
_RS08180
EX31_RS08185: EX31_RS08185 - 30S ribosomal protein S21, at 130,649 to 130,864
_RS08185
EX31_RS08190: EX31_RS08190 - DNA primase, at 131,000 to 132,748
_RS08190
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 128.458 kb on - strand at 128.460 kb on + strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.491 kb on + strand at 128.492 kb on - strand at 128.492 kb on - strand at 128.492 kb on - strand at 128.494 kb on + strand at 128.494 kb on + strand at 128.495 kb on - strand at 128.509 kb on + strand at 128.509 kb on + strand at 128.510 kb on - strand at 128.518 kb on + strand at 128.536 kb on + strand at 128.572 kb on + strand at 128.572 kb on + strand at 128.573 kb on - strand, within EX31_RS08175 at 128.573 kb on - strand, within EX31_RS08175 at 128.649 kb on + strand, within EX31_RS08175 at 128.650 kb on - strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.791 kb on + strand, within EX31_RS08175 at 128.791 kb on + strand, within EX31_RS08175 at 128.791 kb on + strand, within EX31_RS08175 at 128.796 kb on - strand, within EX31_RS08175 at 128.796 kb on - strand, within EX31_RS08175 at 128.796 kb on - strand, within EX31_RS08175 at 128.969 kb on + strand, within EX31_RS08175 at 128.969 kb on + strand, within EX31_RS08175 at 128.969 kb on + strand, within EX31_RS08175 at 128.970 kb on - strand, within EX31_RS08175 at 128.970 kb on - strand, within EX31_RS08175 at 128.970 kb on - strand, within EX31_RS08175 at 128.970 kb on - strand, within EX31_RS08175 at 129.049 kb on + strand, within EX31_RS08175 at 129.049 kb on + strand, within EX31_RS08175 at 129.050 kb on - strand, within EX31_RS08175 at 129.050 kb on - strand, within EX31_RS08175 at 129.091 kb on + strand at 129.092 kb on - strand at 129.092 kb on - strand at 129.127 kb on + strand at 129.127 kb on + strand at 129.127 kb on + strand at 129.128 kb on - strand at 129.137 kb on + strand at 129.137 kb on + strand at 129.137 kb on + strand at 129.138 kb on - strand at 129.138 kb on - strand at 129.138 kb on - strand at 129.144 kb on + strand at 129.164 kb on + strand at 129.164 kb on + strand at 129.266 kb on + strand at 129.266 kb on + strand at 129.266 kb on + strand at 129.266 kb on + strand at 129.266 kb on + strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 130.379 kb on - strand at 130.439 kb on + strand at 130.439 kb on + strand at 130.439 kb on + strand at 130.439 kb on + strand at 130.440 kb on - strand at 130.440 kb on - strand at 130.440 kb on - strand at 130.466 kb on + strand at 130.467 kb on - strand at 130.467 kb on - strand at 130.467 kb on - strand at 130.467 kb on - strand at 130.467 kb on - strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.468 kb on + strand at 130.469 kb on - strand at 130.469 kb on - strand at 130.469 kb on - strand at 130.469 kb on - strand at 130.469 kb on - strand at 130.469 kb on - strand at 130.470 kb on + strand at 130.470 kb on + strand at 130.470 kb on + strand at 130.470 kb on + strand at 130.470 kb on + strand at 130.470 kb on + strand at 130.470 kb on + strand at 130.470 kb on + strand at 130.470 kb on + strand at 130.471 kb on - strand at 130.471 kb on - strand at 130.471 kb on - strand at 130.471 kb on - strand at 130.471 kb on - strand at 130.859 kb on + strand at 130.859 kb on + strand at 130.862 kb on + strand at 130.862 kb on + strand at 130.903 kb on + strand at 130.903 kb on + strand at 130.903 kb on + strand at 130.925 kb on + strand at 130.925 kb on + strand at 130.930 kb on + strand at 130.978 kb on + strand at 130.978 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 128,458 - +0.8 128,460 + -0.3 128,461 - -0.4 128,461 - +0.1 128,461 - -0.2 128,461 - +1.0 128,461 - +0.4 128,461 - +0.5 128,461 - -0.5 128,491 + +0.7 128,492 - -0.2 128,492 - -0.3 128,492 - -0.3 128,494 + -0.4 128,494 + -0.0 128,495 - +0.1 128,509 + +0.7 128,509 + -0.1 128,510 - -0.7 128,518 + +0.3 128,536 + +0.8 128,572 + +0.8 128,572 + +0.6 128,573 - EX31_RS08175 0.10 +0.1 128,573 - EX31_RS08175 0.10 -0.3 128,649 + EX31_RS08175 0.22 +0.1 128,650 - EX31_RS08175 0.22 -0.4 128,749 + EX31_RS08175 0.38 -0.6 128,749 + EX31_RS08175 0.38 +0.2 128,749 + EX31_RS08175 0.38 +0.1 128,749 + EX31_RS08175 0.38 +1.2 128,749 + EX31_RS08175 0.38 -0.6 128,750 - EX31_RS08175 0.38 -0.6 128,750 - EX31_RS08175 0.38 +0.5 128,750 - EX31_RS08175 0.38 +0.2 128,750 - EX31_RS08175 0.38 +0.1 128,750 - EX31_RS08175 0.38 -0.2 128,750 - EX31_RS08175 0.38 -0.1 128,753 + EX31_RS08175 0.39 +0.6 128,753 + EX31_RS08175 0.39 +0.2 128,753 + EX31_RS08175 0.39 -0.0 128,753 + EX31_RS08175 0.39 +0.1 128,753 + EX31_RS08175 0.39 -0.1 128,753 + EX31_RS08175 0.39 +0.4 128,753 + EX31_RS08175 0.39 -0.1 128,753 + EX31_RS08175 0.39 +0.5 128,753 + EX31_RS08175 0.39 +1.1 128,753 + EX31_RS08175 0.39 +0.1 128,753 + EX31_RS08175 0.39 +0.0 128,753 + EX31_RS08175 0.39 +0.6 128,753 + EX31_RS08175 0.39 +1.0 128,753 + EX31_RS08175 0.39 +0.7 128,753 + EX31_RS08175 0.39 -0.3 128,753 + EX31_RS08175 0.39 -0.4 128,753 + EX31_RS08175 0.39 -0.2 128,753 + EX31_RS08175 0.39 +0.5 128,753 + EX31_RS08175 0.39 -0.0 128,753 + EX31_RS08175 0.39 +0.5 128,753 + EX31_RS08175 0.39 -0.1 128,753 + EX31_RS08175 0.39 +0.7 128,753 + EX31_RS08175 0.39 -0.6 128,753 + EX31_RS08175 0.39 +0.6 128,754 - EX31_RS08175 0.39 +0.8 128,754 - EX31_RS08175 0.39 +0.2 128,754 - EX31_RS08175 0.39 +0.8 128,754 - EX31_RS08175 0.39 +0.2 128,754 - EX31_RS08175 0.39 -0.0 128,754 - EX31_RS08175 0.39 +0.5 128,754 - EX31_RS08175 0.39 -0.5 128,754 - EX31_RS08175 0.39 -0.3 128,754 - EX31_RS08175 0.39 +0.3 128,754 - EX31_RS08175 0.39 -0.2 128,754 - EX31_RS08175 0.39 -1.0 128,754 - EX31_RS08175 0.39 +0.4 128,754 - EX31_RS08175 0.39 +1.9 128,754 - EX31_RS08175 0.39 +0.5 128,754 - EX31_RS08175 0.39 -0.3 128,791 + EX31_RS08175 0.45 +0.3 128,791 + EX31_RS08175 0.45 +0.3 128,791 + EX31_RS08175 0.45 +0.5 128,796 - EX31_RS08175 0.45 -0.1 128,796 - EX31_RS08175 0.45 +0.4 128,796 - EX31_RS08175 0.45 +0.6 128,969 + EX31_RS08175 0.73 -0.8 128,969 + EX31_RS08175 0.73 +0.2 128,969 + EX31_RS08175 0.73 -0.7 128,970 - EX31_RS08175 0.73 +0.9 128,970 - EX31_RS08175 0.73 +0.6 128,970 - EX31_RS08175 0.73 -0.2 128,970 - EX31_RS08175 0.73 +0.6 129,049 + EX31_RS08175 0.86 +0.1 129,049 + EX31_RS08175 0.86 +0.2 129,050 - EX31_RS08175 0.86 -0.2 129,050 - EX31_RS08175 0.86 -0.8 129,091 + +0.7 129,092 - -1.0 129,092 - +0.4 129,127 + +0.4 129,127 + +0.6 129,127 + +0.4 129,128 - -0.6 129,137 + +0.6 129,137 + +0.6 129,137 + +0.1 129,138 - +0.4 129,138 - +0.1 129,138 - -0.7 129,144 + -0.1 129,164 + -0.1 129,164 + +1.1 129,266 + -0.1 129,266 + -0.7 129,266 + -0.1 129,266 + +0.1 129,266 + -0.1 129,267 - -0.9 129,267 - +0.7 129,267 - -0.3 129,267 - +0.7 129,267 - +0.4 129,267 - -0.8 129,267 - +0.0 129,267 - +0.0 129,267 - -0.1 129,267 - -0.6 129,267 - +1.6 129,274 + -0.3 129,274 + -0.2 129,274 + +0.0 129,274 + -0.5 129,274 + -0.0 129,274 + -0.2 129,274 + -0.4 129,274 + -0.6 129,274 + -0.1 129,274 + -0.4 129,275 - +0.4 129,275 - +0.2 129,275 - -0.9 129,275 - +0.1 129,275 - -0.4 129,275 - +0.7 129,275 - -0.5 129,275 - -0.5 129,276 + +0.2 129,276 + +1.0 129,276 + +0.2 129,276 + -0.3 129,276 + +0.0 129,276 + -0.3 129,277 - +1.0 129,277 - +0.3 129,277 - +0.3 129,277 - +0.2 129,277 - -0.3 129,277 - +0.1 129,277 - +0.3 129,277 - +1.0 129,277 - -0.1 129,277 - +0.4 129,277 - +0.4 130,379 - +0.2 130,439 + -0.0 130,439 + +0.4 130,439 + +0.0 130,439 + -0.1 130,440 - +0.2 130,440 - -0.4 130,440 - -0.5 130,466 + -0.3 130,467 - -0.2 130,467 - +0.5 130,467 - +0.3 130,467 - +0.4 130,467 - +0.0 130,468 + -0.2 130,468 + -0.1 130,468 + -0.9 130,468 + -0.1 130,468 + +0.9 130,468 + +1.0 130,468 + -0.2 130,468 + -0.5 130,468 + -0.4 130,468 + +0.2 130,468 + -0.6 130,468 + +0.5 130,469 - -0.1 130,469 - -0.3 130,469 - +0.7 130,469 - -0.4 130,469 - +0.7 130,469 - +0.2 130,470 + +0.3 130,470 + -0.3 130,470 + +0.3 130,470 + -0.4 130,470 + +0.2 130,470 + +0.2 130,470 + +0.4 130,470 + +0.2 130,470 + -0.2 130,471 - +0.1 130,471 - -0.4 130,471 - +0.1 130,471 - -0.7 130,471 - +0.1 130,859 + +1.3 130,859 + -0.1 130,862 + -0.1 130,862 + -0.5 130,903 + -0.7 130,903 + -0.4 130,903 + +0.5 130,925 + -0.5 130,925 + -0.3 130,930 + -0.6 130,978 + -0.5 130,978 + -1.8
Or see this region's nucleotide sequence