Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03400 and EX31_RS03410 are separated by 706 nucleotides EX31_RS03410 and EX31_RS03415 are separated by 131 nucleotides
EX31_RS03400: EX31_RS03400 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 167,142 to 169,739
_RS03400
EX31_RS03410: EX31_RS03410 - type 1 fimbrial protein, at 170,446 to 171,306
_RS03410
EX31_RS03415: EX31_RS03415 - fimbrial biogenesis outer membrane usher protein, at 171,438 to 173,951
_RS03415
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.449 kb on - strand, within EX31_RS03400 at 169.449 kb on - strand, within EX31_RS03400 at 169.451 kb on - strand, within EX31_RS03400 at 169.451 kb on - strand, within EX31_RS03400 at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.556 kb on - strand at 169.556 kb on - strand at 169.603 kb on - strand at 169.714 kb on - strand at 169.735 kb on - strand at 169.768 kb on - strand at 169.768 kb on - strand at 169.768 kb on - strand at 169.768 kb on - strand at 169.857 kb on - strand at 169.879 kb on - strand at 169.928 kb on + strand at 170.034 kb on + strand at 170.034 kb on + strand at 170.034 kb on + strand at 170.034 kb on + strand at 170.035 kb on - strand at 170.035 kb on - strand at 170.035 kb on - strand at 170.035 kb on - strand at 170.070 kb on - strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.192 kb on + strand at 170.192 kb on + strand at 170.241 kb on + strand at 170.241 kb on + strand at 170.241 kb on + strand at 170.242 kb on - strand at 170.242 kb on - strand at 170.242 kb on - strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.246 kb on - strand at 170.246 kb on - strand at 170.246 kb on - strand at 170.246 kb on - strand at 170.246 kb on - strand at 170.290 kb on + strand at 170.290 kb on + strand at 170.320 kb on + strand at 170.320 kb on + strand at 170.321 kb on - strand at 170.321 kb on - strand at 170.321 kb on - strand at 170.334 kb on + strand at 170.334 kb on + strand at 170.334 kb on + strand at 170.338 kb on + strand at 170.454 kb on - strand at 170.454 kb on - strand at 170.454 kb on - strand at 170.454 kb on - strand at 170.463 kb on + strand at 170.464 kb on - strand at 170.516 kb on + strand at 170.516 kb on + strand at 170.517 kb on - strand at 170.517 kb on - strand at 170.517 kb on - strand at 170.517 kb on - strand at 170.605 kb on - strand, within EX31_RS03410 at 170.754 kb on + strand, within EX31_RS03410 at 170.754 kb on + strand, within EX31_RS03410 at 170.754 kb on + strand, within EX31_RS03410 at 170.754 kb on + strand, within EX31_RS03410 at 170.754 kb on + strand, within EX31_RS03410 at 170.755 kb on - strand, within EX31_RS03410 at 170.755 kb on - strand, within EX31_RS03410 at 170.755 kb on - strand, within EX31_RS03410 at 170.755 kb on - strand, within EX31_RS03410 at 170.755 kb on - strand, within EX31_RS03410 at 170.755 kb on - strand, within EX31_RS03410 at 170.755 kb on - strand, within EX31_RS03410 at 170.832 kb on + strand, within EX31_RS03410 at 170.832 kb on + strand, within EX31_RS03410 at 170.841 kb on + strand, within EX31_RS03410 at 170.842 kb on - strand, within EX31_RS03410 at 170.842 kb on - strand, within EX31_RS03410 at 170.842 kb on - strand, within EX31_RS03410 at 170.877 kb on + strand, within EX31_RS03410 at 170.878 kb on - strand, within EX31_RS03410 at 170.878 kb on - strand, within EX31_RS03410 at 170.878 kb on - strand, within EX31_RS03410 at 170.886 kb on + strand, within EX31_RS03410 at 170.886 kb on + strand, within EX31_RS03410 at 170.886 kb on + strand, within EX31_RS03410 at 170.886 kb on + strand, within EX31_RS03410 at 170.887 kb on - strand, within EX31_RS03410 at 170.887 kb on - strand, within EX31_RS03410 at 170.887 kb on - strand, within EX31_RS03410 at 170.888 kb on + strand, within EX31_RS03410 at 170.888 kb on + strand, within EX31_RS03410 at 170.889 kb on - strand, within EX31_RS03410 at 170.889 kb on - strand, within EX31_RS03410 at 170.889 kb on - strand, within EX31_RS03410 at 170.889 kb on - strand, within EX31_RS03410 at 170.889 kb on - strand, within EX31_RS03410 at 170.889 kb on - strand, within EX31_RS03410 at 170.933 kb on + strand, within EX31_RS03410 at 170.933 kb on + strand, within EX31_RS03410 at 171.011 kb on - strand, within EX31_RS03410 at 171.022 kb on + strand, within EX31_RS03410 at 171.022 kb on + strand, within EX31_RS03410 at 171.022 kb on + strand, within EX31_RS03410 at 171.022 kb on + strand, within EX31_RS03410 at 171.022 kb on + strand, within EX31_RS03410 at 171.022 kb on + strand, within EX31_RS03410 at 171.022 kb on + strand, within EX31_RS03410 at 171.022 kb on + strand, within EX31_RS03410 at 171.023 kb on - strand, within EX31_RS03410 at 171.023 kb on - strand, within EX31_RS03410 at 171.023 kb on - strand, within EX31_RS03410 at 171.023 kb on - strand, within EX31_RS03410 at 171.072 kb on + strand, within EX31_RS03410 at 171.117 kb on + strand, within EX31_RS03410 at 171.117 kb on + strand, within EX31_RS03410 at 171.155 kb on + strand, within EX31_RS03410 at 171.155 kb on + strand, within EX31_RS03410 at 171.197 kb on + strand, within EX31_RS03410 at 171.197 kb on + strand, within EX31_RS03410 at 171.197 kb on + strand, within EX31_RS03410 at 171.197 kb on + strand, within EX31_RS03410 at 171.252 kb on + strand at 171.270 kb on + strand at 171.271 kb on - strand at 171.271 kb on - strand at 171.332 kb on - strand at 171.332 kb on - strand at 171.332 kb on - strand at 171.352 kb on + strand at 171.363 kb on + strand at 171.380 kb on - strand at 171.380 kb on - strand at 171.380 kb on - strand at 171.415 kb on + strand at 171.415 kb on + strand at 171.415 kb on + strand at 171.416 kb on - strand at 171.416 kb on - strand at 171.416 kb on - strand at 171.429 kb on + strand at 171.430 kb on - strand at 171.431 kb on + strand at 171.431 kb on + strand at 171.431 kb on + strand at 171.431 kb on + strand at 171.431 kb on + strand at 171.431 kb on + strand at 171.431 kb on + strand at 171.431 kb on + strand at 171.432 kb on - strand at 171.432 kb on - strand at 171.432 kb on - strand at 171.432 kb on - strand at 171.432 kb on - strand at 171.447 kb on + strand at 171.447 kb on + strand at 171.447 kb on + strand at 171.447 kb on + strand at 171.448 kb on - strand at 171.448 kb on - strand at 171.448 kb on - strand at 171.490 kb on - strand at 171.490 kb on - strand at 171.494 kb on + strand at 171.494 kb on + strand at 171.495 kb on - strand at 171.495 kb on - strand at 171.565 kb on + strand at 171.565 kb on + strand at 171.565 kb on + strand at 171.565 kb on + strand at 171.565 kb on + strand at 171.566 kb on - strand at 171.566 kb on - strand at 171.566 kb on - strand at 171.566 kb on - strand at 171.566 kb on - strand at 171.655 kb on + strand at 171.655 kb on + strand at 171.655 kb on + strand at 171.655 kb on + strand at 171.655 kb on + strand at 171.655 kb on + strand at 171.655 kb on + strand at 171.655 kb on + strand at 171.655 kb on + strand at 171.655 kb on + strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.656 kb on - strand at 171.659 kb on + strand at 171.659 kb on + strand at 171.659 kb on + strand at 171.659 kb on + strand at 171.660 kb on - strand at 171.660 kb on - strand at 171.660 kb on - strand at 171.673 kb on - strand at 171.673 kb on - strand at 171.808 kb on + strand, within EX31_RS03415 at 171.808 kb on + strand, within EX31_RS03415 at 171.808 kb on + strand, within EX31_RS03415 at 171.808 kb on + strand, within EX31_RS03415 at 171.808 kb on + strand, within EX31_RS03415 at 171.809 kb on - strand, within EX31_RS03415 at 171.820 kb on + strand, within EX31_RS03415 at 171.820 kb on + strand, within EX31_RS03415 at 171.820 kb on + strand, within EX31_RS03415 at 171.821 kb on - strand, within EX31_RS03415 at 171.821 kb on - strand, within EX31_RS03415 at 171.821 kb on - strand, within EX31_RS03415 at 171.821 kb on - strand, within EX31_RS03415 at 171.851 kb on + strand, within EX31_RS03415 at 171.851 kb on + strand, within EX31_RS03415 at 171.852 kb on - strand, within EX31_RS03415 at 171.854 kb on - strand, within EX31_RS03415 at 171.854 kb on - strand, within EX31_RS03415 at 171.866 kb on + strand, within EX31_RS03415 at 171.867 kb on - strand, within EX31_RS03415 at 171.991 kb on + strand, within EX31_RS03415 at 171.991 kb on + strand, within EX31_RS03415 at 171.991 kb on + strand, within EX31_RS03415 at 171.991 kb on + strand, within EX31_RS03415 at 171.992 kb on - strand, within EX31_RS03415 at 172.018 kb on + strand, within EX31_RS03415 at 172.018 kb on + strand, within EX31_RS03415 at 172.018 kb on + strand, within EX31_RS03415 at 172.018 kb on + strand, within EX31_RS03415 at 172.019 kb on - strand, within EX31_RS03415 at 172.019 kb on - strand, within EX31_RS03415 at 172.019 kb on - strand, within EX31_RS03415 at 172.025 kb on - strand, within EX31_RS03415 at 172.057 kb on + strand, within EX31_RS03415 at 172.058 kb on - strand, within EX31_RS03415 at 172.120 kb on + strand, within EX31_RS03415 at 172.121 kb on - strand, within EX31_RS03415 at 172.121 kb on - strand, within EX31_RS03415 at 172.133 kb on + strand, within EX31_RS03415 at 172.253 kb on + strand, within EX31_RS03415 at 172.254 kb on - strand, within EX31_RS03415 at 172.269 kb on - strand, within EX31_RS03415 at 172.285 kb on + strand, within EX31_RS03415 at 172.286 kb on - strand, within EX31_RS03415 at 172.286 kb on - strand, within EX31_RS03415 at 172.289 kb on + strand, within EX31_RS03415 at 172.289 kb on + strand, within EX31_RS03415 at 172.289 kb on + strand, within EX31_RS03415 at 172.289 kb on + strand, within EX31_RS03415 at 172.289 kb on + strand, within EX31_RS03415 at 172.290 kb on - strand, within EX31_RS03415 at 172.290 kb on - strand, within EX31_RS03415 at 172.290 kb on - strand, within EX31_RS03415 at 172.290 kb on - strand, within EX31_RS03415 at 172.290 kb on - strand, within EX31_RS03415
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 169,449 - EX31_RS03400 0.89 -1.3 169,449 - EX31_RS03400 0.89 -0.8 169,451 - EX31_RS03400 0.89 -2.5 169,451 - EX31_RS03400 0.89 +0.1 169,512 - -2.0 169,512 - -2.0 169,512 - -2.1 169,512 - -1.9 169,512 - -2.0 169,512 - -1.3 169,512 - +0.7 169,556 - -1.7 169,556 - -0.9 169,603 - -0.9 169,714 - -0.6 169,735 - -1.9 169,768 - -0.4 169,768 - -1.3 169,768 - -0.4 169,768 - -0.9 169,857 - -1.5 169,879 - +0.5 169,928 + -0.5 170,034 + -2.1 170,034 + +0.0 170,034 + -0.8 170,034 + +0.2 170,035 - -0.4 170,035 - -0.0 170,035 - +0.0 170,035 - -0.6 170,070 - +0.6 170,190 + +0.4 170,190 + +0.3 170,190 + +0.5 170,190 + -0.1 170,190 + +0.0 170,190 + -0.6 170,190 + +0.1 170,190 + -0.8 170,190 + +0.4 170,191 - -1.0 170,191 - -1.1 170,191 - +0.7 170,191 - +0.5 170,191 - +0.1 170,191 - -1.1 170,191 - -1.7 170,191 - -1.1 170,191 - -0.5 170,191 - -0.3 170,191 - -0.1 170,191 - -0.0 170,191 - -0.8 170,191 - -0.3 170,192 + -0.9 170,192 + +0.3 170,241 + +0.2 170,241 + -0.3 170,241 + -1.0 170,242 - +0.2 170,242 - +0.6 170,242 - +0.2 170,245 + -0.0 170,245 + -0.0 170,245 + +0.9 170,245 + -0.0 170,245 + +0.6 170,245 + -0.2 170,245 + -0.9 170,245 + +0.3 170,246 - -0.4 170,246 - -1.7 170,246 - +0.1 170,246 - +0.5 170,246 - -0.1 170,290 + -0.9 170,290 + -0.2 170,320 + +0.4 170,320 + -2.2 170,321 - -0.5 170,321 - -0.6 170,321 - +0.3 170,334 + +0.0 170,334 + +0.1 170,334 + +0.4 170,338 + +0.4 170,454 - -0.5 170,454 - +0.2 170,454 - -0.0 170,454 - -0.3 170,463 + +0.1 170,464 - -0.3 170,516 + -0.0 170,516 + -0.8 170,517 - -0.0 170,517 - +0.8 170,517 - -0.5 170,517 - +0.3 170,605 - EX31_RS03410 0.18 +0.1 170,754 + EX31_RS03410 0.36 +0.4 170,754 + EX31_RS03410 0.36 +0.6 170,754 + EX31_RS03410 0.36 +0.3 170,754 + EX31_RS03410 0.36 +0.1 170,754 + EX31_RS03410 0.36 +0.0 170,755 - EX31_RS03410 0.36 -0.2 170,755 - EX31_RS03410 0.36 +0.4 170,755 - EX31_RS03410 0.36 +0.1 170,755 - EX31_RS03410 0.36 +1.6 170,755 - EX31_RS03410 0.36 -0.9 170,755 - EX31_RS03410 0.36 -0.4 170,755 - EX31_RS03410 0.36 +0.5 170,832 + EX31_RS03410 0.45 +0.6 170,832 + EX31_RS03410 0.45 +0.1 170,841 + EX31_RS03410 0.46 +0.7 170,842 - EX31_RS03410 0.46 +1.0 170,842 - EX31_RS03410 0.46 -0.4 170,842 - EX31_RS03410 0.46 +0.3 170,877 + EX31_RS03410 0.50 -1.1 170,878 - EX31_RS03410 0.50 -0.5 170,878 - EX31_RS03410 0.50 -0.2 170,878 - EX31_RS03410 0.50 +0.1 170,886 + EX31_RS03410 0.51 +0.3 170,886 + EX31_RS03410 0.51 +0.8 170,886 + EX31_RS03410 0.51 +0.2 170,886 + EX31_RS03410 0.51 +0.1 170,887 - EX31_RS03410 0.51 +0.3 170,887 - EX31_RS03410 0.51 +0.1 170,887 - EX31_RS03410 0.51 +0.3 170,888 + EX31_RS03410 0.51 +0.4 170,888 + EX31_RS03410 0.51 -2.6 170,889 - EX31_RS03410 0.51 +0.6 170,889 - EX31_RS03410 0.51 +1.3 170,889 - EX31_RS03410 0.51 -0.8 170,889 - EX31_RS03410 0.51 -0.3 170,889 - EX31_RS03410 0.51 -0.6 170,889 - EX31_RS03410 0.51 +0.2 170,933 + EX31_RS03410 0.57 +0.4 170,933 + EX31_RS03410 0.57 +0.4 171,011 - EX31_RS03410 0.66 -0.5 171,022 + EX31_RS03410 0.67 -0.7 171,022 + EX31_RS03410 0.67 -0.4 171,022 + EX31_RS03410 0.67 -0.5 171,022 + EX31_RS03410 0.67 -0.2 171,022 + EX31_RS03410 0.67 -0.5 171,022 + EX31_RS03410 0.67 -0.7 171,022 + EX31_RS03410 0.67 +0.1 171,022 + EX31_RS03410 0.67 +0.3 171,023 - EX31_RS03410 0.67 -0.3 171,023 - EX31_RS03410 0.67 -0.0 171,023 - EX31_RS03410 0.67 -0.1 171,023 - EX31_RS03410 0.67 -0.6 171,072 + EX31_RS03410 0.73 -0.3 171,117 + EX31_RS03410 0.78 +0.2 171,117 + EX31_RS03410 0.78 +0.1 171,155 + EX31_RS03410 0.82 -0.6 171,155 + EX31_RS03410 0.82 +0.1 171,197 + EX31_RS03410 0.87 +0.4 171,197 + EX31_RS03410 0.87 -0.4 171,197 + EX31_RS03410 0.87 -0.1 171,197 + EX31_RS03410 0.87 -1.2 171,252 + -0.3 171,270 + -0.8 171,271 - -0.5 171,271 - -0.2 171,332 - -0.5 171,332 - -1.3 171,332 - +0.5 171,352 + -1.0 171,363 + +0.7 171,380 - +0.0 171,380 - -0.3 171,380 - +0.7 171,415 + -0.1 171,415 + +0.1 171,415 + +0.7 171,416 - -0.2 171,416 - -0.5 171,416 - +0.5 171,429 + -0.9 171,430 - +0.1 171,431 + -0.8 171,431 + -0.5 171,431 + -0.2 171,431 + -0.0 171,431 + +0.2 171,431 + +0.2 171,431 + -0.3 171,431 + -0.4 171,432 - -0.5 171,432 - -0.5 171,432 - +0.9 171,432 - -0.9 171,432 - -0.2 171,447 + -0.2 171,447 + -1.1 171,447 + -0.4 171,447 + +1.9 171,448 - +0.2 171,448 - -0.6 171,448 - -0.5 171,490 - +0.8 171,490 - +0.3 171,494 + +0.1 171,494 + +0.8 171,495 - +0.3 171,495 - +0.6 171,565 + -0.4 171,565 + -0.3 171,565 + -0.4 171,565 + -0.3 171,565 + -0.3 171,566 - -0.3 171,566 - -0.3 171,566 - +0.7 171,566 - +0.1 171,566 - -0.7 171,655 + -0.0 171,655 + +0.1 171,655 + -1.1 171,655 + +0.1 171,655 + +0.1 171,655 + -0.5 171,655 + +0.3 171,655 + +0.6 171,655 + -0.2 171,655 + +0.8 171,656 - -0.7 171,656 - -0.2 171,656 - -0.4 171,656 - +0.1 171,656 - -0.4 171,656 - +1.1 171,656 - -0.4 171,656 - +1.2 171,656 - +0.3 171,656 - +0.7 171,656 - +0.3 171,659 + -0.8 171,659 + -0.4 171,659 + -0.4 171,659 + -0.7 171,660 - +0.2 171,660 - +0.5 171,660 - -1.7 171,673 - +0.4 171,673 - +0.3 171,808 + EX31_RS03415 0.15 -0.1 171,808 + EX31_RS03415 0.15 -1.5 171,808 + EX31_RS03415 0.15 +0.8 171,808 + EX31_RS03415 0.15 -1.0 171,808 + EX31_RS03415 0.15 +2.6 171,809 - EX31_RS03415 0.15 -0.1 171,820 + EX31_RS03415 0.15 -0.5 171,820 + EX31_RS03415 0.15 -0.3 171,820 + EX31_RS03415 0.15 -0.7 171,821 - EX31_RS03415 0.15 +0.6 171,821 - EX31_RS03415 0.15 -0.6 171,821 - EX31_RS03415 0.15 +0.2 171,821 - EX31_RS03415 0.15 -1.2 171,851 + EX31_RS03415 0.16 -0.1 171,851 + EX31_RS03415 0.16 -0.0 171,852 - EX31_RS03415 0.16 -1.9 171,854 - EX31_RS03415 0.17 -0.8 171,854 - EX31_RS03415 0.17 +0.6 171,866 + EX31_RS03415 0.17 -0.6 171,867 - EX31_RS03415 0.17 +0.7 171,991 + EX31_RS03415 0.22 +0.3 171,991 + EX31_RS03415 0.22 -0.1 171,991 + EX31_RS03415 0.22 +0.7 171,991 + EX31_RS03415 0.22 +0.7 171,992 - EX31_RS03415 0.22 +0.2 172,018 + EX31_RS03415 0.23 -0.1 172,018 + EX31_RS03415 0.23 +0.2 172,018 + EX31_RS03415 0.23 -0.3 172,018 + EX31_RS03415 0.23 -0.4 172,019 - EX31_RS03415 0.23 +0.5 172,019 - EX31_RS03415 0.23 -0.1 172,019 - EX31_RS03415 0.23 -0.1 172,025 - EX31_RS03415 0.23 -0.7 172,057 + EX31_RS03415 0.25 -0.0 172,058 - EX31_RS03415 0.25 -0.6 172,120 + EX31_RS03415 0.27 -0.7 172,121 - EX31_RS03415 0.27 +0.1 172,121 - EX31_RS03415 0.27 -1.2 172,133 + EX31_RS03415 0.28 -0.0 172,253 + EX31_RS03415 0.32 -0.1 172,254 - EX31_RS03415 0.32 +0.1 172,269 - EX31_RS03415 0.33 +0.5 172,285 + EX31_RS03415 0.34 -0.4 172,286 - EX31_RS03415 0.34 -0.1 172,286 - EX31_RS03415 0.34 +0.4 172,289 + EX31_RS03415 0.34 -1.5 172,289 + EX31_RS03415 0.34 +0.1 172,289 + EX31_RS03415 0.34 -0.3 172,289 + EX31_RS03415 0.34 +0.1 172,289 + EX31_RS03415 0.34 +0.1 172,290 - EX31_RS03415 0.34 -0.7 172,290 - EX31_RS03415 0.34 +0.4 172,290 - EX31_RS03415 0.34 -0.8 172,290 - EX31_RS03415 0.34 -0.1 172,290 - EX31_RS03415 0.34 -0.3
Or see this region's nucleotide sequence