Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01835 and EX31_RS01840 are separated by 405 nucleotides EX31_RS01840 and EX31_RS01845 are separated by 72 nucleotides
EX31_RS01835: EX31_RS01835 - site-specific integrase, at 394,564 to 395,688
_RS01835
EX31_RS01840: EX31_RS01840 - PAS domain-containing protein, at 396,094 to 397,641
_RS01840
EX31_RS01845: EX31_RS01845 - HAMP domain-containing protein, at 397,714 to 399,261
_RS01845
Position (kb) 396
397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 395.275 kb on - strand, within EX31_RS01835 at 395.278 kb on + strand, within EX31_RS01835 at 395.278 kb on + strand, within EX31_RS01835 at 395.279 kb on - strand, within EX31_RS01835 at 395.279 kb on - strand, within EX31_RS01835 at 395.298 kb on - strand, within EX31_RS01835 at 395.298 kb on - strand, within EX31_RS01835 at 395.332 kb on - strand, within EX31_RS01835 at 395.332 kb on - strand, within EX31_RS01835 at 395.332 kb on - strand, within EX31_RS01835 at 395.332 kb on - strand, within EX31_RS01835 at 395.383 kb on + strand, within EX31_RS01835 at 395.389 kb on - strand, within EX31_RS01835 at 395.389 kb on - strand, within EX31_RS01835 at 395.527 kb on - strand, within EX31_RS01835 at 395.613 kb on - strand at 395.663 kb on - strand at 395.683 kb on - strand at 395.683 kb on - strand at 395.683 kb on - strand at 395.724 kb on + strand at 395.724 kb on + strand at 395.726 kb on + strand at 395.726 kb on + strand at 395.726 kb on + strand at 395.727 kb on - strand at 395.727 kb on - strand at 395.745 kb on - strand at 395.771 kb on + strand at 395.772 kb on - strand at 395.774 kb on + strand at 395.798 kb on + strand at 395.799 kb on - strand at 395.821 kb on - strand at 395.834 kb on - strand at 395.853 kb on - strand at 395.853 kb on - strand at 395.884 kb on + strand at 395.884 kb on + strand at 395.886 kb on + strand at 395.887 kb on - strand at 395.887 kb on - strand at 395.893 kb on + strand at 395.906 kb on + strand at 395.906 kb on + strand at 395.907 kb on - strand at 395.917 kb on + strand at 395.917 kb on + strand at 395.917 kb on + strand at 395.917 kb on + strand at 395.918 kb on - strand at 395.918 kb on - strand at 395.918 kb on - strand at 395.918 kb on - strand at 395.918 kb on - strand at 395.918 kb on - strand at 395.918 kb on - strand at 395.992 kb on - strand at 396.043 kb on + strand at 396.093 kb on + strand at 396.180 kb on + strand at 396.183 kb on + strand at 396.184 kb on - strand at 396.184 kb on - strand at 396.184 kb on - strand at 396.187 kb on + strand at 396.205 kb on - strand at 396.205 kb on - strand at 396.205 kb on - strand at 396.207 kb on - strand at 396.235 kb on - strand at 396.235 kb on - strand at 396.235 kb on - strand at 396.298 kb on - strand, within EX31_RS01840 at 396.306 kb on + strand, within EX31_RS01840 at 396.311 kb on + strand, within EX31_RS01840 at 396.311 kb on + strand, within EX31_RS01840 at 396.311 kb on + strand, within EX31_RS01840 at 396.311 kb on + strand, within EX31_RS01840 at 396.620 kb on + strand, within EX31_RS01840 at 396.840 kb on + strand, within EX31_RS01840 at 396.973 kb on - strand, within EX31_RS01840 at 396.973 kb on - strand, within EX31_RS01840 at 397.140 kb on + strand, within EX31_RS01840 at 397.141 kb on - strand, within EX31_RS01840 at 397.374 kb on - strand, within EX31_RS01840 at 397.646 kb on - strand at 397.646 kb on - strand at 397.652 kb on + strand at 397.715 kb on + strand at 397.903 kb on - strand, within EX31_RS01845 at 397.913 kb on - strand, within EX31_RS01845 at 397.917 kb on + strand, within EX31_RS01845 at 398.185 kb on - strand, within EX31_RS01845 at 398.217 kb on + strand, within EX31_RS01845 at 398.320 kb on - strand, within EX31_RS01845 at 398.412 kb on + strand, within EX31_RS01845 at 398.413 kb on - strand, within EX31_RS01845 at 398.413 kb on - strand, within EX31_RS01845 at 398.415 kb on + strand, within EX31_RS01845 at 398.415 kb on + strand, within EX31_RS01845 at 398.452 kb on - strand, within EX31_RS01845 at 398.477 kb on - strand, within EX31_RS01845 at 398.478 kb on + strand, within EX31_RS01845 at 398.479 kb on - strand, within EX31_RS01845 at 398.502 kb on + strand, within EX31_RS01845 at 398.502 kb on + strand, within EX31_RS01845 at 398.502 kb on + strand, within EX31_RS01845 at 398.503 kb on - strand, within EX31_RS01845
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 395,275 - EX31_RS01835 0.63 -0.1 395,278 + EX31_RS01835 0.63 +0.1 395,278 + EX31_RS01835 0.63 +0.6 395,279 - EX31_RS01835 0.64 -0.1 395,279 - EX31_RS01835 0.64 -0.4 395,298 - EX31_RS01835 0.65 -0.3 395,298 - EX31_RS01835 0.65 +0.4 395,332 - EX31_RS01835 0.68 -0.1 395,332 - EX31_RS01835 0.68 -0.3 395,332 - EX31_RS01835 0.68 +0.2 395,332 - EX31_RS01835 0.68 +0.4 395,383 + EX31_RS01835 0.73 +0.5 395,389 - EX31_RS01835 0.73 +1.0 395,389 - EX31_RS01835 0.73 +0.4 395,527 - EX31_RS01835 0.86 -0.2 395,613 - +0.0 395,663 - +0.5 395,683 - -0.7 395,683 - -0.3 395,683 - -2.5 395,724 + -0.7 395,724 + -0.0 395,726 + +0.1 395,726 + +0.5 395,726 + -0.5 395,727 - +0.1 395,727 - +1.0 395,745 - +0.4 395,771 + +0.6 395,772 - +1.4 395,774 + -0.6 395,798 + -0.0 395,799 - +0.4 395,821 - +1.4 395,834 - +0.2 395,853 - +0.8 395,853 - -0.8 395,884 + +0.2 395,884 + -1.3 395,886 + -0.8 395,887 - +0.5 395,887 - +0.5 395,893 + +0.4 395,906 + -0.3 395,906 + -1.5 395,907 - +1.1 395,917 + +0.9 395,917 + +0.6 395,917 + +0.9 395,917 + +0.5 395,918 - -0.7 395,918 - +1.1 395,918 - -0.2 395,918 - +0.6 395,918 - +0.5 395,918 - -0.5 395,918 - -0.1 395,992 - -0.2 396,043 + -0.4 396,093 + -1.6 396,180 + -1.1 396,183 + -0.8 396,184 - -0.1 396,184 - -0.3 396,184 - +0.0 396,187 + +0.2 396,205 - -1.0 396,205 - +0.3 396,205 - -0.6 396,207 - -0.6 396,235 - -0.8 396,235 - -1.4 396,235 - -2.9 396,298 - EX31_RS01840 0.13 -0.0 396,306 + EX31_RS01840 0.14 +0.2 396,311 + EX31_RS01840 0.14 +0.5 396,311 + EX31_RS01840 0.14 +0.5 396,311 + EX31_RS01840 0.14 -1.7 396,311 + EX31_RS01840 0.14 -2.1 396,620 + EX31_RS01840 0.34 +0.1 396,840 + EX31_RS01840 0.48 +0.6 396,973 - EX31_RS01840 0.57 +0.1 396,973 - EX31_RS01840 0.57 +0.6 397,140 + EX31_RS01840 0.68 -1.1 397,141 - EX31_RS01840 0.68 -1.1 397,374 - EX31_RS01840 0.83 -0.6 397,646 - -0.0 397,646 - -0.3 397,652 + +0.1 397,715 + -0.6 397,903 - EX31_RS01845 0.12 -0.8 397,913 - EX31_RS01845 0.13 -1.1 397,917 + EX31_RS01845 0.13 -1.9 398,185 - EX31_RS01845 0.30 -2.1 398,217 + EX31_RS01845 0.32 -2.0 398,320 - EX31_RS01845 0.39 +0.1 398,412 + EX31_RS01845 0.45 +1.5 398,413 - EX31_RS01845 0.45 +1.0 398,413 - EX31_RS01845 0.45 -1.0 398,415 + EX31_RS01845 0.45 +0.5 398,415 + EX31_RS01845 0.45 -1.2 398,452 - EX31_RS01845 0.48 -0.4 398,477 - EX31_RS01845 0.49 -0.9 398,478 + EX31_RS01845 0.49 -0.2 398,479 - EX31_RS01845 0.49 -0.2 398,502 + EX31_RS01845 0.51 -1.9 398,502 + EX31_RS01845 0.51 -0.6 398,502 + EX31_RS01845 0.51 +1.3 398,503 - EX31_RS01845 0.51 +0.5
Or see this region's nucleotide sequence