Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24715 and EX31_RS24720 are separated by 207 nucleotides EX31_RS24720 and EX31_RS24725 overlap by 4 nucleotides
EX31_RS24715: EX31_RS24715 - L-serine ammonia-lyase, at 712,709 to 714,073
_RS24715
EX31_RS24720: EX31_RS24720 - CoA pyrophosphatase, at 714,281 to 714,883
_RS24720
EX31_RS24725: EX31_RS24725 - aminodeoxychorismate synthase component 1, at 714,880 to 716,256
_RS24725
Position (kb) 714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 713.327 kb on - strand, within EX31_RS24715 at 713.470 kb on + strand, within EX31_RS24715 at 713.470 kb on + strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.569 kb on - strand, within EX31_RS24715 at 713.646 kb on + strand, within EX31_RS24715 at 713.646 kb on + strand, within EX31_RS24715 at 713.646 kb on + strand, within EX31_RS24715 at 713.647 kb on - strand, within EX31_RS24715 at 713.647 kb on - strand, within EX31_RS24715 at 713.647 kb on - strand, within EX31_RS24715 at 713.659 kb on - strand, within EX31_RS24715 at 713.659 kb on - strand, within EX31_RS24715 at 713.738 kb on - strand, within EX31_RS24715 at 713.815 kb on + strand, within EX31_RS24715 at 713.816 kb on - strand, within EX31_RS24715 at 713.870 kb on + strand, within EX31_RS24715 at 713.871 kb on - strand, within EX31_RS24715 at 713.902 kb on + strand, within EX31_RS24715 at 713.903 kb on - strand, within EX31_RS24715 at 713.903 kb on - strand, within EX31_RS24715 at 714.081 kb on - strand at 714.092 kb on - strand at 714.092 kb on - strand at 714.092 kb on - strand at 714.126 kb on + strand at 714.126 kb on + strand at 714.126 kb on + strand at 714.127 kb on - strand at 714.187 kb on + strand at 714.187 kb on + strand at 714.187 kb on + strand at 714.187 kb on + strand at 714.187 kb on + strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.189 kb on + strand at 714.189 kb on + strand at 714.189 kb on + strand at 714.189 kb on + strand at 714.190 kb on - strand at 714.190 kb on - strand at 714.190 kb on - strand at 714.190 kb on - strand at 714.195 kb on - strand at 714.195 kb on - strand at 714.195 kb on - strand at 714.235 kb on + strand at 714.242 kb on - strand at 714.242 kb on - strand at 714.264 kb on + strand at 714.270 kb on - strand at 714.363 kb on + strand, within EX31_RS24720 at 714.363 kb on + strand, within EX31_RS24720 at 714.485 kb on + strand, within EX31_RS24720 at 714.485 kb on + strand, within EX31_RS24720 at 714.486 kb on - strand, within EX31_RS24720 at 714.486 kb on - strand, within EX31_RS24720 at 714.486 kb on - strand, within EX31_RS24720 at 714.563 kb on + strand, within EX31_RS24720 at 714.563 kb on + strand, within EX31_RS24720 at 714.563 kb on + strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.625 kb on + strand, within EX31_RS24720 at 714.626 kb on - strand, within EX31_RS24720 at 714.686 kb on - strand, within EX31_RS24720 at 714.855 kb on - strand at 714.855 kb on - strand at 714.890 kb on - strand at 714.890 kb on - strand at 714.942 kb on - strand at 715.064 kb on + strand, within EX31_RS24725 at 715.065 kb on - strand, within EX31_RS24725 at 715.065 kb on - strand, within EX31_RS24725 at 715.065 kb on - strand, within EX31_RS24725 at 715.334 kb on - strand, within EX31_RS24725 at 715.334 kb on - strand, within EX31_RS24725 at 715.642 kb on - strand, within EX31_RS24725 at 715.642 kb on - strand, within EX31_RS24725 at 715.644 kb on - strand, within EX31_RS24725 at 715.644 kb on - strand, within EX31_RS24725 at 715.644 kb on - strand, within EX31_RS24725 at 715.644 kb on - strand, within EX31_RS24725 at 715.672 kb on + strand, within EX31_RS24725 at 715.690 kb on - strand, within EX31_RS24725 at 715.690 kb on - strand, within EX31_RS24725 at 715.711 kb on + strand, within EX31_RS24725 at 715.712 kb on - strand, within EX31_RS24725 at 715.712 kb on - strand, within EX31_RS24725 at 715.762 kb on + strand, within EX31_RS24725 at 715.763 kb on - strand, within EX31_RS24725 at 715.807 kb on + strand, within EX31_RS24725 at 715.808 kb on - strand, within EX31_RS24725 at 715.808 kb on - strand, within EX31_RS24725 at 715.838 kb on + strand, within EX31_RS24725 at 715.839 kb on - strand, within EX31_RS24725 at 715.839 kb on - strand, within EX31_RS24725 at 715.839 kb on - strand, within EX31_RS24725
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 713,327 - EX31_RS24715 0.45 +0.2 713,470 + EX31_RS24715 0.56 -0.9 713,470 + EX31_RS24715 0.56 -0.4 713,471 - EX31_RS24715 0.56 -0.1 713,471 - EX31_RS24715 0.56 +0.8 713,471 - EX31_RS24715 0.56 -0.4 713,471 - EX31_RS24715 0.56 +0.5 713,471 - EX31_RS24715 0.56 +0.3 713,471 - EX31_RS24715 0.56 +1.2 713,471 - EX31_RS24715 0.56 -0.4 713,471 - EX31_RS24715 0.56 -0.0 713,471 - EX31_RS24715 0.56 +1.0 713,569 - EX31_RS24715 0.63 -0.1 713,646 + EX31_RS24715 0.69 -3.0 713,646 + EX31_RS24715 0.69 -1.4 713,646 + EX31_RS24715 0.69 -0.6 713,647 - EX31_RS24715 0.69 -0.1 713,647 - EX31_RS24715 0.69 -0.6 713,647 - EX31_RS24715 0.69 +0.0 713,659 - EX31_RS24715 0.70 -0.2 713,659 - EX31_RS24715 0.70 +0.6 713,738 - EX31_RS24715 0.75 +0.7 713,815 + EX31_RS24715 0.81 -0.8 713,816 - EX31_RS24715 0.81 +0.2 713,870 + EX31_RS24715 0.85 +0.4 713,871 - EX31_RS24715 0.85 +0.2 713,902 + EX31_RS24715 0.87 +0.4 713,903 - EX31_RS24715 0.87 -0.2 713,903 - EX31_RS24715 0.87 +0.5 714,081 - -0.7 714,092 - +0.5 714,092 - +0.7 714,092 - -0.2 714,126 + +1.0 714,126 + -0.7 714,126 + +0.2 714,127 - -1.0 714,187 + +0.4 714,187 + -0.2 714,187 + -1.7 714,187 + -0.9 714,187 + +0.6 714,188 - +0.2 714,188 - +0.5 714,188 - -1.7 714,188 - -0.4 714,188 - +0.4 714,188 - -1.4 714,188 - +0.4 714,189 + +0.1 714,189 + -0.9 714,189 + -0.1 714,189 + -0.5 714,190 - -2.0 714,190 - +0.9 714,190 - +0.2 714,190 - +0.2 714,195 - +0.5 714,195 - +0.8 714,195 - -0.2 714,235 + -0.3 714,242 - +0.2 714,242 - +0.3 714,264 + -0.2 714,270 - +0.3 714,363 + EX31_RS24720 0.14 +1.2 714,363 + EX31_RS24720 0.14 -0.2 714,485 + EX31_RS24720 0.34 -0.7 714,485 + EX31_RS24720 0.34 -0.6 714,486 - EX31_RS24720 0.34 -0.5 714,486 - EX31_RS24720 0.34 -1.5 714,486 - EX31_RS24720 0.34 -0.9 714,563 + EX31_RS24720 0.47 +2.3 714,563 + EX31_RS24720 0.47 -0.7 714,563 + EX31_RS24720 0.47 -0.4 714,564 - EX31_RS24720 0.47 -0.2 714,564 - EX31_RS24720 0.47 +1.7 714,564 - EX31_RS24720 0.47 +0.3 714,564 - EX31_RS24720 0.47 -0.6 714,564 - EX31_RS24720 0.47 -0.3 714,564 - EX31_RS24720 0.47 -0.9 714,564 - EX31_RS24720 0.47 +1.1 714,565 + EX31_RS24720 0.47 -0.3 714,565 + EX31_RS24720 0.47 -1.6 714,565 + EX31_RS24720 0.47 -0.1 714,565 + EX31_RS24720 0.47 -1.7 714,565 + EX31_RS24720 0.47 -0.1 714,565 + EX31_RS24720 0.47 +0.4 714,565 + EX31_RS24720 0.47 +0.2 714,565 + EX31_RS24720 0.47 +0.3 714,566 - EX31_RS24720 0.47 -0.3 714,566 - EX31_RS24720 0.47 -0.3 714,566 - EX31_RS24720 0.47 +1.0 714,566 - EX31_RS24720 0.47 -0.7 714,566 - EX31_RS24720 0.47 +0.1 714,566 - EX31_RS24720 0.47 +0.2 714,566 - EX31_RS24720 0.47 -0.7 714,566 - EX31_RS24720 0.47 -0.5 714,566 - EX31_RS24720 0.47 -0.2 714,566 - EX31_RS24720 0.47 +0.2 714,566 - EX31_RS24720 0.47 +0.9 714,625 + EX31_RS24720 0.57 +0.7 714,626 - EX31_RS24720 0.57 +0.6 714,686 - EX31_RS24720 0.67 +0.6 714,855 - +0.1 714,855 - -0.1 714,890 - +0.4 714,890 - +0.1 714,942 - -2.6 715,064 + EX31_RS24725 0.13 -0.1 715,065 - EX31_RS24725 0.13 +0.1 715,065 - EX31_RS24725 0.13 -1.1 715,065 - EX31_RS24725 0.13 -1.4 715,334 - EX31_RS24725 0.33 -1.8 715,334 - EX31_RS24725 0.33 -1.6 715,642 - EX31_RS24725 0.55 -0.8 715,642 - EX31_RS24725 0.55 -0.3 715,644 - EX31_RS24725 0.55 -1.3 715,644 - EX31_RS24725 0.55 -1.3 715,644 - EX31_RS24725 0.55 -1.4 715,644 - EX31_RS24725 0.55 -0.8 715,672 + EX31_RS24725 0.58 -0.0 715,690 - EX31_RS24725 0.59 -0.6 715,690 - EX31_RS24725 0.59 -1.0 715,711 + EX31_RS24725 0.60 -0.4 715,712 - EX31_RS24725 0.60 -1.5 715,712 - EX31_RS24725 0.60 +0.3 715,762 + EX31_RS24725 0.64 -0.7 715,763 - EX31_RS24725 0.64 -0.2 715,807 + EX31_RS24725 0.67 -0.6 715,808 - EX31_RS24725 0.67 -0.7 715,808 - EX31_RS24725 0.67 -0.3 715,838 + EX31_RS24725 0.70 -0.1 715,839 - EX31_RS24725 0.70 -1.0 715,839 - EX31_RS24725 0.70 +0.3 715,839 - EX31_RS24725 0.70 +1.9
Or see this region's nucleotide sequence