Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24710 and EX31_RS24715 are separated by 443 nucleotides EX31_RS24715 and EX31_RS24720 are separated by 207 nucleotides EX31_RS24720 and EX31_RS24725 overlap by 4 nucleotides
EX31_RS24710: EX31_RS24710 - EAL domain-containing protein, at 710,673 to 712,265
_RS24710
EX31_RS24715: EX31_RS24715 - L-serine ammonia-lyase, at 712,709 to 714,073
_RS24715
EX31_RS24720: EX31_RS24720 - CoA pyrophosphatase, at 714,281 to 714,883
_RS24720
EX31_RS24725: EX31_RS24725 - aminodeoxychorismate synthase component 1, at 714,880 to 716,256
_RS24725
Position (kb) 712
713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 711.765 kb on - strand, within EX31_RS24710 at 711.767 kb on - strand, within EX31_RS24710 at 711.767 kb on - strand, within EX31_RS24710 at 711.786 kb on - strand, within EX31_RS24710 at 711.786 kb on - strand, within EX31_RS24710 at 711.979 kb on - strand, within EX31_RS24710 at 712.159 kb on + strand at 712.163 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.194 kb on + strand at 712.195 kb on - strand at 712.195 kb on - strand at 712.228 kb on + strand at 712.229 kb on - strand at 712.234 kb on + strand at 712.234 kb on + strand at 712.235 kb on - strand at 712.271 kb on + strand at 712.272 kb on - strand at 712.290 kb on + strand at 712.291 kb on - strand at 712.312 kb on - strand at 712.334 kb on + strand at 712.335 kb on - strand at 712.353 kb on - strand at 712.353 kb on - strand at 712.354 kb on + strand at 712.362 kb on - strand at 712.362 kb on - strand at 712.362 kb on - strand at 712.362 kb on - strand at 712.367 kb on + strand at 712.367 kb on + strand at 712.368 kb on - strand at 712.368 kb on - strand at 712.368 kb on - strand at 712.368 kb on - strand at 712.368 kb on - strand at 712.409 kb on + strand at 712.410 kb on - strand at 712.486 kb on - strand at 712.495 kb on + strand at 712.544 kb on - strand at 712.545 kb on + strand at 712.546 kb on - strand at 712.561 kb on - strand at 712.567 kb on - strand at 712.608 kb on - strand at 712.608 kb on - strand at 712.635 kb on - strand at 712.635 kb on - strand at 712.772 kb on - strand at 712.772 kb on - strand at 712.772 kb on - strand at 712.788 kb on + strand at 712.808 kb on - strand at 712.862 kb on - strand, within EX31_RS24715 at 712.888 kb on + strand, within EX31_RS24715 at 712.889 kb on - strand, within EX31_RS24715 at 712.980 kb on - strand, within EX31_RS24715 at 713.097 kb on + strand, within EX31_RS24715 at 713.131 kb on - strand, within EX31_RS24715 at 713.139 kb on + strand, within EX31_RS24715 at 713.139 kb on + strand, within EX31_RS24715 at 713.140 kb on - strand, within EX31_RS24715 at 713.140 kb on - strand, within EX31_RS24715 at 713.176 kb on - strand, within EX31_RS24715 at 713.176 kb on - strand, within EX31_RS24715 at 713.179 kb on - strand, within EX31_RS24715 at 713.279 kb on - strand, within EX31_RS24715 at 713.279 kb on - strand, within EX31_RS24715 at 713.279 kb on - strand, within EX31_RS24715 at 713.327 kb on - strand, within EX31_RS24715 at 713.470 kb on + strand, within EX31_RS24715 at 713.470 kb on + strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.471 kb on - strand, within EX31_RS24715 at 713.569 kb on - strand, within EX31_RS24715 at 713.646 kb on + strand, within EX31_RS24715 at 713.646 kb on + strand, within EX31_RS24715 at 713.646 kb on + strand, within EX31_RS24715 at 713.647 kb on - strand, within EX31_RS24715 at 713.647 kb on - strand, within EX31_RS24715 at 713.647 kb on - strand, within EX31_RS24715 at 713.659 kb on - strand, within EX31_RS24715 at 713.659 kb on - strand, within EX31_RS24715 at 713.738 kb on - strand, within EX31_RS24715 at 713.815 kb on + strand, within EX31_RS24715 at 713.816 kb on - strand, within EX31_RS24715 at 713.870 kb on + strand, within EX31_RS24715 at 713.871 kb on - strand, within EX31_RS24715 at 713.902 kb on + strand, within EX31_RS24715 at 713.903 kb on - strand, within EX31_RS24715 at 713.903 kb on - strand, within EX31_RS24715 at 714.081 kb on - strand at 714.092 kb on - strand at 714.092 kb on - strand at 714.092 kb on - strand at 714.126 kb on + strand at 714.126 kb on + strand at 714.126 kb on + strand at 714.127 kb on - strand at 714.187 kb on + strand at 714.187 kb on + strand at 714.187 kb on + strand at 714.187 kb on + strand at 714.187 kb on + strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.188 kb on - strand at 714.189 kb on + strand at 714.189 kb on + strand at 714.189 kb on + strand at 714.189 kb on + strand at 714.190 kb on - strand at 714.190 kb on - strand at 714.190 kb on - strand at 714.190 kb on - strand at 714.195 kb on - strand at 714.195 kb on - strand at 714.195 kb on - strand at 714.235 kb on + strand at 714.242 kb on - strand at 714.242 kb on - strand at 714.264 kb on + strand at 714.270 kb on - strand at 714.363 kb on + strand, within EX31_RS24720 at 714.363 kb on + strand, within EX31_RS24720 at 714.485 kb on + strand, within EX31_RS24720 at 714.485 kb on + strand, within EX31_RS24720 at 714.486 kb on - strand, within EX31_RS24720 at 714.486 kb on - strand, within EX31_RS24720 at 714.486 kb on - strand, within EX31_RS24720 at 714.563 kb on + strand, within EX31_RS24720 at 714.563 kb on + strand, within EX31_RS24720 at 714.563 kb on + strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.564 kb on - strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.565 kb on + strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.566 kb on - strand, within EX31_RS24720 at 714.625 kb on + strand, within EX31_RS24720 at 714.626 kb on - strand, within EX31_RS24720 at 714.686 kb on - strand, within EX31_RS24720 at 714.855 kb on - strand at 714.855 kb on - strand at 714.890 kb on - strand at 714.890 kb on - strand at 714.942 kb on - strand at 715.064 kb on + strand, within EX31_RS24725 at 715.065 kb on - strand, within EX31_RS24725 at 715.065 kb on - strand, within EX31_RS24725 at 715.065 kb on - strand, within EX31_RS24725
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 711,765 - EX31_RS24710 0.69 -0.1 711,767 - EX31_RS24710 0.69 +0.8 711,767 - EX31_RS24710 0.69 -0.7 711,786 - EX31_RS24710 0.70 -0.2 711,786 - EX31_RS24710 0.70 -0.3 711,979 - EX31_RS24710 0.82 -0.3 712,159 + -2.1 712,163 + +0.7 712,190 + -0.9 712,190 + -0.8 712,190 + -1.3 712,190 + +0.9 712,190 + -0.3 712,190 + -0.9 712,191 - -0.3 712,191 - -0.4 712,191 - -0.1 712,191 - +0.7 712,191 - -2.4 712,191 - -0.5 712,191 - -0.5 712,194 + -0.5 712,195 - +0.8 712,195 - -0.5 712,228 + +0.1 712,229 - -0.6 712,234 + +1.0 712,234 + +0.5 712,235 - -0.2 712,271 + -1.1 712,272 - -0.5 712,290 + -2.2 712,291 - +0.2 712,312 - +1.1 712,334 + -1.1 712,335 - +0.5 712,353 - -0.2 712,353 - +0.1 712,354 + -0.2 712,362 - +0.9 712,362 - -1.2 712,362 - -0.6 712,362 - +0.3 712,367 + +0.6 712,367 + -0.8 712,368 - +1.4 712,368 - -0.8 712,368 - +0.5 712,368 - +0.2 712,368 - -0.7 712,409 + +0.0 712,410 - +0.1 712,486 - +0.6 712,495 + +0.3 712,544 - +0.2 712,545 + -0.0 712,546 - +0.1 712,561 - +0.5 712,567 - -0.6 712,608 - -0.5 712,608 - +0.8 712,635 - +1.4 712,635 - -0.8 712,772 - -0.1 712,772 - +0.3 712,772 - +0.1 712,788 + -0.7 712,808 - +0.9 712,862 - EX31_RS24715 0.11 +0.1 712,888 + EX31_RS24715 0.13 -1.2 712,889 - EX31_RS24715 0.13 -0.1 712,980 - EX31_RS24715 0.20 +0.3 713,097 + EX31_RS24715 0.28 +0.6 713,131 - EX31_RS24715 0.31 -0.5 713,139 + EX31_RS24715 0.32 +1.0 713,139 + EX31_RS24715 0.32 +0.7 713,140 - EX31_RS24715 0.32 -0.1 713,140 - EX31_RS24715 0.32 +0.8 713,176 - EX31_RS24715 0.34 -0.5 713,176 - EX31_RS24715 0.34 +0.3 713,179 - EX31_RS24715 0.34 -1.5 713,279 - EX31_RS24715 0.42 +0.0 713,279 - EX31_RS24715 0.42 +1.2 713,279 - EX31_RS24715 0.42 -1.2 713,327 - EX31_RS24715 0.45 +0.2 713,470 + EX31_RS24715 0.56 -0.9 713,470 + EX31_RS24715 0.56 -0.4 713,471 - EX31_RS24715 0.56 -0.1 713,471 - EX31_RS24715 0.56 +0.8 713,471 - EX31_RS24715 0.56 -0.4 713,471 - EX31_RS24715 0.56 +0.5 713,471 - EX31_RS24715 0.56 +0.3 713,471 - EX31_RS24715 0.56 +1.2 713,471 - EX31_RS24715 0.56 -0.4 713,471 - EX31_RS24715 0.56 -0.0 713,471 - EX31_RS24715 0.56 +1.0 713,569 - EX31_RS24715 0.63 -0.1 713,646 + EX31_RS24715 0.69 -3.0 713,646 + EX31_RS24715 0.69 -1.4 713,646 + EX31_RS24715 0.69 -0.6 713,647 - EX31_RS24715 0.69 -0.1 713,647 - EX31_RS24715 0.69 -0.6 713,647 - EX31_RS24715 0.69 +0.0 713,659 - EX31_RS24715 0.70 -0.2 713,659 - EX31_RS24715 0.70 +0.6 713,738 - EX31_RS24715 0.75 +0.7 713,815 + EX31_RS24715 0.81 -0.8 713,816 - EX31_RS24715 0.81 +0.2 713,870 + EX31_RS24715 0.85 +0.4 713,871 - EX31_RS24715 0.85 +0.2 713,902 + EX31_RS24715 0.87 +0.4 713,903 - EX31_RS24715 0.87 -0.2 713,903 - EX31_RS24715 0.87 +0.5 714,081 - -0.7 714,092 - +0.5 714,092 - +0.7 714,092 - -0.2 714,126 + +1.0 714,126 + -0.7 714,126 + +0.2 714,127 - -1.0 714,187 + +0.4 714,187 + -0.2 714,187 + -1.7 714,187 + -0.9 714,187 + +0.6 714,188 - +0.2 714,188 - +0.5 714,188 - -1.7 714,188 - -0.4 714,188 - +0.4 714,188 - -1.4 714,188 - +0.4 714,189 + +0.1 714,189 + -0.9 714,189 + -0.1 714,189 + -0.5 714,190 - -2.0 714,190 - +0.9 714,190 - +0.2 714,190 - +0.2 714,195 - +0.5 714,195 - +0.8 714,195 - -0.2 714,235 + -0.3 714,242 - +0.2 714,242 - +0.3 714,264 + -0.2 714,270 - +0.3 714,363 + EX31_RS24720 0.14 +1.2 714,363 + EX31_RS24720 0.14 -0.2 714,485 + EX31_RS24720 0.34 -0.7 714,485 + EX31_RS24720 0.34 -0.6 714,486 - EX31_RS24720 0.34 -0.5 714,486 - EX31_RS24720 0.34 -1.5 714,486 - EX31_RS24720 0.34 -0.9 714,563 + EX31_RS24720 0.47 +2.3 714,563 + EX31_RS24720 0.47 -0.7 714,563 + EX31_RS24720 0.47 -0.4 714,564 - EX31_RS24720 0.47 -0.2 714,564 - EX31_RS24720 0.47 +1.7 714,564 - EX31_RS24720 0.47 +0.3 714,564 - EX31_RS24720 0.47 -0.6 714,564 - EX31_RS24720 0.47 -0.3 714,564 - EX31_RS24720 0.47 -0.9 714,564 - EX31_RS24720 0.47 +1.1 714,565 + EX31_RS24720 0.47 -0.3 714,565 + EX31_RS24720 0.47 -1.6 714,565 + EX31_RS24720 0.47 -0.1 714,565 + EX31_RS24720 0.47 -1.7 714,565 + EX31_RS24720 0.47 -0.1 714,565 + EX31_RS24720 0.47 +0.4 714,565 + EX31_RS24720 0.47 +0.2 714,565 + EX31_RS24720 0.47 +0.3 714,566 - EX31_RS24720 0.47 -0.3 714,566 - EX31_RS24720 0.47 -0.3 714,566 - EX31_RS24720 0.47 +1.0 714,566 - EX31_RS24720 0.47 -0.7 714,566 - EX31_RS24720 0.47 +0.1 714,566 - EX31_RS24720 0.47 +0.2 714,566 - EX31_RS24720 0.47 -0.7 714,566 - EX31_RS24720 0.47 -0.5 714,566 - EX31_RS24720 0.47 -0.2 714,566 - EX31_RS24720 0.47 +0.2 714,566 - EX31_RS24720 0.47 +0.9 714,625 + EX31_RS24720 0.57 +0.7 714,626 - EX31_RS24720 0.57 +0.6 714,686 - EX31_RS24720 0.67 +0.6 714,855 - +0.1 714,855 - -0.1 714,890 - +0.4 714,890 - +0.1 714,942 - -2.6 715,064 + EX31_RS24725 0.13 -0.1 715,065 - EX31_RS24725 0.13 +0.1 715,065 - EX31_RS24725 0.13 -1.1 715,065 - EX31_RS24725 0.13 -1.4
Or see this region's nucleotide sequence