Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17095 and EX31_RS17100 are separated by 417 nucleotides EX31_RS17100 and EX31_RS24985 are separated by 97 nucleotides
EX31_RS17095: EX31_RS17095 - hypothetical protein, at 10,954 to 12,228
_RS17095
EX31_RS17100: EX31_RS17100 - colicin immunity protein Cui, at 12,646 to 13,191
_RS17100
EX31_RS24985: EX31_RS24985 - hypothetical protein, at 13,289 to 14,623
_RS24985
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.696 kb on + strand, within EX31_RS17095 at 11.696 kb on + strand, within EX31_RS17095 at 11.696 kb on + strand, within EX31_RS17095 at 11.696 kb on + strand, within EX31_RS17095 at 11.697 kb on - strand, within EX31_RS17095 at 11.697 kb on - strand, within EX31_RS17095 at 11.697 kb on - strand, within EX31_RS17095 at 11.697 kb on - strand, within EX31_RS17095 at 11.697 kb on - strand, within EX31_RS17095 at 11.697 kb on - strand, within EX31_RS17095 at 11.780 kb on + strand, within EX31_RS17095 at 11.780 kb on + strand, within EX31_RS17095 at 11.780 kb on + strand, within EX31_RS17095 at 11.780 kb on + strand, within EX31_RS17095 at 11.780 kb on + strand, within EX31_RS17095 at 11.781 kb on - strand, within EX31_RS17095 at 11.781 kb on - strand, within EX31_RS17095 at 11.821 kb on + strand, within EX31_RS17095 at 11.821 kb on + strand, within EX31_RS17095 at 11.867 kb on + strand, within EX31_RS17095 at 11.867 kb on + strand, within EX31_RS17095 at 11.867 kb on + strand, within EX31_RS17095 at 11.867 kb on + strand, within EX31_RS17095 at 11.867 kb on + strand, within EX31_RS17095 at 11.868 kb on - strand, within EX31_RS17095 at 11.868 kb on - strand, within EX31_RS17095 at 11.881 kb on + strand, within EX31_RS17095 at 11.904 kb on + strand, within EX31_RS17095 at 11.905 kb on - strand, within EX31_RS17095 at 11.905 kb on - strand, within EX31_RS17095 at 11.922 kb on - strand, within EX31_RS17095 at 12.000 kb on + strand, within EX31_RS17095 at 12.001 kb on - strand, within EX31_RS17095 at 12.001 kb on - strand, within EX31_RS17095 at 12.108 kb on + strand at 12.134 kb on - strand at 12.134 kb on - strand at 12.134 kb on - strand at 12.149 kb on - strand at 12.174 kb on + strand at 12.198 kb on - strand at 12.257 kb on + strand at 12.257 kb on + strand at 12.257 kb on + strand at 12.257 kb on + strand at 12.257 kb on + strand at 12.257 kb on + strand at 12.257 kb on + strand at 12.258 kb on - strand at 12.258 kb on - strand at 12.258 kb on - strand at 12.258 kb on - strand at 12.258 kb on - strand at 12.258 kb on - strand at 12.259 kb on + strand at 12.259 kb on + strand at 12.260 kb on - strand at 12.266 kb on + strand at 12.301 kb on + strand at 12.301 kb on + strand at 12.302 kb on - strand at 12.302 kb on - strand at 12.315 kb on - strand at 12.347 kb on + strand at 12.347 kb on + strand at 12.347 kb on + strand at 12.347 kb on + strand at 12.348 kb on - strand at 12.348 kb on - strand at 12.353 kb on + strand at 12.353 kb on + strand at 12.371 kb on + strand at 12.371 kb on + strand at 12.372 kb on - strand at 12.417 kb on - strand at 12.432 kb on + strand at 12.433 kb on - strand at 12.433 kb on - strand at 12.473 kb on - strand at 12.483 kb on + strand at 12.483 kb on + strand at 12.535 kb on + strand at 12.535 kb on + strand at 12.535 kb on + strand at 12.535 kb on + strand at 12.535 kb on + strand at 12.536 kb on - strand at 12.536 kb on - strand at 12.536 kb on - strand at 12.536 kb on - strand at 12.536 kb on - strand at 12.536 kb on - strand at 12.537 kb on + strand at 12.537 kb on + strand at 12.537 kb on + strand at 12.537 kb on + strand at 12.537 kb on + strand at 12.538 kb on - strand at 12.538 kb on - strand at 12.538 kb on - strand at 12.538 kb on - strand at 12.538 kb on - strand at 12.538 kb on - strand at 12.538 kb on - strand at 12.578 kb on - strand at 12.604 kb on + strand at 12.651 kb on + strand at 12.681 kb on + strand at 12.681 kb on + strand at 12.737 kb on + strand, within EX31_RS17100 at 12.738 kb on - strand, within EX31_RS17100 at 12.775 kb on - strand, within EX31_RS17100 at 12.913 kb on - strand, within EX31_RS17100 at 12.985 kb on + strand, within EX31_RS17100 at 13.018 kb on - strand, within EX31_RS17100 at 13.096 kb on - strand, within EX31_RS17100 at 13.100 kb on + strand, within EX31_RS17100 at 13.277 kb on + strand at 13.315 kb on + strand at 13.318 kb on + strand at 13.364 kb on + strand at 13.365 kb on - strand at 13.415 kb on - strand at 13.421 kb on + strand at 13.421 kb on + strand at 13.433 kb on + strand, within EX31_RS24985 at 13.433 kb on + strand, within EX31_RS24985 at 13.433 kb on + strand, within EX31_RS24985 at 13.433 kb on + strand, within EX31_RS24985 at 13.433 kb on + strand, within EX31_RS24985 at 13.433 kb on + strand, within EX31_RS24985 at 13.433 kb on + strand, within EX31_RS24985 at 13.433 kb on + strand, within EX31_RS24985 at 13.434 kb on - strand, within EX31_RS24985 at 13.434 kb on - strand, within EX31_RS24985 at 13.434 kb on - strand, within EX31_RS24985 at 13.434 kb on - strand, within EX31_RS24985 at 13.437 kb on + strand, within EX31_RS24985 at 13.437 kb on + strand, within EX31_RS24985 at 13.437 kb on + strand, within EX31_RS24985 at 13.437 kb on + strand, within EX31_RS24985 at 13.437 kb on + strand, within EX31_RS24985 at 13.437 kb on + strand, within EX31_RS24985 at 13.438 kb on - strand, within EX31_RS24985 at 13.438 kb on - strand, within EX31_RS24985 at 13.438 kb on - strand, within EX31_RS24985 at 13.438 kb on - strand, within EX31_RS24985 at 13.478 kb on + strand, within EX31_RS24985 at 13.500 kb on - strand, within EX31_RS24985 at 13.520 kb on - strand, within EX31_RS24985 at 13.616 kb on - strand, within EX31_RS24985 at 13.616 kb on - strand, within EX31_RS24985 at 13.616 kb on - strand, within EX31_RS24985 at 13.617 kb on + strand, within EX31_RS24985 at 13.617 kb on + strand, within EX31_RS24985 at 13.618 kb on - strand, within EX31_RS24985 at 13.618 kb on - strand, within EX31_RS24985 at 13.618 kb on - strand, within EX31_RS24985 at 13.618 kb on - strand, within EX31_RS24985 at 13.636 kb on + strand, within EX31_RS24985 at 13.636 kb on + strand, within EX31_RS24985 at 13.637 kb on - strand, within EX31_RS24985 at 13.652 kb on - strand, within EX31_RS24985 at 13.741 kb on + strand, within EX31_RS24985 at 13.741 kb on + strand, within EX31_RS24985 at 13.742 kb on - strand, within EX31_RS24985 at 13.742 kb on - strand, within EX31_RS24985 at 13.742 kb on - strand, within EX31_RS24985 at 13.742 kb on - strand, within EX31_RS24985 at 13.745 kb on + strand, within EX31_RS24985 at 13.745 kb on + strand, within EX31_RS24985 at 13.745 kb on + strand, within EX31_RS24985 at 13.746 kb on - strand, within EX31_RS24985 at 13.801 kb on + strand, within EX31_RS24985 at 13.802 kb on - strand, within EX31_RS24985 at 13.846 kb on + strand, within EX31_RS24985 at 13.847 kb on - strand, within EX31_RS24985 at 13.847 kb on - strand, within EX31_RS24985 at 14.003 kb on + strand, within EX31_RS24985 at 14.020 kb on - strand, within EX31_RS24985 at 14.020 kb on - strand, within EX31_RS24985 at 14.020 kb on - strand, within EX31_RS24985 at 14.023 kb on + strand, within EX31_RS24985 at 14.024 kb on - strand, within EX31_RS24985 at 14.058 kb on + strand, within EX31_RS24985 at 14.089 kb on + strand, within EX31_RS24985 at 14.118 kb on - strand, within EX31_RS24985
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 11,696 + EX31_RS17095 0.58 +0.0 11,696 + EX31_RS17095 0.58 -0.3 11,696 + EX31_RS17095 0.58 +2.2 11,696 + EX31_RS17095 0.58 -2.1 11,697 - EX31_RS17095 0.58 +0.2 11,697 - EX31_RS17095 0.58 -0.0 11,697 - EX31_RS17095 0.58 -0.1 11,697 - EX31_RS17095 0.58 +0.2 11,697 - EX31_RS17095 0.58 +0.2 11,697 - EX31_RS17095 0.58 +0.0 11,780 + EX31_RS17095 0.65 -0.5 11,780 + EX31_RS17095 0.65 +1.4 11,780 + EX31_RS17095 0.65 -0.1 11,780 + EX31_RS17095 0.65 -0.2 11,780 + EX31_RS17095 0.65 +0.1 11,781 - EX31_RS17095 0.65 +0.5 11,781 - EX31_RS17095 0.65 -0.2 11,821 + EX31_RS17095 0.68 -0.3 11,821 + EX31_RS17095 0.68 -0.1 11,867 + EX31_RS17095 0.72 +0.3 11,867 + EX31_RS17095 0.72 +0.2 11,867 + EX31_RS17095 0.72 +1.3 11,867 + EX31_RS17095 0.72 -2.2 11,867 + EX31_RS17095 0.72 +0.9 11,868 - EX31_RS17095 0.72 -0.3 11,868 - EX31_RS17095 0.72 +0.6 11,881 + EX31_RS17095 0.73 -1.3 11,904 + EX31_RS17095 0.75 -0.3 11,905 - EX31_RS17095 0.75 +0.1 11,905 - EX31_RS17095 0.75 +0.8 11,922 - EX31_RS17095 0.76 -1.1 12,000 + EX31_RS17095 0.82 -0.1 12,001 - EX31_RS17095 0.82 +0.6 12,001 - EX31_RS17095 0.82 +0.7 12,108 + -0.5 12,134 - -0.3 12,134 - -0.9 12,134 - -0.2 12,149 - -0.5 12,174 + -0.4 12,198 - -0.2 12,257 + +0.0 12,257 + +0.0 12,257 + +0.4 12,257 + -0.1 12,257 + +0.1 12,257 + +0.2 12,257 + -0.2 12,258 - +0.1 12,258 - -1.3 12,258 - -1.1 12,258 - +0.4 12,258 - -0.1 12,258 - -0.3 12,259 + -0.5 12,259 + -0.1 12,260 - -0.8 12,266 + +0.2 12,301 + +0.1 12,301 + -0.4 12,302 - -0.1 12,302 - +1.6 12,315 - -0.0 12,347 + +0.8 12,347 + +0.4 12,347 + -0.4 12,347 + -0.3 12,348 - -1.2 12,348 - +0.0 12,353 + -1.1 12,353 + +0.6 12,371 + +0.2 12,371 + -0.6 12,372 - -1.5 12,417 - -0.1 12,432 + +0.6 12,433 - +0.6 12,433 - -0.1 12,473 - -1.1 12,483 + -0.8 12,483 + -0.8 12,535 + +0.3 12,535 + +0.0 12,535 + -0.1 12,535 + +1.1 12,535 + +1.1 12,536 - +0.6 12,536 - -0.3 12,536 - -0.3 12,536 - -0.2 12,536 - -0.1 12,536 - +0.4 12,537 + -0.1 12,537 + -0.9 12,537 + -0.0 12,537 + -0.4 12,537 + -1.0 12,538 - -0.4 12,538 - -1.1 12,538 - -0.7 12,538 - +1.3 12,538 - -0.9 12,538 - -0.9 12,538 - +0.3 12,578 - -0.6 12,604 + +0.9 12,651 + -0.1 12,681 + -0.2 12,681 + -2.0 12,737 + EX31_RS17100 0.17 -1.4 12,738 - EX31_RS17100 0.17 -0.8 12,775 - EX31_RS17100 0.24 +1.1 12,913 - EX31_RS17100 0.49 -0.7 12,985 + EX31_RS17100 0.62 -1.4 13,018 - EX31_RS17100 0.68 -0.9 13,096 - EX31_RS17100 0.82 +0.2 13,100 + EX31_RS17100 0.83 -0.3 13,277 + -0.3 13,315 + -0.5 13,318 + -0.1 13,364 + -1.5 13,365 - +0.4 13,415 - +0.2 13,421 + +0.7 13,421 + -1.0 13,433 + EX31_RS24985 0.11 -0.6 13,433 + EX31_RS24985 0.11 -0.1 13,433 + EX31_RS24985 0.11 -0.3 13,433 + EX31_RS24985 0.11 -1.1 13,433 + EX31_RS24985 0.11 +0.0 13,433 + EX31_RS24985 0.11 -1.5 13,433 + EX31_RS24985 0.11 -0.9 13,433 + EX31_RS24985 0.11 -1.5 13,434 - EX31_RS24985 0.11 -1.9 13,434 - EX31_RS24985 0.11 +0.4 13,434 - EX31_RS24985 0.11 -1.7 13,434 - EX31_RS24985 0.11 -1.6 13,437 + EX31_RS24985 0.11 -0.5 13,437 + EX31_RS24985 0.11 +0.3 13,437 + EX31_RS24985 0.11 +0.3 13,437 + EX31_RS24985 0.11 +0.1 13,437 + EX31_RS24985 0.11 -0.4 13,437 + EX31_RS24985 0.11 +1.3 13,438 - EX31_RS24985 0.11 +0.3 13,438 - EX31_RS24985 0.11 -0.8 13,438 - EX31_RS24985 0.11 +0.4 13,438 - EX31_RS24985 0.11 -1.0 13,478 + EX31_RS24985 0.14 +0.4 13,500 - EX31_RS24985 0.16 +0.0 13,520 - EX31_RS24985 0.17 +0.5 13,616 - EX31_RS24985 0.24 +2.0 13,616 - EX31_RS24985 0.24 -0.4 13,616 - EX31_RS24985 0.24 +0.6 13,617 + EX31_RS24985 0.25 -1.1 13,617 + EX31_RS24985 0.25 -0.6 13,618 - EX31_RS24985 0.25 +0.2 13,618 - EX31_RS24985 0.25 -0.8 13,618 - EX31_RS24985 0.25 -0.2 13,618 - EX31_RS24985 0.25 +0.7 13,636 + EX31_RS24985 0.26 +0.7 13,636 + EX31_RS24985 0.26 -0.9 13,637 - EX31_RS24985 0.26 -0.1 13,652 - EX31_RS24985 0.27 +0.4 13,741 + EX31_RS24985 0.34 -1.7 13,741 + EX31_RS24985 0.34 -0.4 13,742 - EX31_RS24985 0.34 -1.9 13,742 - EX31_RS24985 0.34 -0.3 13,742 - EX31_RS24985 0.34 -0.0 13,742 - EX31_RS24985 0.34 +0.3 13,745 + EX31_RS24985 0.34 +0.6 13,745 + EX31_RS24985 0.34 +0.9 13,745 + EX31_RS24985 0.34 -0.6 13,746 - EX31_RS24985 0.34 +0.6 13,801 + EX31_RS24985 0.38 +0.4 13,802 - EX31_RS24985 0.38 +0.5 13,846 + EX31_RS24985 0.42 -0.7 13,847 - EX31_RS24985 0.42 +1.1 13,847 - EX31_RS24985 0.42 -0.3 14,003 + EX31_RS24985 0.53 -1.7 14,020 - EX31_RS24985 0.55 -0.9 14,020 - EX31_RS24985 0.55 -0.3 14,020 - EX31_RS24985 0.55 -0.4 14,023 + EX31_RS24985 0.55 -1.5 14,024 - EX31_RS24985 0.55 -0.6 14,058 + EX31_RS24985 0.58 +0.5 14,089 + EX31_RS24985 0.60 -1.0 14,118 - EX31_RS24985 0.62 -0.3
Or see this region's nucleotide sequence