Strain Fitness in Rahnella sp. WP5 around EX31_RS14295

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14285 and EX31_RS14290 are separated by 16 nucleotidesEX31_RS14290 and EX31_RS14295 are separated by 158 nucleotidesEX31_RS14295 and EX31_RS14300 are separated by 127 nucleotidesEX31_RS14300 and EX31_RS14305 are separated by 67 nucleotides EX31_RS14285: EX31_RS14285 - ferredoxin--NADP(+) reductase, at 39,802 to 40,548 _RS14285 EX31_RS14290: EX31_RS14290 - DUF805 domain-containing protein, at 40,565 to 40,987 _RS14290 EX31_RS14295: EX31_RS14295 - DUF1454 family protein, at 41,146 to 41,754 _RS14295 EX31_RS14300: EX31_RS14300 - triose-phosphate isomerase, at 41,882 to 42,649 _RS14300 EX31_RS14305: EX31_RS14305 - sulfate ABC transporter substrate-binding protein, at 42,717 to 43,706 _RS14305 Position (kb) 41 42Strain fitness (log2 ratio) -2 -1 0 1at 40.162 kb on + strand, within EX31_RS14285at 40.163 kb on - strand, within EX31_RS14285at 40.163 kb on - strand, within EX31_RS14285at 40.163 kb on - strand, within EX31_RS14285at 40.163 kb on - strand, within EX31_RS14285at 40.209 kb on + strand, within EX31_RS14285at 40.210 kb on - strand, within EX31_RS14285at 40.210 kb on - strand, within EX31_RS14285at 40.210 kb on - strand, within EX31_RS14285at 40.252 kb on + strand, within EX31_RS14285at 40.252 kb on + strand, within EX31_RS14285at 40.252 kb on + strand, within EX31_RS14285at 40.252 kb on + strand, within EX31_RS14285at 40.253 kb on - strand, within EX31_RS14285at 40.253 kb on - strand, within EX31_RS14285at 40.253 kb on - strand, within EX31_RS14285at 40.253 kb on - strand, within EX31_RS14285at 40.253 kb on - strand, within EX31_RS14285at 40.262 kb on + strand, within EX31_RS14285at 40.401 kb on + strand, within EX31_RS14285at 40.402 kb on - strand, within EX31_RS14285at 40.402 kb on - strand, within EX31_RS14285at 40.472 kb on + strand, within EX31_RS14285at 40.472 kb on + strand, within EX31_RS14285at 40.472 kb on + strand, within EX31_RS14285at 40.472 kb on + strand, within EX31_RS14285at 40.473 kb on - strand, within EX31_RS14285at 40.473 kb on - strand, within EX31_RS14285at 40.473 kb on - strand, within EX31_RS14285at 40.491 kb on + strandat 40.525 kb on - strandat 40.540 kb on + strandat 40.541 kb on - strandat 40.541 kb on - strandat 40.541 kb on - strandat 40.547 kb on - strandat 40.566 kb on + strandat 40.651 kb on + strand, within EX31_RS14290at 40.652 kb on - strand, within EX31_RS14290at 40.652 kb on - strand, within EX31_RS14290at 40.826 kb on + strand, within EX31_RS14290at 40.826 kb on + strand, within EX31_RS14290at 40.827 kb on - strand, within EX31_RS14290at 40.827 kb on - strand, within EX31_RS14290at 40.857 kb on + strand, within EX31_RS14290at 40.857 kb on + strand, within EX31_RS14290at 40.857 kb on + strand, within EX31_RS14290at 40.857 kb on + strand, within EX31_RS14290at 40.858 kb on - strand, within EX31_RS14290at 40.858 kb on - strand, within EX31_RS14290at 40.858 kb on - strand, within EX31_RS14290at 40.858 kb on - strand, within EX31_RS14290at 40.862 kb on - strand, within EX31_RS14290at 40.862 kb on - strand, within EX31_RS14290at 40.862 kb on - strand, within EX31_RS14290at 40.862 kb on - strand, within EX31_RS14290at 40.862 kb on - strand, within EX31_RS14290at 40.980 kb on - strandat 40.980 kb on - strandat 41.008 kb on + strandat 41.008 kb on + strandat 41.008 kb on + strandat 41.009 kb on - strandat 41.009 kb on - strandat 41.009 kb on - strandat 41.020 kb on - strandat 41.020 kb on - strandat 41.024 kb on + strandat 41.044 kb on - strandat 41.044 kb on - strandat 41.044 kb on - strandat 41.044 kb on - strandat 41.044 kb on - strandat 41.093 kb on - strandat 41.111 kb on + strandat 41.133 kb on + strandat 41.133 kb on + strandat 41.134 kb on - strandat 41.134 kb on - strandat 41.146 kb on - strandat 41.166 kb on - strandat 41.166 kb on - strandat 41.168 kb on + strandat 41.168 kb on + strandat 41.168 kb on + strandat 41.168 kb on + strandat 41.168 kb on + strandat 41.168 kb on + strandat 41.193 kb on + strandat 41.193 kb on + strandat 41.193 kb on + strandat 41.194 kb on - strandat 41.194 kb on - strandat 41.211 kb on + strand, within EX31_RS14295at 41.212 kb on - strand, within EX31_RS14295at 41.212 kb on - strand, within EX31_RS14295at 41.212 kb on - strand, within EX31_RS14295at 41.329 kb on + strand, within EX31_RS14295at 41.330 kb on - strand, within EX31_RS14295at 41.330 kb on - strand, within EX31_RS14295at 41.330 kb on - strand, within EX31_RS14295at 41.330 kb on - strand, within EX31_RS14295at 41.330 kb on - strand, within EX31_RS14295at 41.330 kb on - strand, within EX31_RS14295at 41.330 kb on - strand, within EX31_RS14295at 41.382 kb on + strand, within EX31_RS14295at 41.383 kb on - strand, within EX31_RS14295at 41.424 kb on + strand, within EX31_RS14295at 41.425 kb on - strand, within EX31_RS14295at 41.437 kb on + strand, within EX31_RS14295at 41.494 kb on + strand, within EX31_RS14295at 41.494 kb on + strand, within EX31_RS14295at 41.494 kb on + strand, within EX31_RS14295at 41.494 kb on + strand, within EX31_RS14295at 41.494 kb on + strand, within EX31_RS14295at 41.494 kb on + strand, within EX31_RS14295at 41.494 kb on + strand, within EX31_RS14295at 41.495 kb on - strand, within EX31_RS14295at 41.495 kb on - strand, within EX31_RS14295at 41.495 kb on - strand, within EX31_RS14295at 41.495 kb on - strand, within EX31_RS14295at 41.495 kb on - strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.548 kb on + strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.549 kb on - strand, within EX31_RS14295at 41.551 kb on - strand, within EX31_RS14295at 41.551 kb on - strand, within EX31_RS14295at 41.551 kb on - strand, within EX31_RS14295at 41.551 kb on - strand, within EX31_RS14295at 41.551 kb on - strand, within EX31_RS14295at 41.551 kb on - strand, within EX31_RS14295at 41.585 kb on + strand, within EX31_RS14295at 41.586 kb on - strand, within EX31_RS14295at 41.650 kb on + strand, within EX31_RS14295at 41.650 kb on + strand, within EX31_RS14295at 41.651 kb on - strand, within EX31_RS14295at 41.651 kb on - strand, within EX31_RS14295at 41.652 kb on + strand, within EX31_RS14295at 41.652 kb on + strand, within EX31_RS14295at 41.663 kb on + strand, within EX31_RS14295at 41.664 kb on - strand, within EX31_RS14295at 41.767 kb on + strandat 41.789 kb on + strandat 41.805 kb on + strandat 41.806 kb on - strandat 41.806 kb on - strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.808 kb on - strandat 41.821 kb on + strandat 41.821 kb on + strandat 41.821 kb on + strandat 41.821 kb on + strandat 41.822 kb on - strandat 41.830 kb on + strandat 41.830 kb on + strandat 41.830 kb on + strandat 41.830 kb on + strandat 42.638 kb on - strandat 42.638 kb on - strandat 42.647 kb on + strandat 42.647 kb on + strandat 42.707 kb on - strandat 42.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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40,162 + EX31_RS14285 0.48 -0.5
40,163 - EX31_RS14285 0.48 -0.3
40,163 - EX31_RS14285 0.48 -0.1
40,163 - EX31_RS14285 0.48 -0.3
40,163 - EX31_RS14285 0.48 +0.5
40,209 + EX31_RS14285 0.54 -0.1
40,210 - EX31_RS14285 0.55 -1.1
40,210 - EX31_RS14285 0.55 -0.6
40,210 - EX31_RS14285 0.55 +0.4
40,252 + EX31_RS14285 0.60 -0.0
40,252 + EX31_RS14285 0.60 +0.9
40,252 + EX31_RS14285 0.60 +0.5
40,252 + EX31_RS14285 0.60 -0.0
40,253 - EX31_RS14285 0.60 -0.5
40,253 - EX31_RS14285 0.60 +0.8
40,253 - EX31_RS14285 0.60 -0.6
40,253 - EX31_RS14285 0.60 -0.1
40,253 - EX31_RS14285 0.60 -0.4
40,262 + EX31_RS14285 0.62 -0.1
40,401 + EX31_RS14285 0.80 +0.4
40,402 - EX31_RS14285 0.80 +1.0
40,402 - EX31_RS14285 0.80 -0.3
40,472 + EX31_RS14285 0.90 -0.7
40,472 + EX31_RS14285 0.90 -0.4
40,472 + EX31_RS14285 0.90 -0.3
40,472 + EX31_RS14285 0.90 +0.8
40,473 - EX31_RS14285 0.90 +0.5
40,473 - EX31_RS14285 0.90 +0.3
40,473 - EX31_RS14285 0.90 -0.3
40,491 + +0.0
40,525 - +0.8
40,540 + -0.1
40,541 - +0.1
40,541 - -0.3
40,541 - +0.1
40,547 - -0.4
40,566 + +0.3
40,651 + EX31_RS14290 0.20 -1.4
40,652 - EX31_RS14290 0.21 +0.4
40,652 - EX31_RS14290 0.21 +0.3
40,826 + EX31_RS14290 0.62 +1.0
40,826 + EX31_RS14290 0.62 -0.4
40,827 - EX31_RS14290 0.62 +0.4
40,827 - EX31_RS14290 0.62 -2.3
40,857 + EX31_RS14290 0.69 +0.4
40,857 + EX31_RS14290 0.69 -0.1
40,857 + EX31_RS14290 0.69 -0.7
40,857 + EX31_RS14290 0.69 -0.0
40,858 - EX31_RS14290 0.69 -0.1
40,858 - EX31_RS14290 0.69 -0.2
40,858 - EX31_RS14290 0.69 -0.2
40,858 - EX31_RS14290 0.69 +0.4
40,862 - EX31_RS14290 0.70 -0.1
40,862 - EX31_RS14290 0.70 +0.2
40,862 - EX31_RS14290 0.70 +0.9
40,862 - EX31_RS14290 0.70 +0.0
40,862 - EX31_RS14290 0.70 -0.5
40,980 - +0.5
40,980 - -0.1
41,008 + +0.6
41,008 + -0.1
41,008 + +0.4
41,009 - +0.9
41,009 - -0.1
41,009 - -0.5
41,020 - -0.6
41,020 - +0.8
41,024 + +0.1
41,044 - +0.0
41,044 - +0.3
41,044 - -0.0
41,044 - -0.5
41,044 - -1.1
41,093 - +0.6
41,111 + -1.0
41,133 + +0.2
41,133 + -0.3
41,134 - +0.3
41,134 - +0.6
41,146 - +0.1
41,166 - -0.2
41,166 - +0.6
41,168 + -0.9
41,168 + +0.4
41,168 + -0.7
41,168 + -0.4
41,168 + +0.4
41,168 + +0.1
41,193 + +0.4
41,193 + -0.3
41,193 + +0.1
41,194 - +0.6
41,194 - -0.2
41,211 + EX31_RS14295 0.11 +0.3
41,212 - EX31_RS14295 0.11 +1.0
41,212 - EX31_RS14295 0.11 -0.6
41,212 - EX31_RS14295 0.11 -0.1
41,329 + EX31_RS14295 0.30 -0.1
41,330 - EX31_RS14295 0.30 +0.1
41,330 - EX31_RS14295 0.30 -0.4
41,330 - EX31_RS14295 0.30 +0.0
41,330 - EX31_RS14295 0.30 +0.4
41,330 - EX31_RS14295 0.30 -0.6
41,330 - EX31_RS14295 0.30 -0.7
41,330 - EX31_RS14295 0.30 +0.9
41,382 + EX31_RS14295 0.39 -0.1
41,383 - EX31_RS14295 0.39 +0.7
41,424 + EX31_RS14295 0.46 +0.6
41,425 - EX31_RS14295 0.46 -0.3
41,437 + EX31_RS14295 0.48 +0.4
41,494 + EX31_RS14295 0.57 +0.1
41,494 + EX31_RS14295 0.57 +0.0
41,494 + EX31_RS14295 0.57 +0.8
41,494 + EX31_RS14295 0.57 +0.4
41,494 + EX31_RS14295 0.57 +0.3
41,494 + EX31_RS14295 0.57 +0.4
41,494 + EX31_RS14295 0.57 +0.5
41,495 - EX31_RS14295 0.57 +0.5
41,495 - EX31_RS14295 0.57 +0.2
41,495 - EX31_RS14295 0.57 +0.2
41,495 - EX31_RS14295 0.57 -0.5
41,495 - EX31_RS14295 0.57 -0.6
41,548 + EX31_RS14295 0.66 +0.1
41,548 + EX31_RS14295 0.66 +0.3
41,548 + EX31_RS14295 0.66 -0.2
41,548 + EX31_RS14295 0.66 +0.2
41,548 + EX31_RS14295 0.66 +0.1
41,548 + EX31_RS14295 0.66 -0.1
41,548 + EX31_RS14295 0.66 -0.4
41,548 + EX31_RS14295 0.66 -0.3
41,548 + EX31_RS14295 0.66 +0.9
41,548 + EX31_RS14295 0.66 -0.1
41,548 + EX31_RS14295 0.66 +0.1
41,548 + EX31_RS14295 0.66 -0.7
41,548 + EX31_RS14295 0.66 +0.5
41,548 + EX31_RS14295 0.66 +0.3
41,548 + EX31_RS14295 0.66 +0.1
41,548 + EX31_RS14295 0.66 -0.7
41,548 + EX31_RS14295 0.66 -0.7
41,548 + EX31_RS14295 0.66 -0.4
41,548 + EX31_RS14295 0.66 +0.6
41,549 - EX31_RS14295 0.66 +0.2
41,549 - EX31_RS14295 0.66 +0.5
41,549 - EX31_RS14295 0.66 +0.7
41,549 - EX31_RS14295 0.66 +0.1
41,549 - EX31_RS14295 0.66 +0.4
41,549 - EX31_RS14295 0.66 +0.2
41,549 - EX31_RS14295 0.66 -0.2
41,549 - EX31_RS14295 0.66 -0.0
41,549 - EX31_RS14295 0.66 +0.7
41,549 - EX31_RS14295 0.66 +0.5
41,549 - EX31_RS14295 0.66 -0.2
41,549 - EX31_RS14295 0.66 +0.1
41,549 - EX31_RS14295 0.66 +1.2
41,549 - EX31_RS14295 0.66 +0.4
41,549 - EX31_RS14295 0.66 -0.1
41,549 - EX31_RS14295 0.66 +0.7
41,549 - EX31_RS14295 0.66 +0.1
41,549 - EX31_RS14295 0.66 +0.9
41,549 - EX31_RS14295 0.66 +0.5
41,549 - EX31_RS14295 0.66 +0.4
41,549 - EX31_RS14295 0.66 +0.4
41,549 - EX31_RS14295 0.66 -0.2
41,549 - EX31_RS14295 0.66 +0.4
41,549 - EX31_RS14295 0.66 +0.3
41,549 - EX31_RS14295 0.66 -0.0
41,551 - EX31_RS14295 0.67 +0.0
41,551 - EX31_RS14295 0.67 +1.1
41,551 - EX31_RS14295 0.67 -0.0
41,551 - EX31_RS14295 0.67 -0.4
41,551 - EX31_RS14295 0.67 +0.2
41,551 - EX31_RS14295 0.67 +1.1
41,585 + EX31_RS14295 0.72 +0.2
41,586 - EX31_RS14295 0.72 +0.3
41,650 + EX31_RS14295 0.83 +0.3
41,650 + EX31_RS14295 0.83 +0.8
41,651 - EX31_RS14295 0.83 +0.1
41,651 - EX31_RS14295 0.83 +0.3
41,652 + EX31_RS14295 0.83 +0.6
41,652 + EX31_RS14295 0.83 +1.1
41,663 + EX31_RS14295 0.85 -1.1
41,664 - EX31_RS14295 0.85 -0.7
41,767 + +1.3
41,789 + +0.2
41,805 + -0.3
41,806 - +0.8
41,806 - -0.0
41,807 + +1.0
41,807 + +0.1
41,807 + +0.1
41,807 + +0.5
41,807 + +0.1
41,807 + -0.2
41,808 - -1.2
41,821 + +0.2
41,821 + -0.3
41,821 + -0.1
41,821 + -0.1
41,822 - -0.6
41,830 + -0.1
41,830 + +0.9
41,830 + -0.1
41,830 + +0.4
42,638 - -0.6
42,638 - -0.3
42,647 + -0.5
42,647 + +0.4
42,707 - -0.6
42,707 - +0.5

Or see this region's nucleotide sequence