Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13665 and EX31_RS13670 are separated by 244 nucleotides EX31_RS13670 and EX31_RS13675 are separated by 129 nucleotides EX31_RS13675 and EX31_RS13680 are separated by 31 nucleotides
EX31_RS13665: EX31_RS13665 - tRNA/rRNA methyltransferase, at 170,739 to 171,842
_RS13665
EX31_RS13670: EX31_RS13670 - thioredoxin TrxC, at 172,087 to 172,506
_RS13670
EX31_RS13675: EX31_RS13675 - DTW domain-containing protein, at 172,636 to 173,340
_RS13675
EX31_RS13680: EX31_RS13680 - bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase, at 173,372 to 176,092
_RS13680
Position (kb) 172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.211 kb on + strand, within EX31_RS13665 at 171.211 kb on + strand, within EX31_RS13665 at 171.211 kb on + strand, within EX31_RS13665 at 171.211 kb on + strand, within EX31_RS13665 at 171.212 kb on - strand, within EX31_RS13665 at 171.212 kb on - strand, within EX31_RS13665 at 171.212 kb on - strand, within EX31_RS13665 at 171.212 kb on - strand, within EX31_RS13665 at 171.316 kb on + strand, within EX31_RS13665 at 171.316 kb on + strand, within EX31_RS13665 at 171.316 kb on + strand, within EX31_RS13665 at 171.316 kb on + strand, within EX31_RS13665 at 171.317 kb on - strand, within EX31_RS13665 at 171.317 kb on - strand, within EX31_RS13665 at 171.317 kb on - strand, within EX31_RS13665 at 171.446 kb on - strand, within EX31_RS13665 at 171.495 kb on - strand, within EX31_RS13665 at 171.504 kb on - strand, within EX31_RS13665 at 171.624 kb on - strand, within EX31_RS13665 at 171.737 kb on + strand at 171.738 kb on - strand at 171.738 kb on - strand at 171.738 kb on - strand at 171.743 kb on + strand at 171.743 kb on + strand at 171.744 kb on - strand at 171.796 kb on + strand at 171.796 kb on + strand at 171.797 kb on - strand at 171.797 kb on - strand at 171.797 kb on - strand at 171.797 kb on - strand at 171.797 kb on - strand at 171.797 kb on - strand at 171.797 kb on - strand at 171.797 kb on - strand at 171.797 kb on - strand at 171.856 kb on + strand at 171.857 kb on - strand at 171.876 kb on + strand at 171.876 kb on + strand at 171.876 kb on + strand at 171.876 kb on + strand at 171.877 kb on - strand at 171.895 kb on - strand at 171.928 kb on - strand at 171.933 kb on - strand at 171.933 kb on - strand at 171.957 kb on + strand at 171.957 kb on + strand at 171.958 kb on - strand at 171.958 kb on - strand at 171.977 kb on + strand at 171.978 kb on - strand at 171.978 kb on - strand at 171.982 kb on - strand at 171.982 kb on - strand at 171.982 kb on - strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.988 kb on + strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.989 kb on - strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.991 kb on - strand at 171.994 kb on + strand at 171.995 kb on - strand at 171.999 kb on + strand at 171.999 kb on + strand at 171.999 kb on + strand at 172.000 kb on - strand at 172.000 kb on - strand at 172.000 kb on - strand at 172.000 kb on - strand at 172.000 kb on - strand at 172.000 kb on - strand at 172.000 kb on - strand at 172.000 kb on - strand at 172.024 kb on + strand at 172.024 kb on + strand at 172.025 kb on - strand at 172.025 kb on - strand at 172.030 kb on + strand at 172.030 kb on + strand at 172.051 kb on + strand at 172.066 kb on - strand at 172.074 kb on + strand at 172.074 kb on + strand at 172.074 kb on + strand at 172.074 kb on + strand at 172.074 kb on + strand at 172.074 kb on + strand at 172.075 kb on - strand at 172.075 kb on - strand at 172.075 kb on - strand at 172.075 kb on - strand at 172.075 kb on - strand at 172.086 kb on + strand at 172.087 kb on - strand at 172.087 kb on - strand at 172.092 kb on + strand at 172.092 kb on + strand at 172.092 kb on + strand at 172.093 kb on - strand at 172.093 kb on - strand at 172.228 kb on + strand, within EX31_RS13670 at 172.228 kb on + strand, within EX31_RS13670 at 172.229 kb on - strand, within EX31_RS13670 at 172.229 kb on - strand, within EX31_RS13670 at 172.229 kb on - strand, within EX31_RS13670 at 172.229 kb on - strand, within EX31_RS13670 at 172.229 kb on - strand, within EX31_RS13670 at 172.356 kb on + strand, within EX31_RS13670 at 172.404 kb on + strand, within EX31_RS13670 at 172.405 kb on - strand, within EX31_RS13670 at 172.417 kb on - strand, within EX31_RS13670 at 172.421 kb on + strand, within EX31_RS13670 at 172.421 kb on + strand, within EX31_RS13670 at 172.421 kb on + strand, within EX31_RS13670 at 172.421 kb on + strand, within EX31_RS13670 at 172.422 kb on - strand, within EX31_RS13670 at 172.422 kb on - strand, within EX31_RS13670 at 172.422 kb on - strand, within EX31_RS13670 at 172.422 kb on - strand, within EX31_RS13670 at 172.425 kb on + strand, within EX31_RS13670 at 172.425 kb on + strand, within EX31_RS13670 at 172.425 kb on + strand, within EX31_RS13670 at 172.425 kb on + strand, within EX31_RS13670 at 172.425 kb on + strand, within EX31_RS13670 at 172.425 kb on + strand, within EX31_RS13670 at 172.425 kb on + strand, within EX31_RS13670 at 172.425 kb on + strand, within EX31_RS13670 at 172.425 kb on + strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.426 kb on - strand, within EX31_RS13670 at 172.446 kb on + strand, within EX31_RS13670 at 172.446 kb on + strand, within EX31_RS13670 at 172.447 kb on - strand, within EX31_RS13670 at 172.447 kb on - strand, within EX31_RS13670 at 172.467 kb on + strand at 172.468 kb on - strand at 172.491 kb on + strand at 172.504 kb on + strand at 172.504 kb on + strand at 172.505 kb on - strand at 172.505 kb on - strand at 172.511 kb on + strand at 172.511 kb on + strand at 172.511 kb on + strand at 172.511 kb on + strand at 172.522 kb on - strand at 172.522 kb on - strand at 172.522 kb on - strand at 172.635 kb on + strand at 172.635 kb on + strand at 172.635 kb on + strand at 172.635 kb on + strand at 172.635 kb on + strand at 172.635 kb on + strand at 172.635 kb on + strand at 172.636 kb on - strand at 172.636 kb on - strand at 172.676 kb on + strand at 172.842 kb on + strand, within EX31_RS13675 at 172.842 kb on + strand, within EX31_RS13675 at 172.843 kb on - strand, within EX31_RS13675 at 172.854 kb on - strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.954 kb on + strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 172.955 kb on - strand, within EX31_RS13675 at 173.040 kb on + strand, within EX31_RS13675 at 173.041 kb on - strand, within EX31_RS13675 at 173.126 kb on + strand, within EX31_RS13675 at 173.126 kb on + strand, within EX31_RS13675 at 173.126 kb on + strand, within EX31_RS13675 at 173.126 kb on + strand, within EX31_RS13675 at 173.127 kb on - strand, within EX31_RS13675 at 173.127 kb on - strand, within EX31_RS13675 at 173.127 kb on - strand, within EX31_RS13675 at 173.143 kb on + strand, within EX31_RS13675 at 173.143 kb on + strand, within EX31_RS13675 at 173.144 kb on - strand, within EX31_RS13675 at 173.144 kb on - strand, within EX31_RS13675 at 173.145 kb on + strand, within EX31_RS13675 at 173.146 kb on - strand, within EX31_RS13675 at 173.256 kb on + strand, within EX31_RS13675 at 173.275 kb on + strand at 173.275 kb on + strand at 173.275 kb on + strand at 173.339 kb on - strand at 173.339 kb on - strand at 173.371 kb on + strand at 173.372 kb on - strand at 173.372 kb on - strand at 173.397 kb on + strand at 173.397 kb on + strand at 173.398 kb on - strand at 173.400 kb on + strand at 173.400 kb on + strand at 173.401 kb on - strand at 173.401 kb on - strand at 173.401 kb on - strand at 173.413 kb on + strand at 173.414 kb on - strand at 173.437 kb on + strand at 173.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 171,211 + EX31_RS13665 0.43 -0.3 171,211 + EX31_RS13665 0.43 -0.2 171,211 + EX31_RS13665 0.43 -0.2 171,211 + EX31_RS13665 0.43 -0.7 171,212 - EX31_RS13665 0.43 -0.3 171,212 - EX31_RS13665 0.43 -0.4 171,212 - EX31_RS13665 0.43 -1.0 171,212 - EX31_RS13665 0.43 +0.4 171,316 + EX31_RS13665 0.52 -0.2 171,316 + EX31_RS13665 0.52 +0.6 171,316 + EX31_RS13665 0.52 -0.5 171,316 + EX31_RS13665 0.52 -1.7 171,317 - EX31_RS13665 0.52 -0.0 171,317 - EX31_RS13665 0.52 -0.7 171,317 - EX31_RS13665 0.52 +0.3 171,446 - EX31_RS13665 0.64 +0.7 171,495 - EX31_RS13665 0.68 +0.8 171,504 - EX31_RS13665 0.69 -0.2 171,624 - EX31_RS13665 0.80 -0.3 171,737 + +0.2 171,738 - -1.0 171,738 - -1.1 171,738 - +1.2 171,743 + -1.6 171,743 + -1.4 171,744 - +1.2 171,796 + -0.5 171,796 + +1.1 171,797 - -0.7 171,797 - -1.2 171,797 - +0.2 171,797 - +0.5 171,797 - -0.1 171,797 - +0.1 171,797 - -0.4 171,797 - +0.4 171,797 - +0.1 171,856 + +0.4 171,857 - +0.8 171,876 + -0.8 171,876 + -0.1 171,876 + -0.5 171,876 + -0.2 171,877 - +0.1 171,895 - -0.2 171,928 - +1.8 171,933 - +1.5 171,933 - +0.0 171,957 + +0.3 171,957 + -0.7 171,958 - -0.2 171,958 - +0.0 171,977 + -0.6 171,978 - +0.2 171,978 - -1.9 171,982 - -0.1 171,982 - -0.3 171,982 - +0.0 171,988 + +0.1 171,988 + -0.1 171,988 + +0.1 171,988 + -0.1 171,988 + -0.1 171,988 + +0.5 171,988 + +0.1 171,988 + -0.2 171,988 + -0.1 171,988 + +0.4 171,988 + +1.0 171,988 + +0.3 171,988 + +0.3 171,988 + +0.3 171,988 + -0.1 171,988 + +0.4 171,989 - +0.1 171,989 - +0.1 171,989 - -0.0 171,989 - +0.4 171,989 - -0.3 171,989 - +0.5 171,989 - +0.1 171,989 - -0.0 171,989 - -0.2 171,989 - +0.8 171,989 - +0.8 171,990 + -0.7 171,990 + -0.8 171,990 + +0.8 171,990 + -1.3 171,990 + -0.2 171,990 + -0.6 171,990 + -0.2 171,990 + -0.0 171,991 - -0.0 171,991 - +0.9 171,991 - +0.4 171,991 - +0.7 171,991 - -0.3 171,991 - +0.1 171,991 - +0.7 171,991 - -0.3 171,991 - -0.2 171,991 - -0.3 171,991 - +0.2 171,991 - +0.2 171,991 - +0.1 171,991 - -0.5 171,991 - -0.0 171,994 + -0.7 171,995 - -0.8 171,999 + +0.3 171,999 + -0.0 171,999 + +0.2 172,000 - -0.0 172,000 - +0.5 172,000 - -0.0 172,000 - +0.0 172,000 - +0.3 172,000 - -0.2 172,000 - +1.1 172,000 - +0.0 172,024 + +0.3 172,024 + -0.1 172,025 - -0.3 172,025 - -0.3 172,030 + -0.1 172,030 + +0.3 172,051 + -0.1 172,066 - +0.7 172,074 + -0.1 172,074 + +0.2 172,074 + -0.4 172,074 + -0.4 172,074 + -0.1 172,074 + +0.0 172,075 - -0.2 172,075 - +0.7 172,075 - +0.5 172,075 - +0.1 172,075 - -0.2 172,086 + +0.5 172,087 - -0.3 172,087 - -0.3 172,092 + +0.3 172,092 + +1.0 172,092 + -0.5 172,093 - +0.3 172,093 - -0.1 172,228 + EX31_RS13670 0.34 +0.2 172,228 + EX31_RS13670 0.34 +1.1 172,229 - EX31_RS13670 0.34 -0.6 172,229 - EX31_RS13670 0.34 +0.6 172,229 - EX31_RS13670 0.34 -0.1 172,229 - EX31_RS13670 0.34 -0.3 172,229 - EX31_RS13670 0.34 +0.3 172,356 + EX31_RS13670 0.64 +0.3 172,404 + EX31_RS13670 0.75 +0.5 172,405 - EX31_RS13670 0.76 -1.0 172,417 - EX31_RS13670 0.79 +0.9 172,421 + EX31_RS13670 0.80 +0.3 172,421 + EX31_RS13670 0.80 -0.4 172,421 + EX31_RS13670 0.80 +0.0 172,421 + EX31_RS13670 0.80 -0.5 172,422 - EX31_RS13670 0.80 +0.9 172,422 - EX31_RS13670 0.80 -1.3 172,422 - EX31_RS13670 0.80 +0.1 172,422 - EX31_RS13670 0.80 +0.4 172,425 + EX31_RS13670 0.80 +0.2 172,425 + EX31_RS13670 0.80 -0.4 172,425 + EX31_RS13670 0.80 +1.0 172,425 + EX31_RS13670 0.80 +0.0 172,425 + EX31_RS13670 0.80 -0.2 172,425 + EX31_RS13670 0.80 -0.1 172,425 + EX31_RS13670 0.80 -0.2 172,425 + EX31_RS13670 0.80 -0.1 172,425 + EX31_RS13670 0.80 -0.3 172,426 - EX31_RS13670 0.81 +0.1 172,426 - EX31_RS13670 0.81 -0.0 172,426 - EX31_RS13670 0.81 +0.8 172,426 - EX31_RS13670 0.81 -0.2 172,426 - EX31_RS13670 0.81 -0.0 172,426 - EX31_RS13670 0.81 +0.0 172,426 - EX31_RS13670 0.81 -0.6 172,426 - EX31_RS13670 0.81 -0.9 172,426 - EX31_RS13670 0.81 -0.3 172,426 - EX31_RS13670 0.81 -1.1 172,446 + EX31_RS13670 0.85 +0.6 172,446 + EX31_RS13670 0.85 +0.3 172,447 - EX31_RS13670 0.86 -0.4 172,447 - EX31_RS13670 0.86 -0.4 172,467 + -0.3 172,468 - -0.2 172,491 + -1.5 172,504 + +0.1 172,504 + -0.2 172,505 - -0.4 172,505 - -0.5 172,511 + -0.3 172,511 + +0.1 172,511 + +0.0 172,511 + -0.5 172,522 - +0.0 172,522 - -0.3 172,522 - +0.5 172,635 + -0.8 172,635 + -0.2 172,635 + +0.4 172,635 + +0.2 172,635 + +0.5 172,635 + -0.8 172,635 + -0.8 172,636 - +0.4 172,636 - -1.5 172,676 + -0.6 172,842 + EX31_RS13675 0.29 +0.6 172,842 + EX31_RS13675 0.29 +0.8 172,843 - EX31_RS13675 0.29 +0.7 172,854 - EX31_RS13675 0.31 +0.2 172,954 + EX31_RS13675 0.45 -0.2 172,954 + EX31_RS13675 0.45 +0.1 172,954 + EX31_RS13675 0.45 -0.2 172,954 + EX31_RS13675 0.45 -1.6 172,954 + EX31_RS13675 0.45 +0.1 172,954 + EX31_RS13675 0.45 -0.5 172,954 + EX31_RS13675 0.45 -0.8 172,954 + EX31_RS13675 0.45 -0.2 172,954 + EX31_RS13675 0.45 -0.6 172,954 + EX31_RS13675 0.45 -0.1 172,954 + EX31_RS13675 0.45 -0.4 172,954 + EX31_RS13675 0.45 +0.5 172,954 + EX31_RS13675 0.45 -1.1 172,955 - EX31_RS13675 0.45 -0.0 172,955 - EX31_RS13675 0.45 -0.6 172,955 - EX31_RS13675 0.45 -0.0 172,955 - EX31_RS13675 0.45 -0.6 172,955 - EX31_RS13675 0.45 -0.1 172,955 - EX31_RS13675 0.45 +0.1 172,955 - EX31_RS13675 0.45 -0.1 172,955 - EX31_RS13675 0.45 +0.6 172,955 - EX31_RS13675 0.45 -0.8 172,955 - EX31_RS13675 0.45 -0.2 172,955 - EX31_RS13675 0.45 -0.1 172,955 - EX31_RS13675 0.45 +0.2 172,955 - EX31_RS13675 0.45 +0.6 172,955 - EX31_RS13675 0.45 -1.1 172,955 - EX31_RS13675 0.45 -0.4 173,040 + EX31_RS13675 0.57 +0.3 173,041 - EX31_RS13675 0.57 -0.3 173,126 + EX31_RS13675 0.70 +0.2 173,126 + EX31_RS13675 0.70 -0.3 173,126 + EX31_RS13675 0.70 -0.1 173,126 + EX31_RS13675 0.70 -0.8 173,127 - EX31_RS13675 0.70 -0.1 173,127 - EX31_RS13675 0.70 -0.2 173,127 - EX31_RS13675 0.70 -0.7 173,143 + EX31_RS13675 0.72 -0.5 173,143 + EX31_RS13675 0.72 -1.8 173,144 - EX31_RS13675 0.72 -0.0 173,144 - EX31_RS13675 0.72 -0.4 173,145 + EX31_RS13675 0.72 +0.3 173,146 - EX31_RS13675 0.72 +0.0 173,256 + EX31_RS13675 0.88 +0.3 173,275 + +0.5 173,275 + -0.7 173,275 + -1.2 173,339 - +0.2 173,339 - +0.3 173,371 + -2.2 173,372 - -0.2 173,372 - -2.4 173,397 + +0.1 173,397 + -0.0 173,398 - +0.4 173,400 + +1.2 173,400 + -0.5 173,401 - -0.1 173,401 - -1.3 173,401 - -1.4 173,413 + -0.5 173,414 - -0.0 173,437 + -0.5 173,438 - -0.7
Or see this region's nucleotide sequence