Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08520 and EX31_RS08525 are separated by 273 nucleotides EX31_RS08525 and EX31_RS08530 are separated by 122 nucleotides EX31_RS08530 and EX31_RS08535 overlap by 1 nucleotides EX31_RS08535 and EX31_RS08540 are separated by 79 nucleotides
EX31_RS08520: EX31_RS08520 - polyribonucleotide nucleotidyltransferase, at 210,159 to 212,282
_RS08520
EX31_RS08525: EX31_RS08525 - 30S ribosomal protein S15, at 212,556 to 212,825
_RS08525
EX31_RS08530: EX31_RS08530 - tRNA pseudouridine(55) synthase TruB, at 212,948 to 213,892
_RS08530
EX31_RS08535: EX31_RS08535 - 30S ribosome-binding factor RbfA, at 213,892 to 214,305
_RS08535
EX31_RS08540: EX31_RS08540 - translation initiation factor IF-2, at 214,385 to 217,078
_RS08540
Position (kb) 212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 212.080 kb on + strand at 212.081 kb on - strand at 212.081 kb on - strand at 212.084 kb on + strand at 212.084 kb on + strand at 212.085 kb on - strand at 212.085 kb on - strand at 212.085 kb on - strand at 212.085 kb on - strand at 212.085 kb on - strand at 212.085 kb on - strand at 212.095 kb on + strand at 212.096 kb on - strand at 212.096 kb on - strand at 212.096 kb on - strand at 212.096 kb on - strand at 212.099 kb on + strand at 212.099 kb on + strand at 212.100 kb on - strand at 212.100 kb on - strand at 212.132 kb on + strand at 212.132 kb on + strand at 212.184 kb on - strand at 212.189 kb on + strand at 212.262 kb on - strand at 212.267 kb on + strand at 212.277 kb on - strand at 212.277 kb on - strand at 212.285 kb on + strand at 212.285 kb on + strand at 212.285 kb on + strand at 212.285 kb on + strand at 212.285 kb on + strand at 212.285 kb on + strand at 212.285 kb on + strand at 212.285 kb on + strand at 212.285 kb on + strand at 212.285 kb on + strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.286 kb on - strand at 212.299 kb on - strand at 212.315 kb on - strand at 212.315 kb on - strand at 212.315 kb on - strand at 212.340 kb on - strand at 212.340 kb on - strand at 212.356 kb on - strand at 212.356 kb on - strand at 212.370 kb on - strand at 212.382 kb on + strand at 212.382 kb on + strand at 212.382 kb on + strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.383 kb on - strand at 212.384 kb on + strand at 212.384 kb on + strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.385 kb on - strand at 212.386 kb on + strand at 212.386 kb on + strand at 212.386 kb on + strand at 212.387 kb on - strand at 212.387 kb on - strand at 212.387 kb on - strand at 212.404 kb on + strand at 212.404 kb on + strand at 212.405 kb on - strand at 212.418 kb on - strand at 212.457 kb on - strand at 212.461 kb on + strand at 212.462 kb on - strand at 212.462 kb on - strand at 212.468 kb on - strand at 212.482 kb on + strand at 212.482 kb on + strand at 212.483 kb on - strand at 212.483 kb on - strand at 212.483 kb on - strand at 212.483 kb on - strand at 212.483 kb on - strand at 212.483 kb on - strand at 212.483 kb on - strand at 212.483 kb on - strand at 212.515 kb on + strand at 212.516 kb on - strand at 212.516 kb on - strand at 212.516 kb on - strand at 212.516 kb on - strand at 212.516 kb on - strand at 212.526 kb on - strand at 212.538 kb on - strand at 212.538 kb on - strand at 212.538 kb on - strand at 212.538 kb on - strand at 212.538 kb on - strand at 212.602 kb on - strand, within EX31_RS08525 at 212.873 kb on - strand at 212.873 kb on - strand at 212.873 kb on - strand at 212.873 kb on - strand at 212.893 kb on - strand at 212.958 kb on + strand at 212.959 kb on - strand at 212.959 kb on - strand at 212.959 kb on - strand at 212.959 kb on - strand at 213.025 kb on + strand at 213.025 kb on + strand at 213.025 kb on + strand at 213.025 kb on + strand at 213.025 kb on + strand at 213.025 kb on + strand at 213.026 kb on - strand at 213.026 kb on - strand at 213.026 kb on - strand at 213.026 kb on - strand at 213.026 kb on - strand at 213.026 kb on - strand at 213.026 kb on - strand at 213.026 kb on - strand at 213.106 kb on - strand, within EX31_RS08530 at 213.106 kb on - strand, within EX31_RS08530 at 213.106 kb on - strand, within EX31_RS08530 at 213.270 kb on + strand, within EX31_RS08530 at 213.270 kb on + strand, within EX31_RS08530 at 213.271 kb on - strand, within EX31_RS08530 at 213.298 kb on - strand, within EX31_RS08530 at 213.298 kb on - strand, within EX31_RS08530 at 213.298 kb on - strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.357 kb on + strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.358 kb on - strand, within EX31_RS08530 at 213.410 kb on + strand, within EX31_RS08530 at 213.410 kb on + strand, within EX31_RS08530 at 213.410 kb on + strand, within EX31_RS08530 at 213.410 kb on + strand, within EX31_RS08530 at 213.411 kb on - strand, within EX31_RS08530 at 213.413 kb on - strand, within EX31_RS08530 at 213.413 kb on - strand, within EX31_RS08530 at 213.426 kb on + strand, within EX31_RS08530 at 213.426 kb on + strand, within EX31_RS08530 at 213.427 kb on - strand, within EX31_RS08530 at 213.427 kb on - strand, within EX31_RS08530 at 213.427 kb on - strand, within EX31_RS08530 at 213.427 kb on - strand, within EX31_RS08530 at 213.477 kb on + strand, within EX31_RS08530 at 213.484 kb on - strand, within EX31_RS08530 at 213.501 kb on + strand, within EX31_RS08530 at 213.501 kb on + strand, within EX31_RS08530 at 213.501 kb on + strand, within EX31_RS08530 at 213.502 kb on - strand, within EX31_RS08530 at 213.516 kb on + strand, within EX31_RS08530 at 213.516 kb on + strand, within EX31_RS08530 at 213.516 kb on + strand, within EX31_RS08530 at 213.516 kb on + strand, within EX31_RS08530 at 213.516 kb on + strand, within EX31_RS08530 at 213.516 kb on + strand, within EX31_RS08530 at 213.516 kb on + strand, within EX31_RS08530 at 213.517 kb on - strand, within EX31_RS08530 at 213.517 kb on - strand, within EX31_RS08530 at 213.517 kb on - strand, within EX31_RS08530 at 213.517 kb on - strand, within EX31_RS08530 at 213.517 kb on - strand, within EX31_RS08530 at 213.631 kb on + strand, within EX31_RS08530 at 213.631 kb on + strand, within EX31_RS08530 at 213.637 kb on + strand, within EX31_RS08530 at 213.637 kb on + strand, within EX31_RS08530 at 213.637 kb on + strand, within EX31_RS08530 at 213.638 kb on - strand, within EX31_RS08530 at 213.786 kb on + strand, within EX31_RS08530 at 213.786 kb on + strand, within EX31_RS08530 at 213.786 kb on + strand, within EX31_RS08530 at 213.787 kb on - strand, within EX31_RS08530 at 213.787 kb on - strand, within EX31_RS08530 at 213.787 kb on - strand, within EX31_RS08530 at 213.817 kb on + strand at 213.817 kb on + strand at 213.818 kb on - strand at 213.818 kb on - strand at 213.818 kb on - strand at 213.846 kb on - strand at 213.860 kb on + strand at 213.860 kb on + strand at 213.860 kb on + strand at 213.860 kb on + strand at 213.860 kb on + strand at 213.860 kb on + strand at 213.860 kb on + strand at 213.860 kb on + strand at 213.861 kb on - strand at 213.861 kb on - strand at 213.861 kb on - strand at 213.861 kb on - strand at 213.861 kb on - strand at 213.861 kb on - strand at 213.861 kb on - strand at 213.893 kb on + strand at 213.893 kb on + strand at 213.893 kb on + strand at 213.893 kb on + strand at 213.894 kb on - strand at 213.894 kb on - strand at 213.970 kb on - strand, within EX31_RS08535 at 213.970 kb on - strand, within EX31_RS08535 at 213.970 kb on - strand, within EX31_RS08535 at 213.970 kb on - strand, within EX31_RS08535 at 213.976 kb on - strand, within EX31_RS08535 at 213.976 kb on - strand, within EX31_RS08535 at 213.976 kb on - strand, within EX31_RS08535 at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.338 kb on - strand at 214.338 kb on - strand at 214.338 kb on - strand at 214.338 kb on - strand at 214.373 kb on - strand at 214.373 kb on - strand at 214.373 kb on - strand at 214.373 kb on - strand at 214.394 kb on - strand at 214.394 kb on - strand at 214.394 kb on - strand at 214.397 kb on - strand at 214.397 kb on - strand at 214.397 kb on - strand at 214.397 kb on - strand at 214.397 kb on - strand at 214.397 kb on - strand at 214.397 kb on - strand at 214.397 kb on - strand at 214.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 212,080 + +1.7 212,081 - -3.0 212,081 - -1.0 212,084 + -0.1 212,084 + -1.6 212,085 - -0.3 212,085 - -1.6 212,085 - -1.3 212,085 - -0.8 212,085 - -0.2 212,085 - -1.0 212,095 + +0.2 212,096 - -1.5 212,096 - -0.9 212,096 - -1.0 212,096 - +0.7 212,099 + +0.5 212,099 + -0.6 212,100 - -0.6 212,100 - -2.5 212,132 + -0.8 212,132 + -0.3 212,184 - -1.9 212,189 + -1.6 212,262 - -0.8 212,267 + +0.3 212,277 - +0.7 212,277 - -0.9 212,285 + -2.7 212,285 + +0.2 212,285 + +0.3 212,285 + -1.6 212,285 + -0.2 212,285 + -0.5 212,285 + -1.9 212,285 + -1.7 212,285 + -0.1 212,285 + -1.4 212,286 - -2.5 212,286 - -1.4 212,286 - -1.5 212,286 - +0.3 212,286 - +0.1 212,286 - -1.2 212,286 - -1.4 212,286 - -1.9 212,286 - -1.8 212,286 - -0.2 212,286 - -1.0 212,286 - -0.5 212,286 - -0.4 212,299 - -0.0 212,315 - -1.1 212,315 - +0.0 212,315 - +0.2 212,340 - +0.6 212,340 - +0.5 212,356 - +0.0 212,356 - +0.3 212,370 - -0.3 212,382 + +1.5 212,382 + -1.1 212,382 + -0.7 212,383 - +0.3 212,383 - +0.3 212,383 - +0.0 212,383 - +0.6 212,383 - +0.3 212,383 - -0.0 212,383 - -0.3 212,383 - +0.6 212,383 - -0.1 212,383 - -0.1 212,383 - +0.1 212,383 - +0.5 212,383 - -0.0 212,383 - -0.7 212,383 - -0.7 212,383 - +0.2 212,384 + -1.5 212,384 + +0.7 212,385 - +0.6 212,385 - -0.5 212,385 - +0.1 212,385 - +1.4 212,385 - -0.4 212,385 - +1.7 212,385 - -0.2 212,385 - +0.4 212,385 - +1.0 212,385 - +0.9 212,385 - +0.8 212,385 - -1.1 212,385 - +0.1 212,385 - +0.6 212,385 - -0.2 212,385 - -0.0 212,385 - +0.3 212,386 + -1.2 212,386 + -1.5 212,386 + -0.3 212,387 - -0.4 212,387 - +0.6 212,387 - +0.3 212,404 + +0.5 212,404 + -0.9 212,405 - +1.3 212,418 - -0.6 212,457 - -0.4 212,461 + -1.1 212,462 - +1.4 212,462 - -0.1 212,468 - +0.1 212,482 + -0.6 212,482 + -2.5 212,483 - +0.3 212,483 - +0.6 212,483 - +1.5 212,483 - -0.2 212,483 - +0.2 212,483 - -1.0 212,483 - +0.5 212,483 - +0.5 212,515 + +0.3 212,516 - -0.2 212,516 - -0.4 212,516 - +0.8 212,516 - +0.5 212,516 - +0.3 212,526 - +0.2 212,538 - +0.4 212,538 - +0.6 212,538 - -0.1 212,538 - +1.6 212,538 - -0.2 212,602 - EX31_RS08525 0.17 -0.8 212,873 - +0.3 212,873 - +1.0 212,873 - -0.0 212,873 - +0.4 212,893 - -0.1 212,958 + -0.3 212,959 - -0.6 212,959 - +0.9 212,959 - +0.7 212,959 - +0.1 213,025 + -0.1 213,025 + +0.8 213,025 + -0.5 213,025 + +0.7 213,025 + +0.8 213,025 + -0.9 213,026 - +0.2 213,026 - -1.0 213,026 - +0.3 213,026 - +0.3 213,026 - -0.4 213,026 - +0.4 213,026 - -0.6 213,026 - +0.0 213,106 - EX31_RS08530 0.17 +0.4 213,106 - EX31_RS08530 0.17 +1.0 213,106 - EX31_RS08530 0.17 +0.5 213,270 + EX31_RS08530 0.34 +0.2 213,270 + EX31_RS08530 0.34 -0.7 213,271 - EX31_RS08530 0.34 +0.6 213,298 - EX31_RS08530 0.37 +0.7 213,298 - EX31_RS08530 0.37 +0.8 213,298 - EX31_RS08530 0.37 -2.1 213,357 + EX31_RS08530 0.43 -0.3 213,357 + EX31_RS08530 0.43 -0.5 213,357 + EX31_RS08530 0.43 +0.0 213,357 + EX31_RS08530 0.43 -0.2 213,357 + EX31_RS08530 0.43 +0.1 213,357 + EX31_RS08530 0.43 +0.4 213,357 + EX31_RS08530 0.43 -1.3 213,357 + EX31_RS08530 0.43 +0.5 213,357 + EX31_RS08530 0.43 -0.5 213,357 + EX31_RS08530 0.43 -0.2 213,357 + EX31_RS08530 0.43 +0.7 213,358 - EX31_RS08530 0.43 -0.2 213,358 - EX31_RS08530 0.43 -0.3 213,358 - EX31_RS08530 0.43 +0.3 213,358 - EX31_RS08530 0.43 +0.7 213,358 - EX31_RS08530 0.43 +0.6 213,358 - EX31_RS08530 0.43 +0.5 213,358 - EX31_RS08530 0.43 +0.0 213,358 - EX31_RS08530 0.43 +0.7 213,358 - EX31_RS08530 0.43 +0.1 213,358 - EX31_RS08530 0.43 +0.1 213,358 - EX31_RS08530 0.43 +0.4 213,358 - EX31_RS08530 0.43 +1.1 213,358 - EX31_RS08530 0.43 +0.0 213,358 - EX31_RS08530 0.43 -0.3 213,358 - EX31_RS08530 0.43 +0.3 213,358 - EX31_RS08530 0.43 +0.1 213,358 - EX31_RS08530 0.43 -0.2 213,410 + EX31_RS08530 0.49 -0.1 213,410 + EX31_RS08530 0.49 +1.5 213,410 + EX31_RS08530 0.49 -0.0 213,410 + EX31_RS08530 0.49 +0.4 213,411 - EX31_RS08530 0.49 +0.2 213,413 - EX31_RS08530 0.49 -0.2 213,413 - EX31_RS08530 0.49 +0.1 213,426 + EX31_RS08530 0.51 -0.1 213,426 + EX31_RS08530 0.51 -0.4 213,427 - EX31_RS08530 0.51 +0.3 213,427 - EX31_RS08530 0.51 +0.5 213,427 - EX31_RS08530 0.51 -0.2 213,427 - EX31_RS08530 0.51 +1.5 213,477 + EX31_RS08530 0.56 -0.5 213,484 - EX31_RS08530 0.57 -0.1 213,501 + EX31_RS08530 0.59 -0.3 213,501 + EX31_RS08530 0.59 +0.0 213,501 + EX31_RS08530 0.59 -0.2 213,502 - EX31_RS08530 0.59 +0.2 213,516 + EX31_RS08530 0.60 +1.4 213,516 + EX31_RS08530 0.60 +1.0 213,516 + EX31_RS08530 0.60 +0.2 213,516 + EX31_RS08530 0.60 +0.8 213,516 + EX31_RS08530 0.60 +1.2 213,516 + EX31_RS08530 0.60 -0.4 213,516 + EX31_RS08530 0.60 -0.3 213,517 - EX31_RS08530 0.60 +0.5 213,517 - EX31_RS08530 0.60 -2.7 213,517 - EX31_RS08530 0.60 +0.6 213,517 - EX31_RS08530 0.60 +0.6 213,517 - EX31_RS08530 0.60 -0.2 213,631 + EX31_RS08530 0.72 +0.0 213,631 + EX31_RS08530 0.72 -0.6 213,637 + EX31_RS08530 0.73 -0.0 213,637 + EX31_RS08530 0.73 +0.6 213,637 + EX31_RS08530 0.73 +0.8 213,638 - EX31_RS08530 0.73 +0.8 213,786 + EX31_RS08530 0.89 -0.6 213,786 + EX31_RS08530 0.89 -0.1 213,786 + EX31_RS08530 0.89 -1.8 213,787 - EX31_RS08530 0.89 -0.5 213,787 - EX31_RS08530 0.89 +0.1 213,787 - EX31_RS08530 0.89 -0.5 213,817 + +0.9 213,817 + -0.9 213,818 - +0.3 213,818 - +0.2 213,818 - -0.2 213,846 - -1.1 213,860 + +0.6 213,860 + -0.5 213,860 + -1.3 213,860 + -0.1 213,860 + -1.5 213,860 + +0.8 213,860 + -1.7 213,860 + -0.2 213,861 - +0.7 213,861 - +0.3 213,861 - -0.3 213,861 - +0.2 213,861 - +0.3 213,861 - -0.0 213,861 - -0.7 213,893 + -0.0 213,893 + -0.6 213,893 + +0.6 213,893 + +0.3 213,894 - -0.1 213,894 - -0.6 213,970 - EX31_RS08535 0.19 +0.3 213,970 - EX31_RS08535 0.19 +0.6 213,970 - EX31_RS08535 0.19 -1.6 213,970 - EX31_RS08535 0.19 +0.1 213,976 - EX31_RS08535 0.20 +1.0 213,976 - EX31_RS08535 0.20 -2.4 213,976 - EX31_RS08535 0.20 -0.5 214,334 - -0.9 214,334 - +0.4 214,334 - -0.2 214,334 - -0.1 214,334 - +0.8 214,338 - +0.0 214,338 - -1.0 214,338 - +0.1 214,338 - +0.1 214,373 - -0.8 214,373 - -0.3 214,373 - -2.3 214,373 - +0.1 214,394 - -0.3 214,394 - +0.8 214,394 - +0.8 214,397 - -0.0 214,397 - -0.6 214,397 - -0.6 214,397 - -0.2 214,397 - -1.0 214,397 - -0.4 214,397 - -0.4 214,397 - +0.8 214,397 - +0.5
Or see this region's nucleotide sequence