Strain Fitness in Rahnella sp. WP5 around EX31_RS01985

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01980 and EX31_RS01985 are separated by 19 nucleotidesEX31_RS01985 and EX31_RS01990 overlap by 8 nucleotidesEX31_RS01990 and EX31_RS01995 are separated by 11 nucleotides EX31_RS01980: EX31_RS01980 - type VI secretion system baseplate subunit TssG, at 434,263 to 435,360 _RS01980 EX31_RS01985: EX31_RS01985 - type VI secretion system lipoprotein TssJ, at 435,380 to 435,877 _RS01985 EX31_RS01990: EX31_RS01990 - type VI secretion system baseplate subunit TssE, at 435,870 to 436,307 _RS01990 EX31_RS01995: EX31_RS01995 - type VI secretion protein ImpA, at 436,319 to 437,704 _RS01995 Position (kb) 435 436Strain fitness (log2 ratio) -2 -1 0 1 2at 434.421 kb on - strand, within EX31_RS01980at 434.533 kb on + strand, within EX31_RS01980at 434.533 kb on + strand, within EX31_RS01980at 434.534 kb on - strand, within EX31_RS01980at 434.556 kb on + strand, within EX31_RS01980at 434.556 kb on + strand, within EX31_RS01980at 434.556 kb on + strand, within EX31_RS01980at 434.557 kb on - strand, within EX31_RS01980at 434.557 kb on - strand, within EX31_RS01980at 434.557 kb on - strand, within EX31_RS01980at 434.557 kb on - strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.564 kb on - strand, within EX31_RS01980at 434.564 kb on - strand, within EX31_RS01980at 434.564 kb on - strand, within EX31_RS01980at 434.564 kb on - strand, within EX31_RS01980at 434.650 kb on + strand, within EX31_RS01980at 434.650 kb on + strand, within EX31_RS01980at 434.651 kb on - strand, within EX31_RS01980at 434.671 kb on + strand, within EX31_RS01980at 434.671 kb on + strand, within EX31_RS01980at 434.672 kb on - strand, within EX31_RS01980at 434.678 kb on - strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.888 kb on + strand, within EX31_RS01980at 434.888 kb on + strand, within EX31_RS01980at 434.910 kb on + strand, within EX31_RS01980at 434.911 kb on - strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.107 kb on - strand, within EX31_RS01980at 435.107 kb on - strand, within EX31_RS01980at 435.134 kb on + strand, within EX31_RS01980at 435.243 kb on + strand, within EX31_RS01980at 435.243 kb on + strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.261 kb on + strandat 435.279 kb on + strandat 435.280 kb on - strandat 435.282 kb on + strandat 435.283 kb on - strandat 435.340 kb on + strandat 435.370 kb on + strandat 435.375 kb on + strandat 435.376 kb on - strandat 435.559 kb on + strand, within EX31_RS01985at 435.559 kb on + strand, within EX31_RS01985at 435.559 kb on + strand, within EX31_RS01985at 435.559 kb on + strand, within EX31_RS01985at 435.560 kb on - strand, within EX31_RS01985at 435.563 kb on + strand, within EX31_RS01985at 435.564 kb on - strand, within EX31_RS01985at 435.616 kb on + strand, within EX31_RS01985at 435.763 kb on + strand, within EX31_RS01985at 435.772 kb on + strand, within EX31_RS01985at 435.772 kb on + strand, within EX31_RS01985at 435.773 kb on - strand, within EX31_RS01985at 435.871 kb on + strandat 435.871 kb on + strandat 435.879 kb on - strandat 436.157 kb on + strand, within EX31_RS01990at 436.229 kb on - strand, within EX31_RS01990at 436.280 kb on + strandat 436.281 kb on - strandat 436.281 kb on - strandat 436.296 kb on + strandat 436.324 kb on + strandat 436.325 kb on - strandat 436.505 kb on + strand, within EX31_RS01995at 436.505 kb on + strand, within EX31_RS01995at 436.665 kb on + strand, within EX31_RS01995at 436.795 kb on + strand, within EX31_RS01995at 436.796 kb on - strand, within EX31_RS01995at 436.810 kb on + strand, within EX31_RS01995at 436.810 kb on + strand, within EX31_RS01995at 436.832 kb on - strand, within EX31_RS01995at 436.832 kb on - strand, within EX31_RS01995

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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434,421 - EX31_RS01980 0.14 -0.3
434,533 + EX31_RS01980 0.25 -0.3
434,533 + EX31_RS01980 0.25 +0.6
434,534 - EX31_RS01980 0.25 +0.9
434,556 + EX31_RS01980 0.27 -0.2
434,556 + EX31_RS01980 0.27 -0.9
434,556 + EX31_RS01980 0.27 +0.3
434,557 - EX31_RS01980 0.27 +0.0
434,557 - EX31_RS01980 0.27 -0.1
434,557 - EX31_RS01980 0.27 -0.6
434,557 - EX31_RS01980 0.27 -0.2
434,563 + EX31_RS01980 0.27 -0.1
434,563 + EX31_RS01980 0.27 +0.7
434,563 + EX31_RS01980 0.27 +0.6
434,563 + EX31_RS01980 0.27 +0.2
434,563 + EX31_RS01980 0.27 -0.4
434,563 + EX31_RS01980 0.27 +0.9
434,563 + EX31_RS01980 0.27 -2.2
434,564 - EX31_RS01980 0.27 -1.0
434,564 - EX31_RS01980 0.27 +0.4
434,564 - EX31_RS01980 0.27 +0.5
434,564 - EX31_RS01980 0.27 -0.5
434,650 + EX31_RS01980 0.35 +1.2
434,650 + EX31_RS01980 0.35 +0.1
434,651 - EX31_RS01980 0.35 -0.2
434,671 + EX31_RS01980 0.37 -0.8
434,671 + EX31_RS01980 0.37 -0.5
434,672 - EX31_RS01980 0.37 -0.4
434,678 - EX31_RS01980 0.38 -0.9
434,750 + EX31_RS01980 0.44 -1.5
434,750 + EX31_RS01980 0.44 +1.8
434,750 + EX31_RS01980 0.44 +0.4
434,750 + EX31_RS01980 0.44 +1.1
434,750 + EX31_RS01980 0.44 -0.9
434,760 + EX31_RS01980 0.45 +1.0
434,760 + EX31_RS01980 0.45 +1.1
434,760 + EX31_RS01980 0.45 +0.9
434,760 + EX31_RS01980 0.45 -0.0
434,760 + EX31_RS01980 0.45 -0.1
434,760 + EX31_RS01980 0.45 -0.3
434,761 - EX31_RS01980 0.45 +0.3
434,761 - EX31_RS01980 0.45 -0.5
434,761 - EX31_RS01980 0.45 +0.3
434,761 - EX31_RS01980 0.45 -0.6
434,761 - EX31_RS01980 0.45 -1.8
434,761 - EX31_RS01980 0.45 +1.3
434,888 + EX31_RS01980 0.57 -1.0
434,888 + EX31_RS01980 0.57 -0.3
434,910 + EX31_RS01980 0.59 +0.7
434,911 - EX31_RS01980 0.59 +0.6
435,106 + EX31_RS01980 0.77 -0.6
435,106 + EX31_RS01980 0.77 -0.1
435,106 + EX31_RS01980 0.77 +0.7
435,106 + EX31_RS01980 0.77 +0.4
435,106 + EX31_RS01980 0.77 +0.6
435,106 + EX31_RS01980 0.77 -0.5
435,107 - EX31_RS01980 0.77 -0.7
435,107 - EX31_RS01980 0.77 -0.7
435,134 + EX31_RS01980 0.79 -0.0
435,243 + EX31_RS01980 0.89 -0.5
435,243 + EX31_RS01980 0.89 -0.4
435,244 - EX31_RS01980 0.89 -0.2
435,244 - EX31_RS01980 0.89 +0.6
435,244 - EX31_RS01980 0.89 -0.5
435,244 - EX31_RS01980 0.89 -1.3
435,261 + +0.2
435,279 + +0.9
435,280 - -0.1
435,282 + -0.1
435,283 - -1.3
435,340 + +0.8
435,370 + +0.3
435,375 + +0.8
435,376 - +0.5
435,559 + EX31_RS01985 0.36 +0.9
435,559 + EX31_RS01985 0.36 +0.1
435,559 + EX31_RS01985 0.36 -0.7
435,559 + EX31_RS01985 0.36 -0.4
435,560 - EX31_RS01985 0.36 -0.3
435,563 + EX31_RS01985 0.37 -0.8
435,564 - EX31_RS01985 0.37 -0.4
435,616 + EX31_RS01985 0.47 -0.8
435,763 + EX31_RS01985 0.77 -1.2
435,772 + EX31_RS01985 0.79 +0.1
435,772 + EX31_RS01985 0.79 -0.1
435,773 - EX31_RS01985 0.79 -1.0
435,871 + -0.2
435,871 + -0.3
435,879 - -0.9
436,157 + EX31_RS01990 0.66 -0.6
436,229 - EX31_RS01990 0.82 -0.7
436,280 + +2.0
436,281 - -1.2
436,281 - +1.1
436,296 + +0.4
436,324 + +1.3
436,325 - +0.2
436,505 + EX31_RS01995 0.13 -0.4
436,505 + EX31_RS01995 0.13 +0.1
436,665 + EX31_RS01995 0.25 +0.2
436,795 + EX31_RS01995 0.34 -0.1
436,796 - EX31_RS01995 0.34 +0.3
436,810 + EX31_RS01995 0.35 +0.4
436,810 + EX31_RS01995 0.35 +0.1
436,832 - EX31_RS01995 0.37 -0.8
436,832 - EX31_RS01995 0.37 +0.3

Or see this region's nucleotide sequence