Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01520 and EX31_RS01530 are separated by 339 nucleotides EX31_RS01530 and EX31_RS25060 are separated by 387 nucleotides EX31_RS25060 and EX31_RS01535 are separated by 554 nucleotides EX31_RS01535 and EX31_RS25715 are separated by 90 nucleotides
EX31_RS01520: EX31_RS01520 - IS3 family transposase, at 341,528 to 342,676
_RS01520
EX31_RS01530: EX31_RS01530 - hypothetical protein, at 343,016 to 343,264
_RS01530
EX31_RS25060: EX31_RS25060 - DUF2767 family protein, at 343,652 to 343,852
_RS25060
EX31_RS01535: EX31_RS01535 - hypothetical protein, at 344,407 to 344,598
_RS01535
EX31_RS25715: EX31_RS25715 - hypothetical protein, at 344,689 to 344,904
_RS25715
Position (kb) 343
344 Strain fitness (log2 ratio) -2
-1
0
1
2 at 342.698 kb on - strand at 342.700 kb on + strand at 342.700 kb on + strand at 342.701 kb on - strand at 342.701 kb on - strand at 342.723 kb on - strand at 342.762 kb on + strand at 342.762 kb on + strand at 342.763 kb on - strand at 342.763 kb on - strand at 342.766 kb on + strand at 342.766 kb on + strand at 342.766 kb on + strand at 342.767 kb on - strand at 342.767 kb on - strand at 342.767 kb on - strand at 342.819 kb on - strand at 342.821 kb on - strand at 342.821 kb on - strand at 342.882 kb on + strand at 342.901 kb on - strand at 342.904 kb on + strand at 342.937 kb on + strand at 342.937 kb on + strand at 342.937 kb on + strand at 342.938 kb on - strand at 342.938 kb on - strand at 342.938 kb on - strand at 343.033 kb on + strand at 343.055 kb on + strand, within EX31_RS01530 at 343.148 kb on - strand, within EX31_RS01530 at 343.204 kb on - strand, within EX31_RS01530 at 343.293 kb on + strand at 343.361 kb on + strand at 343.385 kb on - strand at 343.394 kb on + strand at 343.394 kb on + strand at 343.408 kb on - strand at 343.419 kb on + strand at 343.439 kb on - strand at 343.448 kb on + strand at 343.448 kb on + strand at 343.522 kb on + strand at 343.532 kb on + strand at 343.532 kb on + strand at 343.533 kb on - strand at 343.533 kb on - strand at 343.534 kb on + strand at 343.534 kb on + strand at 343.534 kb on + strand at 343.534 kb on + strand at 343.534 kb on + strand at 343.535 kb on - strand at 343.535 kb on - strand at 343.535 kb on - strand at 343.535 kb on - strand at 343.535 kb on - strand at 343.538 kb on + strand at 343.538 kb on + strand at 343.538 kb on + strand at 343.539 kb on - strand at 343.539 kb on - strand at 343.542 kb on + strand at 343.542 kb on + strand at 343.543 kb on - strand at 343.543 kb on - strand at 343.574 kb on + strand at 343.616 kb on - strand at 343.653 kb on + strand at 343.654 kb on - strand at 343.668 kb on + strand at 343.668 kb on + strand at 343.669 kb on - strand at 343.673 kb on + strand, within EX31_RS25060 at 343.673 kb on + strand, within EX31_RS25060 at 343.709 kb on + strand, within EX31_RS25060 at 343.717 kb on + strand, within EX31_RS25060 at 343.717 kb on + strand, within EX31_RS25060 at 343.717 kb on + strand, within EX31_RS25060 at 343.832 kb on + strand, within EX31_RS25060 at 343.832 kb on + strand, within EX31_RS25060 at 343.833 kb on - strand at 343.833 kb on - strand at 343.987 kb on + strand at 343.987 kb on + strand at 343.988 kb on - strand at 344.012 kb on + strand at 344.013 kb on - strand at 344.013 kb on - strand at 344.030 kb on - strand at 344.033 kb on + strand at 344.034 kb on - strand at 344.038 kb on + strand at 344.067 kb on + strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.073 kb on + strand at 344.074 kb on - strand at 344.075 kb on + strand at 344.076 kb on - strand at 344.076 kb on - strand at 344.089 kb on + strand at 344.089 kb on + strand at 344.090 kb on - strand at 344.090 kb on - strand at 344.101 kb on - strand at 344.138 kb on - strand at 344.188 kb on + strand at 344.201 kb on + strand at 344.227 kb on + strand at 344.259 kb on + strand at 344.259 kb on + strand at 344.259 kb on + strand at 344.259 kb on + strand at 344.260 kb on - strand at 344.264 kb on - strand at 344.280 kb on + strand at 344.280 kb on + strand at 344.305 kb on - strand at 344.313 kb on - strand at 344.313 kb on - strand at 344.313 kb on - strand at 344.315 kb on - strand at 344.315 kb on - strand at 344.315 kb on - strand at 344.316 kb on + strand at 344.317 kb on - strand at 344.328 kb on + strand at 344.346 kb on - strand at 344.360 kb on + strand at 344.360 kb on + strand at 344.361 kb on - strand at 344.415 kb on + strand at 344.519 kb on - strand, within EX31_RS01535 at 344.519 kb on - strand, within EX31_RS01535 at 344.521 kb on + strand, within EX31_RS01535 at 344.522 kb on - strand, within EX31_RS01535 at 344.522 kb on - strand, within EX31_RS01535 at 344.539 kb on + strand, within EX31_RS01535 at 344.539 kb on + strand, within EX31_RS01535 at 344.539 kb on + strand, within EX31_RS01535 at 344.540 kb on - strand, within EX31_RS01535 at 344.547 kb on + strand, within EX31_RS01535 at 344.547 kb on + strand, within EX31_RS01535 at 344.548 kb on - strand, within EX31_RS01535 at 344.572 kb on + strand, within EX31_RS01535 at 344.602 kb on - strand at 344.602 kb on - strand at 344.602 kb on - strand at 344.630 kb on + strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.650 kb on + strand at 344.690 kb on + strand at 344.761 kb on - strand, within EX31_RS25715 at 344.761 kb on - strand, within EX31_RS25715 at 344.799 kb on + strand, within EX31_RS25715 at 344.802 kb on + strand, within EX31_RS25715 at 344.834 kb on - strand, within EX31_RS25715
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 342,698 - -0.3 342,700 + +0.4 342,700 + -0.1 342,701 - -0.1 342,701 - +0.3 342,723 - -0.6 342,762 + -0.3 342,762 + -1.7 342,763 - -0.4 342,763 - +0.6 342,766 + -0.4 342,766 + +0.6 342,766 + -0.1 342,767 - -0.1 342,767 - -1.1 342,767 - +0.1 342,819 - -0.2 342,821 - -0.2 342,821 - +2.0 342,882 + +0.2 342,901 - -0.5 342,904 + -0.0 342,937 + +1.9 342,937 + +1.9 342,937 + +1.5 342,938 - -1.1 342,938 - -0.4 342,938 - -0.5 343,033 + +0.3 343,055 + EX31_RS01530 0.16 +0.3 343,148 - EX31_RS01530 0.53 -1.3 343,204 - EX31_RS01530 0.76 -1.4 343,293 + +1.6 343,361 + +0.0 343,385 - -0.2 343,394 + +0.2 343,394 + -0.4 343,408 - -0.7 343,419 + -0.5 343,439 - -0.7 343,448 + +0.1 343,448 + +0.6 343,522 + -1.0 343,532 + +0.3 343,532 + -0.1 343,533 - -0.4 343,533 - -0.3 343,534 + -0.7 343,534 + -1.7 343,534 + +0.1 343,534 + -0.9 343,534 + -0.2 343,535 - +1.6 343,535 - -0.0 343,535 - +0.9 343,535 - -0.9 343,535 - -1.4 343,538 + +0.5 343,538 + -1.4 343,538 + +0.1 343,539 - +0.4 343,539 - -0.0 343,542 + -0.9 343,542 + -1.2 343,543 - -2.0 343,543 - -0.3 343,574 + -1.2 343,616 - +0.9 343,653 + -0.7 343,654 - -0.2 343,668 + -2.0 343,668 + -0.2 343,669 - +0.7 343,673 + EX31_RS25060 0.10 +0.4 343,673 + EX31_RS25060 0.10 -1.5 343,709 + EX31_RS25060 0.28 -0.5 343,717 + EX31_RS25060 0.32 -1.8 343,717 + EX31_RS25060 0.32 -0.1 343,717 + EX31_RS25060 0.32 +0.3 343,832 + EX31_RS25060 0.90 -0.4 343,832 + EX31_RS25060 0.90 -1.2 343,833 - -0.2 343,833 - -0.6 343,987 + -0.3 343,987 + +0.8 343,988 - -0.0 344,012 + -0.0 344,013 - -0.3 344,013 - +0.1 344,030 - -0.1 344,033 + -0.5 344,034 - +0.5 344,038 + +0.6 344,067 + -1.4 344,068 - -0.5 344,068 - -1.6 344,068 - -1.5 344,068 - -0.0 344,068 - +0.1 344,068 - +0.1 344,068 - -0.0 344,068 - -0.7 344,073 + -0.2 344,074 - -1.1 344,075 + -0.1 344,076 - -1.4 344,076 - +0.0 344,089 + +0.3 344,089 + +0.4 344,090 - +0.2 344,090 - +0.5 344,101 - +0.2 344,138 - -0.3 344,188 + +0.7 344,201 + -0.3 344,227 + +0.2 344,259 + -0.0 344,259 + -0.8 344,259 + +0.3 344,259 + +0.2 344,260 - -0.9 344,264 - +0.1 344,280 + +0.8 344,280 + +1.1 344,305 - +0.6 344,313 - +1.9 344,313 - +0.8 344,313 - -0.3 344,315 - -0.7 344,315 - +0.2 344,315 - -0.6 344,316 + -1.2 344,317 - +0.1 344,328 + -0.6 344,346 - -0.2 344,360 + +0.7 344,360 + +1.1 344,361 - +0.9 344,415 + +0.1 344,519 - EX31_RS01535 0.58 +0.6 344,519 - EX31_RS01535 0.58 +0.8 344,521 + EX31_RS01535 0.59 -0.4 344,522 - EX31_RS01535 0.60 +0.7 344,522 - EX31_RS01535 0.60 +1.1 344,539 + EX31_RS01535 0.69 -0.5 344,539 + EX31_RS01535 0.69 +0.2 344,539 + EX31_RS01535 0.69 -0.6 344,540 - EX31_RS01535 0.69 +0.4 344,547 + EX31_RS01535 0.73 +0.2 344,547 + EX31_RS01535 0.73 -0.6 344,548 - EX31_RS01535 0.73 +1.5 344,572 + EX31_RS01535 0.86 -0.4 344,602 - +0.0 344,602 - -0.5 344,602 - -0.1 344,630 + +0.4 344,636 - +1.2 344,636 - -0.9 344,636 - -0.4 344,636 - -1.1 344,636 - +1.7 344,636 - -0.4 344,650 + -1.4 344,690 + -0.8 344,761 - EX31_RS25715 0.33 -0.1 344,761 - EX31_RS25715 0.33 +0.0 344,799 + EX31_RS25715 0.51 +0.2 344,802 + EX31_RS25715 0.52 -1.5 344,834 - EX31_RS25715 0.67 +0.2
Or see this region's nucleotide sequence