Strain Fitness in Rahnella sp. WP5 around EX31_RS22780

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22775 and EX31_RS22780 are separated by 2 nucleotidesEX31_RS22780 and EX31_RS22785 are separated by 99 nucleotidesEX31_RS22785 and EX31_RS22790 are separated by 10 nucleotidesEX31_RS22790 and EX31_RS22795 overlap by 4 nucleotides EX31_RS22775: EX31_RS22775 - phosphoserine transaminase, at 314,847 to 315,947 _RS22775 EX31_RS22780: EX31_RS22780 - hypothetical protein, at 315,950 to 317,260 _RS22780 EX31_RS22785: EX31_RS22785 - YpfN family protein, at 317,360 to 317,545 _RS22785 EX31_RS22790: EX31_RS22790 - M15 family metallopeptidase, at 317,556 to 318,230 _RS22790 EX31_RS22795: EX31_RS22795 - succinyl-diaminopimelate desuccinylase, at 318,227 to 319,354 _RS22795 Position (kb) 315 316 317 318Strain fitness (log2 ratio) -2 -1 0 1at 315.033 kb on - strand, within EX31_RS22775at 315.082 kb on + strand, within EX31_RS22775at 315.083 kb on - strand, within EX31_RS22775at 315.083 kb on - strand, within EX31_RS22775at 315.113 kb on - strand, within EX31_RS22775at 315.113 kb on - strand, within EX31_RS22775at 315.113 kb on - strand, within EX31_RS22775at 315.129 kb on - strand, within EX31_RS22775at 315.149 kb on + strand, within EX31_RS22775at 315.173 kb on + strand, within EX31_RS22775at 315.205 kb on + strand, within EX31_RS22775at 315.205 kb on + strand, within EX31_RS22775at 315.206 kb on - strand, within EX31_RS22775at 315.206 kb on - strand, within EX31_RS22775at 315.206 kb on - strand, within EX31_RS22775at 315.206 kb on - strand, within EX31_RS22775at 315.217 kb on - strand, within EX31_RS22775at 315.228 kb on - strand, within EX31_RS22775at 315.368 kb on - strand, within EX31_RS22775at 315.368 kb on - strand, within EX31_RS22775at 315.368 kb on - strand, within EX31_RS22775at 315.368 kb on - strand, within EX31_RS22775at 315.368 kb on - strand, within EX31_RS22775at 315.368 kb on - strand, within EX31_RS22775at 315.368 kb on - strand, within EX31_RS22775at 315.499 kb on + strand, within EX31_RS22775at 315.499 kb on + strand, within EX31_RS22775at 315.499 kb on + strand, within EX31_RS22775at 315.500 kb on - strand, within EX31_RS22775at 315.500 kb on - strand, within EX31_RS22775at 315.500 kb on - strand, within EX31_RS22775at 315.500 kb on - strand, within EX31_RS22775at 315.500 kb on - strand, within EX31_RS22775at 315.626 kb on + strand, within EX31_RS22775at 315.627 kb on - strand, within EX31_RS22775at 315.627 kb on - strand, within EX31_RS22775at 315.952 kb on - strandat 315.952 kb on - strandat 315.952 kb on - strandat 316.033 kb on + strandat 316.039 kb on + strandat 316.040 kb on - strandat 316.164 kb on + strand, within EX31_RS22780at 316.185 kb on + strand, within EX31_RS22780at 316.185 kb on + strand, within EX31_RS22780at 316.185 kb on + strand, within EX31_RS22780at 316.185 kb on + strand, within EX31_RS22780at 316.186 kb on - strand, within EX31_RS22780at 316.278 kb on + strand, within EX31_RS22780at 316.278 kb on + strand, within EX31_RS22780at 316.278 kb on + strand, within EX31_RS22780at 316.279 kb on - strand, within EX31_RS22780at 316.296 kb on + strand, within EX31_RS22780at 316.296 kb on + strand, within EX31_RS22780at 316.297 kb on - strand, within EX31_RS22780at 316.327 kb on + strand, within EX31_RS22780at 316.328 kb on - strand, within EX31_RS22780at 316.338 kb on + strand, within EX31_RS22780at 316.339 kb on - strand, within EX31_RS22780at 316.372 kb on + strand, within EX31_RS22780at 316.398 kb on + strand, within EX31_RS22780at 316.398 kb on + strand, within EX31_RS22780at 316.399 kb on - strand, within EX31_RS22780at 316.422 kb on + strand, within EX31_RS22780at 316.422 kb on + strand, within EX31_RS22780at 316.423 kb on - strand, within EX31_RS22780at 316.530 kb on + strand, within EX31_RS22780at 316.530 kb on + strand, within EX31_RS22780at 316.626 kb on - strand, within EX31_RS22780at 316.787 kb on + strand, within EX31_RS22780at 316.787 kb on + strand, within EX31_RS22780at 316.836 kb on + strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.926 kb on - strand, within EX31_RS22780at 316.931 kb on + strand, within EX31_RS22780at 316.932 kb on - strand, within EX31_RS22780at 316.965 kb on + strand, within EX31_RS22780at 316.965 kb on + strand, within EX31_RS22780at 316.966 kb on - strand, within EX31_RS22780at 316.966 kb on - strand, within EX31_RS22780at 316.966 kb on - strand, within EX31_RS22780at 316.966 kb on - strand, within EX31_RS22780at 317.140 kb on + strandat 317.140 kb on + strandat 317.144 kb on + strandat 317.144 kb on + strandat 317.145 kb on - strandat 317.215 kb on + strandat 317.215 kb on + strandat 317.216 kb on - strandat 317.216 kb on - strandat 317.216 kb on - strandat 317.219 kb on + strandat 317.220 kb on - strandat 317.220 kb on - strandat 317.271 kb on - strandat 317.283 kb on + strandat 317.284 kb on - strandat 317.284 kb on - strandat 317.307 kb on + strandat 317.324 kb on - strandat 317.327 kb on - strandat 317.327 kb on - strandat 317.333 kb on + strandat 317.362 kb on - strandat 317.434 kb on + strand, within EX31_RS22785at 317.489 kb on - strand, within EX31_RS22785at 317.527 kb on - strandat 317.534 kb on - strandat 317.550 kb on + strandat 317.551 kb on - strandat 317.551 kb on - strandat 317.557 kb on + strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.771 kb on - strand, within EX31_RS22790at 317.771 kb on - strand, within EX31_RS22790at 317.781 kb on - strand, within EX31_RS22790at 317.781 kb on - strand, within EX31_RS22790at 318.005 kb on + strand, within EX31_RS22790at 318.006 kb on - strand, within EX31_RS22790at 318.006 kb on - strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.012 kb on + strand, within EX31_RS22790at 318.013 kb on - strand, within EX31_RS22790at 318.237 kb on - strandat 318.237 kb on - strandat 318.237 kb on - strandat 318.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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315,033 - EX31_RS22775 0.17 +0.1
315,082 + EX31_RS22775 0.21 -2.0
315,083 - EX31_RS22775 0.21 +0.4
315,083 - EX31_RS22775 0.21 +0.7
315,113 - EX31_RS22775 0.24 -0.1
315,113 - EX31_RS22775 0.24 +0.5
315,113 - EX31_RS22775 0.24 +0.5
315,129 - EX31_RS22775 0.26 +0.5
315,149 + EX31_RS22775 0.27 -0.1
315,173 + EX31_RS22775 0.30 -0.7
315,205 + EX31_RS22775 0.33 -1.0
315,205 + EX31_RS22775 0.33 +0.1
315,206 - EX31_RS22775 0.33 +1.3
315,206 - EX31_RS22775 0.33 -0.1
315,206 - EX31_RS22775 0.33 +0.9
315,206 - EX31_RS22775 0.33 -0.0
315,217 - EX31_RS22775 0.34 +0.1
315,228 - EX31_RS22775 0.35 +0.3
315,368 - EX31_RS22775 0.47 +1.2
315,368 - EX31_RS22775 0.47 -1.2
315,368 - EX31_RS22775 0.47 +0.2
315,368 - EX31_RS22775 0.47 -0.3
315,368 - EX31_RS22775 0.47 +1.1
315,368 - EX31_RS22775 0.47 +0.5
315,368 - EX31_RS22775 0.47 +0.1
315,499 + EX31_RS22775 0.59 +0.6
315,499 + EX31_RS22775 0.59 +0.2
315,499 + EX31_RS22775 0.59 -0.5
315,500 - EX31_RS22775 0.59 -0.3
315,500 - EX31_RS22775 0.59 +0.1
315,500 - EX31_RS22775 0.59 +0.2
315,500 - EX31_RS22775 0.59 -0.5
315,500 - EX31_RS22775 0.59 -1.6
315,626 + EX31_RS22775 0.71 +0.8
315,627 - EX31_RS22775 0.71 +0.1
315,627 - EX31_RS22775 0.71 +0.3
315,952 - +0.1
315,952 - -0.2
315,952 - +0.2
316,033 + -0.4
316,039 + -0.9
316,040 - +0.9
316,164 + EX31_RS22780 0.16 -0.6
316,185 + EX31_RS22780 0.18 +0.7
316,185 + EX31_RS22780 0.18 -1.2
316,185 + EX31_RS22780 0.18 -0.0
316,185 + EX31_RS22780 0.18 -1.1
316,186 - EX31_RS22780 0.18 -0.6
316,278 + EX31_RS22780 0.25 -2.0
316,278 + EX31_RS22780 0.25 -0.2
316,278 + EX31_RS22780 0.25 -0.8
316,279 - EX31_RS22780 0.25 -0.5
316,296 + EX31_RS22780 0.26 +0.5
316,296 + EX31_RS22780 0.26 +1.2
316,297 - EX31_RS22780 0.26 +1.0
316,327 + EX31_RS22780 0.29 -0.5
316,328 - EX31_RS22780 0.29 -0.1
316,338 + EX31_RS22780 0.30 -1.9
316,339 - EX31_RS22780 0.30 -1.4
316,372 + EX31_RS22780 0.32 -0.4
316,398 + EX31_RS22780 0.34 -0.1
316,398 + EX31_RS22780 0.34 -0.6
316,399 - EX31_RS22780 0.34 +0.3
316,422 + EX31_RS22780 0.36 -0.1
316,422 + EX31_RS22780 0.36 -0.1
316,423 - EX31_RS22780 0.36 -0.3
316,530 + EX31_RS22780 0.44 +0.7
316,530 + EX31_RS22780 0.44 -0.7
316,626 - EX31_RS22780 0.52 -0.5
316,787 + EX31_RS22780 0.64 +0.1
316,787 + EX31_RS22780 0.64 +0.5
316,836 + EX31_RS22780 0.68 -0.9
316,837 - EX31_RS22780 0.68 -0.6
316,837 - EX31_RS22780 0.68 +0.0
316,837 - EX31_RS22780 0.68 -0.9
316,837 - EX31_RS22780 0.68 -0.2
316,837 - EX31_RS22780 0.68 +0.1
316,837 - EX31_RS22780 0.68 -0.3
316,837 - EX31_RS22780 0.68 -1.9
316,926 - EX31_RS22780 0.74 -0.8
316,931 + EX31_RS22780 0.75 -1.6
316,932 - EX31_RS22780 0.75 -0.3
316,965 + EX31_RS22780 0.77 -0.6
316,965 + EX31_RS22780 0.77 +0.1
316,966 - EX31_RS22780 0.77 -0.7
316,966 - EX31_RS22780 0.77 -0.1
316,966 - EX31_RS22780 0.77 -0.1
316,966 - EX31_RS22780 0.77 -0.5
317,140 + -0.6
317,140 + +0.3
317,144 + +0.2
317,144 + +0.2
317,145 - -0.6
317,215 + +0.7
317,215 + +1.3
317,216 - -0.2
317,216 - -0.2
317,216 - -0.0
317,219 + -1.2
317,220 - -0.9
317,220 - -0.8
317,271 - +0.4
317,283 + -2.0
317,284 - -1.3
317,284 - +0.1
317,307 + +0.2
317,324 - +1.2
317,327 - -1.1
317,327 - -0.4
317,333 + +0.1
317,362 - +0.9
317,434 + EX31_RS22785 0.40 -0.3
317,489 - EX31_RS22785 0.69 -0.2
317,527 - -0.1
317,534 - +0.1
317,550 + -1.3
317,551 - -0.5
317,551 - -0.2
317,557 + -2.0
317,558 - -1.3
317,558 - +0.8
317,558 - +0.4
317,558 - +0.1
317,558 - +0.3
317,771 - EX31_RS22790 0.32 +0.7
317,771 - EX31_RS22790 0.32 -0.1
317,781 - EX31_RS22790 0.33 -0.2
317,781 - EX31_RS22790 0.33 -0.3
318,005 + EX31_RS22790 0.67 +0.4
318,006 - EX31_RS22790 0.67 +0.0
318,006 - EX31_RS22790 0.67 +0.0
318,009 + EX31_RS22790 0.67 -1.1
318,009 + EX31_RS22790 0.67 -1.1
318,009 + EX31_RS22790 0.67 +0.5
318,009 + EX31_RS22790 0.67 +0.2
318,009 + EX31_RS22790 0.67 -0.9
318,010 - EX31_RS22790 0.67 -0.1
318,010 - EX31_RS22790 0.67 +0.8
318,010 - EX31_RS22790 0.67 -0.4
318,010 - EX31_RS22790 0.67 +0.0
318,010 - EX31_RS22790 0.67 -0.6
318,010 - EX31_RS22790 0.67 +1.4
318,010 - EX31_RS22790 0.67 +0.3
318,010 - EX31_RS22790 0.67 -0.0
318,010 - EX31_RS22790 0.67 -1.0
318,010 - EX31_RS22790 0.67 +0.6
318,010 - EX31_RS22790 0.67 +0.0
318,012 + EX31_RS22790 0.68 -0.5
318,013 - EX31_RS22790 0.68 -1.0
318,237 - -0.5
318,237 - -1.0
318,237 - -0.2
318,237 - -0.4

Or see this region's nucleotide sequence