Strain Fitness in Rahnella sp. WP5 around EX31_RS18945

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18940 and EX31_RS18945 are separated by 55 nucleotidesEX31_RS18945 and EX31_RS18950 are separated by 375 nucleotides EX31_RS18940: EX31_RS18940 - glycosyltransferase family 61 protein, at 373,812 to 374,921 _RS18940 EX31_RS18945: EX31_RS18945 - CatB-related O-acetyltransferase, at 374,977 to 375,621 _RS18945 EX31_RS18950: EX31_RS18950 - capsular biosynthesis protein, at 375,997 to 377,163 _RS18950 Position (kb) 374 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1at 373.991 kb on + strand, within EX31_RS18940at 373.991 kb on + strand, within EX31_RS18940at 373.992 kb on - strand, within EX31_RS18940at 373.996 kb on - strand, within EX31_RS18940at 374.103 kb on + strand, within EX31_RS18940at 374.291 kb on + strand, within EX31_RS18940at 374.352 kb on + strand, within EX31_RS18940at 374.379 kb on - strand, within EX31_RS18940at 374.509 kb on + strand, within EX31_RS18940at 374.646 kb on - strand, within EX31_RS18940at 374.646 kb on - strand, within EX31_RS18940at 374.659 kb on + strand, within EX31_RS18940at 374.675 kb on + strand, within EX31_RS18940at 374.676 kb on - strand, within EX31_RS18940at 374.676 kb on - strand, within EX31_RS18940at 374.689 kb on - strand, within EX31_RS18940at 374.848 kb on - strandat 374.892 kb on + strandat 374.972 kb on + strandat 374.973 kb on - strandat 375.005 kb on - strandat 375.020 kb on + strandat 375.021 kb on - strandat 375.021 kb on - strandat 375.021 kb on - strandat 375.077 kb on - strand, within EX31_RS18945at 375.139 kb on + strand, within EX31_RS18945at 375.155 kb on - strand, within EX31_RS18945at 375.155 kb on - strand, within EX31_RS18945at 375.156 kb on + strand, within EX31_RS18945at 375.259 kb on - strand, within EX31_RS18945at 375.259 kb on - strand, within EX31_RS18945at 375.263 kb on - strand, within EX31_RS18945at 375.277 kb on - strand, within EX31_RS18945at 375.341 kb on + strand, within EX31_RS18945at 375.345 kb on + strand, within EX31_RS18945at 375.436 kb on - strand, within EX31_RS18945at 375.436 kb on - strand, within EX31_RS18945at 375.462 kb on - strand, within EX31_RS18945at 375.462 kb on - strand, within EX31_RS18945at 375.622 kb on - strandat 375.641 kb on - strandat 375.647 kb on - strandat 375.647 kb on - strandat 375.647 kb on - strandat 375.647 kb on - strandat 375.747 kb on - strandat 375.747 kb on - strandat 375.747 kb on - strandat 375.747 kb on - strandat 375.749 kb on - strandat 375.749 kb on - strandat 375.819 kb on - strandat 375.845 kb on - strandat 375.934 kb on + strandat 375.967 kb on - strandat 375.988 kb on - strandat 375.991 kb on - strandat 376.002 kb on - strandat 376.034 kb on + strandat 376.035 kb on - strandat 376.051 kb on - strandat 376.072 kb on - strandat 376.114 kb on - strand, within EX31_RS18950at 376.114 kb on - strand, within EX31_RS18950at 376.114 kb on - strand, within EX31_RS18950at 376.123 kb on - strand, within EX31_RS18950at 376.130 kb on + strand, within EX31_RS18950at 376.131 kb on - strand, within EX31_RS18950at 376.165 kb on - strand, within EX31_RS18950at 376.171 kb on - strand, within EX31_RS18950at 376.198 kb on - strand, within EX31_RS18950at 376.198 kb on - strand, within EX31_RS18950at 376.204 kb on - strand, within EX31_RS18950at 376.256 kb on + strand, within EX31_RS18950at 376.256 kb on + strand, within EX31_RS18950at 376.257 kb on - strand, within EX31_RS18950at 376.257 kb on - strand, within EX31_RS18950at 376.257 kb on - strand, within EX31_RS18950at 376.257 kb on - strand, within EX31_RS18950at 376.262 kb on - strand, within EX31_RS18950at 376.314 kb on - strand, within EX31_RS18950at 376.316 kb on - strand, within EX31_RS18950at 376.358 kb on + strand, within EX31_RS18950at 376.359 kb on - strand, within EX31_RS18950at 376.359 kb on - strand, within EX31_RS18950at 376.359 kb on - strand, within EX31_RS18950at 376.359 kb on - strand, within EX31_RS18950at 376.409 kb on + strand, within EX31_RS18950at 376.409 kb on + strand, within EX31_RS18950at 376.410 kb on - strand, within EX31_RS18950at 376.410 kb on - strand, within EX31_RS18950at 376.410 kb on - strand, within EX31_RS18950at 376.410 kb on - strand, within EX31_RS18950at 376.458 kb on + strand, within EX31_RS18950at 376.459 kb on - strand, within EX31_RS18950at 376.459 kb on - strand, within EX31_RS18950at 376.459 kb on - strand, within EX31_RS18950at 376.459 kb on - strand, within EX31_RS18950at 376.460 kb on + strand, within EX31_RS18950at 376.460 kb on + strand, within EX31_RS18950at 376.460 kb on + strand, within EX31_RS18950at 376.460 kb on + strand, within EX31_RS18950at 376.460 kb on + strand, within EX31_RS18950at 376.461 kb on - strand, within EX31_RS18950at 376.461 kb on - strand, within EX31_RS18950at 376.461 kb on - strand, within EX31_RS18950at 376.461 kb on - strand, within EX31_RS18950at 376.461 kb on - strand, within EX31_RS18950at 376.461 kb on - strand, within EX31_RS18950at 376.461 kb on - strand, within EX31_RS18950at 376.462 kb on + strand, within EX31_RS18950at 376.462 kb on + strand, within EX31_RS18950at 376.463 kb on - strand, within EX31_RS18950at 376.463 kb on - strand, within EX31_RS18950at 376.463 kb on - strand, within EX31_RS18950at 376.463 kb on - strand, within EX31_RS18950at 376.463 kb on - strand, within EX31_RS18950at 376.463 kb on - strand, within EX31_RS18950at 376.463 kb on - strand, within EX31_RS18950at 376.463 kb on - strand, within EX31_RS18950at 376.542 kb on - strand, within EX31_RS18950at 376.587 kb on - strand, within EX31_RS18950

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
373,991 + EX31_RS18940 0.16 +0.4
373,991 + EX31_RS18940 0.16 -0.3
373,992 - EX31_RS18940 0.16 -1.2
373,996 - EX31_RS18940 0.17 -0.9
374,103 + EX31_RS18940 0.26 +0.1
374,291 + EX31_RS18940 0.43 -0.7
374,352 + EX31_RS18940 0.49 -3.3
374,379 - EX31_RS18940 0.51 -1.0
374,509 + EX31_RS18940 0.63 -0.8
374,646 - EX31_RS18940 0.75 +0.7
374,646 - EX31_RS18940 0.75 -1.6
374,659 + EX31_RS18940 0.76 +0.6
374,675 + EX31_RS18940 0.78 -0.2
374,676 - EX31_RS18940 0.78 -1.5
374,676 - EX31_RS18940 0.78 -1.1
374,689 - EX31_RS18940 0.79 +0.3
374,848 - +0.3
374,892 + -0.8
374,972 + -0.4
374,973 - +0.1
375,005 - -0.7
375,020 + -2.0
375,021 - -0.3
375,021 - +1.1
375,021 - +0.7
375,077 - EX31_RS18945 0.16 -0.6
375,139 + EX31_RS18945 0.25 -1.0
375,155 - EX31_RS18945 0.28 -0.7
375,155 - EX31_RS18945 0.28 +0.0
375,156 + EX31_RS18945 0.28 -2.3
375,259 - EX31_RS18945 0.44 -0.7
375,259 - EX31_RS18945 0.44 +0.2
375,263 - EX31_RS18945 0.44 -0.3
375,277 - EX31_RS18945 0.47 -0.8
375,341 + EX31_RS18945 0.56 -0.1
375,345 + EX31_RS18945 0.57 +0.5
375,436 - EX31_RS18945 0.71 -1.4
375,436 - EX31_RS18945 0.71 -0.1
375,462 - EX31_RS18945 0.75 -1.7
375,462 - EX31_RS18945 0.75 +0.6
375,622 - -0.5
375,641 - +0.5
375,647 - +0.0
375,647 - -1.5
375,647 - -0.2
375,647 - -0.4
375,747 - -1.0
375,747 - +0.3
375,747 - +0.1
375,747 - +1.7
375,749 - -0.4
375,749 - +0.2
375,819 - +0.1
375,845 - -1.5
375,934 + +0.0
375,967 - -0.7
375,988 - -1.2
375,991 - +0.1
376,002 - -0.1
376,034 + -0.3
376,035 - -1.5
376,051 - +0.8
376,072 - -2.1
376,114 - EX31_RS18950 0.10 -0.1
376,114 - EX31_RS18950 0.10 -1.3
376,114 - EX31_RS18950 0.10 -0.2
376,123 - EX31_RS18950 0.11 +1.1
376,130 + EX31_RS18950 0.11 +0.2
376,131 - EX31_RS18950 0.11 -0.3
376,165 - EX31_RS18950 0.14 +0.3
376,171 - EX31_RS18950 0.15 -2.4
376,198 - EX31_RS18950 0.17 -0.4
376,198 - EX31_RS18950 0.17 +0.3
376,204 - EX31_RS18950 0.18 -0.8
376,256 + EX31_RS18950 0.22 -1.1
376,256 + EX31_RS18950 0.22 -1.0
376,257 - EX31_RS18950 0.22 -0.0
376,257 - EX31_RS18950 0.22 +0.8
376,257 - EX31_RS18950 0.22 -0.3
376,257 - EX31_RS18950 0.22 -1.0
376,262 - EX31_RS18950 0.23 -1.6
376,314 - EX31_RS18950 0.27 +1.2
376,316 - EX31_RS18950 0.27 -1.2
376,358 + EX31_RS18950 0.31 +0.2
376,359 - EX31_RS18950 0.31 +0.6
376,359 - EX31_RS18950 0.31 -1.0
376,359 - EX31_RS18950 0.31 +0.8
376,359 - EX31_RS18950 0.31 -0.4
376,409 + EX31_RS18950 0.35 +0.7
376,409 + EX31_RS18950 0.35 +0.6
376,410 - EX31_RS18950 0.35 -0.3
376,410 - EX31_RS18950 0.35 +0.3
376,410 - EX31_RS18950 0.35 +0.5
376,410 - EX31_RS18950 0.35 -0.7
376,458 + EX31_RS18950 0.40 +0.4
376,459 - EX31_RS18950 0.40 -0.2
376,459 - EX31_RS18950 0.40 +0.6
376,459 - EX31_RS18950 0.40 -0.4
376,459 - EX31_RS18950 0.40 +0.4
376,460 + EX31_RS18950 0.40 +0.2
376,460 + EX31_RS18950 0.40 -0.1
376,460 + EX31_RS18950 0.40 -0.3
376,460 + EX31_RS18950 0.40 +0.0
376,460 + EX31_RS18950 0.40 -0.7
376,461 - EX31_RS18950 0.40 -0.1
376,461 - EX31_RS18950 0.40 +0.2
376,461 - EX31_RS18950 0.40 -0.4
376,461 - EX31_RS18950 0.40 -0.6
376,461 - EX31_RS18950 0.40 -2.0
376,461 - EX31_RS18950 0.40 -0.6
376,461 - EX31_RS18950 0.40 -0.3
376,462 + EX31_RS18950 0.40 -1.2
376,462 + EX31_RS18950 0.40 -0.6
376,463 - EX31_RS18950 0.40 -0.1
376,463 - EX31_RS18950 0.40 -1.0
376,463 - EX31_RS18950 0.40 -0.8
376,463 - EX31_RS18950 0.40 -0.4
376,463 - EX31_RS18950 0.40 +0.8
376,463 - EX31_RS18950 0.40 +0.6
376,463 - EX31_RS18950 0.40 -0.2
376,463 - EX31_RS18950 0.40 +0.1
376,542 - EX31_RS18950 0.47 -0.3
376,587 - EX31_RS18950 0.51 +0.9

Or see this region's nucleotide sequence