Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18035 and EX31_RS18040 are separated by 357 nucleotides EX31_RS18040 and EX31_RS18045 are separated by 109 nucleotides EX31_RS18045 and EX31_RS18050 are separated by 210 nucleotides
EX31_RS18035: EX31_RS18035 - cell division inhibitor SulA, at 165,375 to 165,881
_RS18035
EX31_RS18040: EX31_RS18040 - porin OmpA, at 166,239 to 167,315
_RS18040
EX31_RS18045: EX31_RS18045 - macrodomain Ter protein MatP, at 167,425 to 167,886
_RS18045
EX31_RS18050: EX31_RS18050 - Lon protease family protein, at 168,097 to 169,863
_RS18050
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.254 kb on - strand at 165.254 kb on - strand at 165.254 kb on - strand at 165.294 kb on + strand at 165.295 kb on - strand at 165.345 kb on - strand at 165.366 kb on + strand at 165.366 kb on + strand at 165.366 kb on + strand at 165.367 kb on - strand at 165.367 kb on - strand at 165.388 kb on - strand at 165.393 kb on - strand at 165.408 kb on - strand at 165.446 kb on + strand, within EX31_RS18035 at 165.446 kb on + strand, within EX31_RS18035 at 165.446 kb on + strand, within EX31_RS18035 at 165.446 kb on + strand, within EX31_RS18035 at 165.446 kb on + strand, within EX31_RS18035 at 165.447 kb on - strand, within EX31_RS18035 at 165.447 kb on - strand, within EX31_RS18035 at 165.447 kb on - strand, within EX31_RS18035 at 165.447 kb on - strand, within EX31_RS18035 at 165.447 kb on - strand, within EX31_RS18035 at 165.447 kb on - strand, within EX31_RS18035 at 165.464 kb on + strand, within EX31_RS18035 at 165.489 kb on + strand, within EX31_RS18035 at 165.489 kb on + strand, within EX31_RS18035 at 165.490 kb on - strand, within EX31_RS18035 at 165.490 kb on - strand, within EX31_RS18035 at 165.520 kb on + strand, within EX31_RS18035 at 165.520 kb on + strand, within EX31_RS18035 at 165.520 kb on + strand, within EX31_RS18035 at 165.520 kb on + strand, within EX31_RS18035 at 165.520 kb on + strand, within EX31_RS18035 at 165.520 kb on + strand, within EX31_RS18035 at 165.521 kb on - strand, within EX31_RS18035 at 165.521 kb on - strand, within EX31_RS18035 at 165.521 kb on - strand, within EX31_RS18035 at 165.524 kb on - strand, within EX31_RS18035 at 165.607 kb on + strand, within EX31_RS18035 at 165.607 kb on + strand, within EX31_RS18035 at 165.633 kb on - strand, within EX31_RS18035 at 165.656 kb on + strand, within EX31_RS18035 at 165.656 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.708 kb on + strand, within EX31_RS18035 at 165.709 kb on - strand, within EX31_RS18035 at 165.709 kb on - strand, within EX31_RS18035 at 165.709 kb on - strand, within EX31_RS18035 at 165.709 kb on - strand, within EX31_RS18035 at 165.709 kb on - strand, within EX31_RS18035 at 165.747 kb on - strand, within EX31_RS18035 at 165.793 kb on - strand, within EX31_RS18035 at 165.879 kb on + strand at 165.879 kb on + strand at 165.921 kb on + strand at 165.939 kb on - strand at 165.981 kb on + strand at 166.073 kb on - strand at 166.091 kb on + strand at 166.098 kb on + strand at 166.098 kb on + strand at 166.098 kb on + strand at 166.099 kb on - strand at 166.099 kb on - strand at 166.099 kb on - strand at 166.130 kb on + strand at 166.130 kb on + strand at 166.158 kb on + strand at 166.190 kb on + strand at 166.199 kb on + strand at 166.214 kb on + strand at 166.214 kb on + strand at 166.215 kb on - strand at 166.253 kb on + strand at 166.261 kb on + strand at 166.313 kb on + strand at 166.313 kb on + strand at 166.313 kb on + strand at 166.323 kb on + strand at 166.323 kb on + strand at 166.334 kb on + strand at 166.353 kb on + strand, within EX31_RS18040 at 166.380 kb on + strand, within EX31_RS18040 at 166.458 kb on + strand, within EX31_RS18040 at 166.458 kb on + strand, within EX31_RS18040 at 166.458 kb on + strand, within EX31_RS18040 at 166.479 kb on + strand, within EX31_RS18040 at 166.496 kb on + strand, within EX31_RS18040 at 166.503 kb on + strand, within EX31_RS18040 at 166.516 kb on + strand, within EX31_RS18040 at 166.516 kb on + strand, within EX31_RS18040 at 166.516 kb on + strand, within EX31_RS18040 at 166.516 kb on + strand, within EX31_RS18040 at 166.516 kb on + strand, within EX31_RS18040 at 166.596 kb on + strand, within EX31_RS18040 at 166.596 kb on + strand, within EX31_RS18040 at 166.596 kb on + strand, within EX31_RS18040 at 166.596 kb on + strand, within EX31_RS18040 at 166.613 kb on + strand, within EX31_RS18040 at 166.640 kb on + strand, within EX31_RS18040 at 166.640 kb on + strand, within EX31_RS18040 at 166.669 kb on + strand, within EX31_RS18040 at 166.669 kb on + strand, within EX31_RS18040 at 166.669 kb on + strand, within EX31_RS18040 at 166.669 kb on + strand, within EX31_RS18040 at 166.669 kb on + strand, within EX31_RS18040 at 166.825 kb on + strand, within EX31_RS18040 at 166.998 kb on + strand, within EX31_RS18040 at 167.024 kb on + strand, within EX31_RS18040 at 167.024 kb on + strand, within EX31_RS18040 at 167.024 kb on + strand, within EX31_RS18040 at 167.079 kb on + strand, within EX31_RS18040 at 167.079 kb on + strand, within EX31_RS18040 at 167.079 kb on + strand, within EX31_RS18040 at 167.079 kb on + strand, within EX31_RS18040 at 167.079 kb on + strand, within EX31_RS18040 at 167.079 kb on + strand, within EX31_RS18040 at 167.079 kb on + strand, within EX31_RS18040 at 167.080 kb on - strand, within EX31_RS18040 at 167.116 kb on + strand, within EX31_RS18040 at 167.119 kb on + strand, within EX31_RS18040 at 167.119 kb on + strand, within EX31_RS18040 at 167.119 kb on + strand, within EX31_RS18040 at 167.119 kb on + strand, within EX31_RS18040 at 167.119 kb on + strand, within EX31_RS18040 at 167.124 kb on + strand, within EX31_RS18040 at 167.124 kb on + strand, within EX31_RS18040 at 167.124 kb on + strand, within EX31_RS18040 at 167.131 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.135 kb on + strand, within EX31_RS18040 at 167.141 kb on + strand, within EX31_RS18040 at 167.150 kb on + strand, within EX31_RS18040 at 167.177 kb on + strand, within EX31_RS18040 at 167.177 kb on + strand, within EX31_RS18040 at 167.201 kb on + strand, within EX31_RS18040 at 167.201 kb on + strand, within EX31_RS18040 at 167.201 kb on + strand, within EX31_RS18040 at 167.276 kb on + strand at 167.283 kb on + strand at 167.291 kb on + strand at 167.291 kb on + strand at 167.316 kb on + strand at 167.316 kb on + strand at 167.326 kb on + strand at 167.326 kb on + strand at 167.326 kb on + strand at 167.326 kb on + strand at 167.336 kb on + strand at 167.342 kb on + strand at 167.342 kb on + strand at 167.342 kb on + strand at 167.345 kb on + strand at 167.396 kb on - strand at 167.396 kb on - strand at 167.396 kb on - strand at 167.434 kb on - strand at 167.434 kb on - strand at 167.450 kb on - strand at 167.459 kb on - strand at 167.492 kb on + strand, within EX31_RS18045 at 167.503 kb on - strand, within EX31_RS18045 at 167.600 kb on - strand, within EX31_RS18045 at 167.707 kb on - strand, within EX31_RS18045 at 167.710 kb on - strand, within EX31_RS18045 at 167.838 kb on - strand, within EX31_RS18045 at 167.910 kb on - strand at 167.925 kb on - strand at 167.925 kb on - strand at 167.964 kb on + strand at 168.006 kb on - strand at 168.034 kb on + strand at 168.034 kb on + strand at 168.035 kb on - strand at 168.035 kb on - strand at 168.049 kb on - strand at 168.049 kb on - strand at 168.057 kb on - strand at 168.077 kb on + strand at 168.090 kb on + strand at 168.091 kb on - strand at 168.128 kb on + strand at 168.227 kb on + strand at 168.228 kb on - strand at 168.295 kb on + strand, within EX31_RS18050 at 168.296 kb on - strand, within EX31_RS18050 at 168.306 kb on + strand, within EX31_RS18050 at 168.306 kb on + strand, within EX31_RS18050
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 165,254 - +1.3 165,254 - +0.3 165,254 - +0.7 165,294 + -0.3 165,295 - -0.5 165,345 - -0.9 165,366 + -0.3 165,366 + -0.5 165,366 + +0.5 165,367 - +0.3 165,367 - -2.4 165,388 - +0.7 165,393 - -0.2 165,408 - +0.5 165,446 + EX31_RS18035 0.14 -0.3 165,446 + EX31_RS18035 0.14 -0.6 165,446 + EX31_RS18035 0.14 +1.2 165,446 + EX31_RS18035 0.14 -0.2 165,446 + EX31_RS18035 0.14 +0.3 165,447 - EX31_RS18035 0.14 +0.5 165,447 - EX31_RS18035 0.14 +1.2 165,447 - EX31_RS18035 0.14 +0.5 165,447 - EX31_RS18035 0.14 -1.1 165,447 - EX31_RS18035 0.14 +0.7 165,447 - EX31_RS18035 0.14 +0.1 165,464 + EX31_RS18035 0.18 -0.3 165,489 + EX31_RS18035 0.22 -1.1 165,489 + EX31_RS18035 0.22 -1.3 165,490 - EX31_RS18035 0.23 +0.7 165,490 - EX31_RS18035 0.23 -0.4 165,520 + EX31_RS18035 0.29 -1.0 165,520 + EX31_RS18035 0.29 +1.6 165,520 + EX31_RS18035 0.29 +0.3 165,520 + EX31_RS18035 0.29 -0.0 165,520 + EX31_RS18035 0.29 +0.8 165,520 + EX31_RS18035 0.29 -0.6 165,521 - EX31_RS18035 0.29 +0.2 165,521 - EX31_RS18035 0.29 -0.7 165,521 - EX31_RS18035 0.29 -0.9 165,524 - EX31_RS18035 0.29 +0.7 165,607 + EX31_RS18035 0.46 +0.3 165,607 + EX31_RS18035 0.46 +0.3 165,633 - EX31_RS18035 0.51 +0.1 165,656 + EX31_RS18035 0.55 -0.3 165,656 + EX31_RS18035 0.55 +0.5 165,708 + EX31_RS18035 0.66 +0.3 165,708 + EX31_RS18035 0.66 +0.4 165,708 + EX31_RS18035 0.66 +0.2 165,708 + EX31_RS18035 0.66 +0.4 165,708 + EX31_RS18035 0.66 +1.2 165,708 + EX31_RS18035 0.66 -0.8 165,708 + EX31_RS18035 0.66 +0.2 165,708 + EX31_RS18035 0.66 -1.6 165,708 + EX31_RS18035 0.66 -0.4 165,708 + EX31_RS18035 0.66 +0.0 165,708 + EX31_RS18035 0.66 +0.1 165,709 - EX31_RS18035 0.66 -0.1 165,709 - EX31_RS18035 0.66 +0.7 165,709 - EX31_RS18035 0.66 +0.0 165,709 - EX31_RS18035 0.66 +0.6 165,709 - EX31_RS18035 0.66 -0.8 165,747 - EX31_RS18035 0.73 -1.4 165,793 - EX31_RS18035 0.82 -0.2 165,879 + +0.4 165,879 + +0.2 165,921 + -0.4 165,939 - +0.3 165,981 + +0.4 166,073 - -0.4 166,091 + -0.6 166,098 + +0.6 166,098 + +1.6 166,098 + +0.5 166,099 - -1.4 166,099 - -0.7 166,099 - -0.9 166,130 + +0.7 166,130 + +0.3 166,158 + +0.4 166,190 + +0.2 166,199 + +0.4 166,214 + +0.7 166,214 + -0.4 166,215 - -2.8 166,253 + -1.4 166,261 + -1.1 166,313 + -2.5 166,313 + -1.3 166,313 + -1.0 166,323 + -1.8 166,323 + -1.7 166,334 + -1.4 166,353 + EX31_RS18040 0.11 -1.1 166,380 + EX31_RS18040 0.13 -1.8 166,458 + EX31_RS18040 0.20 -2.5 166,458 + EX31_RS18040 0.20 -0.7 166,458 + EX31_RS18040 0.20 -1.4 166,479 + EX31_RS18040 0.22 -0.5 166,496 + EX31_RS18040 0.24 -1.6 166,503 + EX31_RS18040 0.25 -1.4 166,516 + EX31_RS18040 0.26 -0.1 166,516 + EX31_RS18040 0.26 -0.7 166,516 + EX31_RS18040 0.26 -1.2 166,516 + EX31_RS18040 0.26 -1.5 166,516 + EX31_RS18040 0.26 -1.1 166,596 + EX31_RS18040 0.33 +0.4 166,596 + EX31_RS18040 0.33 -0.8 166,596 + EX31_RS18040 0.33 -0.8 166,596 + EX31_RS18040 0.33 +0.7 166,613 + EX31_RS18040 0.35 -1.7 166,640 + EX31_RS18040 0.37 -1.7 166,640 + EX31_RS18040 0.37 -0.6 166,669 + EX31_RS18040 0.40 -1.2 166,669 + EX31_RS18040 0.40 -0.5 166,669 + EX31_RS18040 0.40 -1.6 166,669 + EX31_RS18040 0.40 -1.1 166,669 + EX31_RS18040 0.40 -1.2 166,825 + EX31_RS18040 0.54 -1.4 166,998 + EX31_RS18040 0.70 -1.1 167,024 + EX31_RS18040 0.73 -1.0 167,024 + EX31_RS18040 0.73 -1.6 167,024 + EX31_RS18040 0.73 +0.4 167,079 + EX31_RS18040 0.78 -1.8 167,079 + EX31_RS18040 0.78 -0.8 167,079 + EX31_RS18040 0.78 -1.7 167,079 + EX31_RS18040 0.78 -0.3 167,079 + EX31_RS18040 0.78 -0.9 167,079 + EX31_RS18040 0.78 -0.5 167,079 + EX31_RS18040 0.78 +0.0 167,080 - EX31_RS18040 0.78 +1.3 167,116 + EX31_RS18040 0.81 -0.0 167,119 + EX31_RS18040 0.82 -2.8 167,119 + EX31_RS18040 0.82 -1.1 167,119 + EX31_RS18040 0.82 -0.5 167,119 + EX31_RS18040 0.82 -2.0 167,119 + EX31_RS18040 0.82 +0.4 167,124 + EX31_RS18040 0.82 -1.4 167,124 + EX31_RS18040 0.82 -0.6 167,124 + EX31_RS18040 0.82 -0.6 167,131 + EX31_RS18040 0.83 -1.2 167,135 + EX31_RS18040 0.83 -2.4 167,135 + EX31_RS18040 0.83 -0.2 167,135 + EX31_RS18040 0.83 -1.5 167,135 + EX31_RS18040 0.83 -1.4 167,135 + EX31_RS18040 0.83 -0.9 167,135 + EX31_RS18040 0.83 -1.3 167,135 + EX31_RS18040 0.83 -1.0 167,135 + EX31_RS18040 0.83 -1.2 167,135 + EX31_RS18040 0.83 -3.4 167,135 + EX31_RS18040 0.83 +0.6 167,135 + EX31_RS18040 0.83 -0.7 167,141 + EX31_RS18040 0.84 -1.0 167,150 + EX31_RS18040 0.85 -0.3 167,177 + EX31_RS18040 0.87 -1.9 167,177 + EX31_RS18040 0.87 +0.4 167,201 + EX31_RS18040 0.89 -1.9 167,201 + EX31_RS18040 0.89 -0.7 167,201 + EX31_RS18040 0.89 -0.4 167,276 + +1.0 167,283 + +1.8 167,291 + +1.1 167,291 + +0.8 167,316 + +1.3 167,316 + +0.8 167,326 + -0.2 167,326 + +0.5 167,326 + +0.5 167,326 + +0.8 167,336 + +2.4 167,342 + +1.2 167,342 + +0.1 167,342 + +0.4 167,345 + +0.3 167,396 - +0.3 167,396 - +0.0 167,396 - +0.3 167,434 - +0.5 167,434 - +0.9 167,450 - -0.5 167,459 - +0.2 167,492 + EX31_RS18045 0.15 -0.9 167,503 - EX31_RS18045 0.17 +0.5 167,600 - EX31_RS18045 0.38 -0.5 167,707 - EX31_RS18045 0.61 +0.1 167,710 - EX31_RS18045 0.62 -0.2 167,838 - EX31_RS18045 0.89 +0.5 167,910 - +0.3 167,925 - -0.6 167,925 - -0.8 167,964 + -0.7 168,006 - -0.1 168,034 + -0.1 168,034 + -1.2 168,035 - +0.1 168,035 - -1.0 168,049 - -0.4 168,049 - -0.6 168,057 - +0.2 168,077 + -1.0 168,090 + -0.1 168,091 - +0.3 168,128 + -0.4 168,227 + -0.3 168,228 - +0.7 168,295 + EX31_RS18050 0.11 -0.8 168,296 - EX31_RS18050 0.11 +0.2 168,306 + EX31_RS18050 0.12 +0.2 168,306 + EX31_RS18050 0.12 +0.5
Or see this region's nucleotide sequence