Strain Fitness in Rahnella sp. WP5 around EX31_RS17495

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17485 and EX31_RS17490 are separated by 46 nucleotidesEX31_RS17490 and EX31_RS17495 are separated by 10 nucleotidesEX31_RS17495 and EX31_RS17500 are separated by 83 nucleotides EX31_RS17485: EX31_RS17485 - ABC transporter substrate-binding protein, at 49,210 to 50,028 _RS17485 EX31_RS17490: EX31_RS17490 - amino acid ABC transporter permease, at 50,075 to 50,788 _RS17490 EX31_RS17495: EX31_RS17495 - amino acid ABC transporter ATP-binding protein, at 50,799 to 51,542 _RS17495 EX31_RS17500: EX31_RS17500 - M20 family metallopeptidase, at 51,626 to 52,789 _RS17500 Position (kb) 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1at 49.909 kb on - strand, within EX31_RS17485at 49.975 kb on + strandat 50.040 kb on + strandat 50.040 kb on + strandat 50.040 kb on + strandat 50.040 kb on + strandat 50.041 kb on - strandat 50.041 kb on - strandat 50.041 kb on - strandat 50.045 kb on - strandat 50.099 kb on + strandat 50.099 kb on + strandat 50.133 kb on + strandat 50.246 kb on + strand, within EX31_RS17490at 50.247 kb on - strand, within EX31_RS17490at 50.247 kb on - strand, within EX31_RS17490at 50.288 kb on - strand, within EX31_RS17490at 50.364 kb on + strand, within EX31_RS17490at 50.364 kb on + strand, within EX31_RS17490at 50.365 kb on - strand, within EX31_RS17490at 50.378 kb on + strand, within EX31_RS17490at 50.378 kb on + strand, within EX31_RS17490at 50.378 kb on + strand, within EX31_RS17490at 50.378 kb on + strand, within EX31_RS17490at 50.378 kb on + strand, within EX31_RS17490at 50.378 kb on + strand, within EX31_RS17490at 50.378 kb on + strand, within EX31_RS17490at 50.378 kb on + strand, within EX31_RS17490at 50.378 kb on + strand, within EX31_RS17490at 50.379 kb on - strand, within EX31_RS17490at 50.379 kb on - strand, within EX31_RS17490at 50.379 kb on - strand, within EX31_RS17490at 50.380 kb on + strand, within EX31_RS17490at 50.380 kb on + strand, within EX31_RS17490at 50.381 kb on - strand, within EX31_RS17490at 50.381 kb on - strand, within EX31_RS17490at 50.394 kb on + strand, within EX31_RS17490at 50.416 kb on - strand, within EX31_RS17490at 50.627 kb on + strand, within EX31_RS17490at 50.657 kb on + strand, within EX31_RS17490at 50.657 kb on + strand, within EX31_RS17490at 50.658 kb on - strand, within EX31_RS17490at 50.679 kb on + strand, within EX31_RS17490at 50.867 kb on + strandat 51.036 kb on - strand, within EX31_RS17495at 51.040 kb on + strand, within EX31_RS17495at 51.062 kb on - strand, within EX31_RS17495at 51.072 kb on + strand, within EX31_RS17495at 51.072 kb on + strand, within EX31_RS17495at 51.073 kb on - strand, within EX31_RS17495at 51.073 kb on - strand, within EX31_RS17495at 51.286 kb on + strand, within EX31_RS17495at 51.286 kb on + strand, within EX31_RS17495at 51.287 kb on - strand, within EX31_RS17495at 51.287 kb on - strand, within EX31_RS17495at 51.287 kb on - strand, within EX31_RS17495at 51.287 kb on - strand, within EX31_RS17495at 51.287 kb on - strand, within EX31_RS17495at 51.287 kb on - strand, within EX31_RS17495at 51.523 kb on + strandat 51.523 kb on + strandat 51.523 kb on + strandat 51.524 kb on - strandat 51.535 kb on + strandat 51.536 kb on - strandat 51.568 kb on + strandat 51.569 kb on - strandat 51.569 kb on - strandat 51.569 kb on - strandat 51.569 kb on - strandat 51.569 kb on - strandat 51.569 kb on - strandat 51.569 kb on - strandat 51.646 kb on + strandat 51.733 kb on + strandat 51.734 kb on - strandat 51.847 kb on + strand, within EX31_RS17500at 51.850 kb on + strand, within EX31_RS17500at 51.929 kb on + strand, within EX31_RS17500at 51.929 kb on + strand, within EX31_RS17500at 51.930 kb on - strand, within EX31_RS17500at 52.080 kb on - strand, within EX31_RS17500at 52.103 kb on - strand, within EX31_RS17500at 52.145 kb on + strand, within EX31_RS17500at 52.145 kb on + strand, within EX31_RS17500at 52.145 kb on + strand, within EX31_RS17500at 52.145 kb on + strand, within EX31_RS17500at 52.145 kb on + strand, within EX31_RS17500at 52.146 kb on - strand, within EX31_RS17500at 52.146 kb on - strand, within EX31_RS17500at 52.146 kb on - strand, within EX31_RS17500at 52.146 kb on - strand, within EX31_RS17500at 52.146 kb on - strand, within EX31_RS17500at 52.167 kb on + strand, within EX31_RS17500at 52.168 kb on - strand, within EX31_RS17500at 52.168 kb on - strand, within EX31_RS17500at 52.168 kb on - strand, within EX31_RS17500at 52.168 kb on - strand, within EX31_RS17500at 52.285 kb on + strand, within EX31_RS17500at 52.285 kb on + strand, within EX31_RS17500at 52.285 kb on + strand, within EX31_RS17500at 52.285 kb on + strand, within EX31_RS17500at 52.286 kb on - strand, within EX31_RS17500at 52.286 kb on - strand, within EX31_RS17500at 52.405 kb on + strand, within EX31_RS17500at 52.405 kb on + strand, within EX31_RS17500at 52.405 kb on + strand, within EX31_RS17500at 52.455 kb on + strand, within EX31_RS17500at 52.505 kb on + strand, within EX31_RS17500at 52.505 kb on + strand, within EX31_RS17500at 52.505 kb on + strand, within EX31_RS17500at 52.505 kb on + strand, within EX31_RS17500at 52.505 kb on + strand, within EX31_RS17500at 52.506 kb on - strand, within EX31_RS17500at 52.506 kb on - strand, within EX31_RS17500

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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49,909 - EX31_RS17485 0.85 -0.8
49,975 + +0.2
50,040 + -0.0
50,040 + +0.5
50,040 + +0.3
50,040 + +0.5
50,041 - +0.9
50,041 - +0.2
50,041 - -0.6
50,045 - +0.5
50,099 + +0.5
50,099 + -0.4
50,133 + -0.2
50,246 + EX31_RS17490 0.24 +0.8
50,247 - EX31_RS17490 0.24 -2.2
50,247 - EX31_RS17490 0.24 -1.6
50,288 - EX31_RS17490 0.30 +0.0
50,364 + EX31_RS17490 0.40 +0.1
50,364 + EX31_RS17490 0.40 -0.8
50,365 - EX31_RS17490 0.41 -3.2
50,378 + EX31_RS17490 0.42 -1.0
50,378 + EX31_RS17490 0.42 +0.4
50,378 + EX31_RS17490 0.42 -0.1
50,378 + EX31_RS17490 0.42 +0.1
50,378 + EX31_RS17490 0.42 -0.0
50,378 + EX31_RS17490 0.42 +0.3
50,378 + EX31_RS17490 0.42 +0.4
50,378 + EX31_RS17490 0.42 +0.2
50,378 + EX31_RS17490 0.42 +0.2
50,379 - EX31_RS17490 0.43 +0.2
50,379 - EX31_RS17490 0.43 -1.1
50,379 - EX31_RS17490 0.43 -0.5
50,380 + EX31_RS17490 0.43 +0.5
50,380 + EX31_RS17490 0.43 -0.3
50,381 - EX31_RS17490 0.43 +0.0
50,381 - EX31_RS17490 0.43 -0.2
50,394 + EX31_RS17490 0.45 -0.0
50,416 - EX31_RS17490 0.48 -0.5
50,627 + EX31_RS17490 0.77 -0.4
50,657 + EX31_RS17490 0.82 +0.7
50,657 + EX31_RS17490 0.82 -0.2
50,658 - EX31_RS17490 0.82 +0.3
50,679 + EX31_RS17490 0.85 -0.3
50,867 + +0.2
51,036 - EX31_RS17495 0.32 -0.9
51,040 + EX31_RS17495 0.32 -0.7
51,062 - EX31_RS17495 0.35 +0.2
51,072 + EX31_RS17495 0.37 +0.1
51,072 + EX31_RS17495 0.37 +1.0
51,073 - EX31_RS17495 0.37 -1.1
51,073 - EX31_RS17495 0.37 -0.5
51,286 + EX31_RS17495 0.65 +0.6
51,286 + EX31_RS17495 0.65 +0.5
51,287 - EX31_RS17495 0.66 -0.6
51,287 - EX31_RS17495 0.66 -0.9
51,287 - EX31_RS17495 0.66 +0.7
51,287 - EX31_RS17495 0.66 -0.9
51,287 - EX31_RS17495 0.66 -1.1
51,287 - EX31_RS17495 0.66 -0.5
51,523 + +0.6
51,523 + -0.3
51,523 + +0.3
51,524 - -0.3
51,535 + +1.0
51,536 - -1.3
51,568 + -0.1
51,569 - +0.0
51,569 - +0.1
51,569 - -0.0
51,569 - +0.7
51,569 - -1.0
51,569 - -0.8
51,569 - -0.0
51,646 + -0.2
51,733 + -1.3
51,734 - -1.7
51,847 + EX31_RS17500 0.19 -1.0
51,850 + EX31_RS17500 0.19 +0.5
51,929 + EX31_RS17500 0.26 +0.5
51,929 + EX31_RS17500 0.26 -0.8
51,930 - EX31_RS17500 0.26 -0.4
52,080 - EX31_RS17500 0.39 -0.2
52,103 - EX31_RS17500 0.41 -0.5
52,145 + EX31_RS17500 0.45 +0.7
52,145 + EX31_RS17500 0.45 +0.6
52,145 + EX31_RS17500 0.45 -0.3
52,145 + EX31_RS17500 0.45 -0.5
52,145 + EX31_RS17500 0.45 +0.4
52,146 - EX31_RS17500 0.45 +0.7
52,146 - EX31_RS17500 0.45 -0.4
52,146 - EX31_RS17500 0.45 -0.0
52,146 - EX31_RS17500 0.45 +0.2
52,146 - EX31_RS17500 0.45 -0.7
52,167 + EX31_RS17500 0.46 -0.3
52,168 - EX31_RS17500 0.47 +0.5
52,168 - EX31_RS17500 0.47 -0.1
52,168 - EX31_RS17500 0.47 -1.5
52,168 - EX31_RS17500 0.47 -0.4
52,285 + EX31_RS17500 0.57 +0.0
52,285 + EX31_RS17500 0.57 +1.2
52,285 + EX31_RS17500 0.57 -0.5
52,285 + EX31_RS17500 0.57 -0.2
52,286 - EX31_RS17500 0.57 -1.0
52,286 - EX31_RS17500 0.57 +1.0
52,405 + EX31_RS17500 0.67 +0.3
52,405 + EX31_RS17500 0.67 +0.9
52,405 + EX31_RS17500 0.67 +0.6
52,455 + EX31_RS17500 0.71 +0.5
52,505 + EX31_RS17500 0.76 -0.2
52,505 + EX31_RS17500 0.76 -0.0
52,505 + EX31_RS17500 0.76 +0.3
52,505 + EX31_RS17500 0.76 -0.6
52,505 + EX31_RS17500 0.76 +0.7
52,506 - EX31_RS17500 0.76 -1.5
52,506 - EX31_RS17500 0.76 -0.4

Or see this region's nucleotide sequence