Strain Fitness in Rahnella sp. WP5 around EX31_RS14695

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS14690 and EX31_RS14695 are separated by 255 nucleotidesEX31_RS14695 and EX31_RS14700 overlap by 4 nucleotidesEX31_RS14700 and EX31_RS14705 are separated by 68 nucleotidesEX31_RS14705 and EX31_RS14710 are separated by 66 nucleotides EX31_RS14690: EX31_RS14690 - helix-turn-helix transcriptional regulator, at 33,140 to 34,003 _RS14690 EX31_RS14695: EX31_RS14695 - lysozyme, at 34,259 to 34,765 _RS14695 EX31_RS14700: EX31_RS14700 - hypothetical protein, at 34,762 to 35,142 _RS14700 EX31_RS14705: EX31_RS14705 - hypothetical protein, at 35,211 to 35,513 _RS14705 EX31_RS14710: EX31_RS14710 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 35,580 to 37,859 _RS14710 Position (kb) 34 35Strain fitness (log2 ratio) -2 -1 0 1at 33.285 kb on + strand, within EX31_RS14690at 33.285 kb on + strand, within EX31_RS14690at 33.285 kb on + strand, within EX31_RS14690at 33.286 kb on - strand, within EX31_RS14690at 33.324 kb on + strand, within EX31_RS14690at 33.324 kb on + strand, within EX31_RS14690at 33.324 kb on + strand, within EX31_RS14690at 33.325 kb on - strand, within EX31_RS14690at 33.325 kb on - strand, within EX31_RS14690at 33.325 kb on - strand, within EX31_RS14690at 33.325 kb on - strand, within EX31_RS14690at 33.325 kb on - strand, within EX31_RS14690at 33.325 kb on - strand, within EX31_RS14690at 33.325 kb on - strand, within EX31_RS14690at 33.334 kb on - strand, within EX31_RS14690at 33.368 kb on + strand, within EX31_RS14690at 33.381 kb on + strand, within EX31_RS14690at 33.381 kb on + strand, within EX31_RS14690at 33.382 kb on - strand, within EX31_RS14690at 33.382 kb on - strand, within EX31_RS14690at 33.382 kb on - strand, within EX31_RS14690at 33.382 kb on - strand, within EX31_RS14690at 33.394 kb on + strand, within EX31_RS14690at 33.394 kb on + strand, within EX31_RS14690at 33.394 kb on + strand, within EX31_RS14690at 33.396 kb on + strand, within EX31_RS14690at 33.397 kb on - strand, within EX31_RS14690at 33.439 kb on - strand, within EX31_RS14690at 33.451 kb on + strand, within EX31_RS14690at 33.451 kb on + strand, within EX31_RS14690at 33.452 kb on - strand, within EX31_RS14690at 33.452 kb on - strand, within EX31_RS14690at 33.453 kb on + strand, within EX31_RS14690at 33.454 kb on - strand, within EX31_RS14690at 33.454 kb on - strand, within EX31_RS14690at 33.562 kb on + strand, within EX31_RS14690at 33.563 kb on - strand, within EX31_RS14690at 33.610 kb on + strand, within EX31_RS14690at 33.610 kb on + strand, within EX31_RS14690at 33.610 kb on + strand, within EX31_RS14690at 33.610 kb on + strand, within EX31_RS14690at 33.610 kb on + strand, within EX31_RS14690at 33.610 kb on + strand, within EX31_RS14690at 33.611 kb on - strand, within EX31_RS14690at 33.611 kb on - strand, within EX31_RS14690at 33.664 kb on + strand, within EX31_RS14690at 33.664 kb on + strand, within EX31_RS14690at 33.694 kb on + strand, within EX31_RS14690at 33.695 kb on - strand, within EX31_RS14690at 33.719 kb on + strand, within EX31_RS14690at 33.720 kb on - strand, within EX31_RS14690at 33.898 kb on - strand, within EX31_RS14690at 33.898 kb on - strand, within EX31_RS14690at 33.936 kb on + strandat 33.936 kb on + strandat 33.968 kb on + strandat 33.969 kb on - strandat 33.969 kb on - strandat 33.969 kb on - strandat 33.977 kb on + strandat 33.977 kb on + strandat 33.978 kb on - strandat 33.978 kb on - strandat 34.012 kb on + strandat 34.013 kb on - strandat 34.013 kb on - strandat 34.156 kb on + strandat 34.157 kb on - strandat 34.238 kb on + strandat 34.278 kb on + strandat 34.278 kb on + strandat 34.320 kb on + strand, within EX31_RS14695at 34.320 kb on + strand, within EX31_RS14695at 34.321 kb on - strand, within EX31_RS14695at 34.321 kb on - strand, within EX31_RS14695at 34.321 kb on - strand, within EX31_RS14695at 34.326 kb on + strand, within EX31_RS14695at 34.327 kb on - strand, within EX31_RS14695at 34.441 kb on + strand, within EX31_RS14695at 34.528 kb on + strand, within EX31_RS14695at 34.529 kb on - strand, within EX31_RS14695at 34.529 kb on - strand, within EX31_RS14695at 34.532 kb on + strand, within EX31_RS14695at 34.533 kb on - strand, within EX31_RS14695at 34.533 kb on - strand, within EX31_RS14695at 34.533 kb on - strand, within EX31_RS14695at 34.533 kb on - strand, within EX31_RS14695at 34.577 kb on + strand, within EX31_RS14695at 34.578 kb on - strand, within EX31_RS14695at 34.578 kb on - strand, within EX31_RS14695at 34.747 kb on + strandat 34.748 kb on - strandat 34.775 kb on + strandat 34.844 kb on + strand, within EX31_RS14700at 34.844 kb on + strand, within EX31_RS14700at 34.844 kb on + strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.845 kb on - strand, within EX31_RS14700at 34.869 kb on + strand, within EX31_RS14700at 34.869 kb on + strand, within EX31_RS14700at 34.869 kb on + strand, within EX31_RS14700at 34.869 kb on + strand, within EX31_RS14700at 34.870 kb on - strand, within EX31_RS14700at 34.870 kb on - strand, within EX31_RS14700at 34.870 kb on - strand, within EX31_RS14700at 34.870 kb on - strand, within EX31_RS14700at 34.920 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.928 kb on + strand, within EX31_RS14700at 34.929 kb on - strand, within EX31_RS14700at 34.929 kb on - strand, within EX31_RS14700at 34.929 kb on - strand, within EX31_RS14700at 34.983 kb on + strand, within EX31_RS14700at 35.137 kb on - strandat 35.205 kb on + strandat 35.206 kb on - strandat 35.255 kb on + strand, within EX31_RS14705at 35.255 kb on + strand, within EX31_RS14705at 35.255 kb on + strand, within EX31_RS14705at 35.280 kb on - strand, within EX31_RS14705at 35.280 kb on - strand, within EX31_RS14705at 35.294 kb on + strand, within EX31_RS14705at 35.323 kb on - strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.380 kb on + strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.381 kb on - strand, within EX31_RS14705at 35.382 kb on + strand, within EX31_RS14705at 35.383 kb on - strand, within EX31_RS14705at 35.383 kb on - strand, within EX31_RS14705at 35.383 kb on - strand, within EX31_RS14705at 35.383 kb on - strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.385 kb on + strand, within EX31_RS14705at 35.386 kb on - strand, within EX31_RS14705at 35.386 kb on - strand, within EX31_RS14705at 35.386 kb on - strand, within EX31_RS14705at 35.472 kb on + strand, within EX31_RS14705at 35.511 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.560 kb on + strandat 35.561 kb on - strandat 35.561 kb on - strandat 35.561 kb on - strandat 35.561 kb on - strandat 35.561 kb on - strandat 35.566 kb on + strandat 35.567 kb on - strandat 35.567 kb on - strandat 35.705 kb on + strandat 35.705 kb on + strandat 35.721 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
33,285 + EX31_RS14690 0.17 -0.1
33,285 + EX31_RS14690 0.17 -0.2
33,285 + EX31_RS14690 0.17 -0.2
33,286 - EX31_RS14690 0.17 +0.5
33,324 + EX31_RS14690 0.21 -0.4
33,324 + EX31_RS14690 0.21 +0.1
33,324 + EX31_RS14690 0.21 +0.5
33,325 - EX31_RS14690 0.21 -0.7
33,325 - EX31_RS14690 0.21 +0.3
33,325 - EX31_RS14690 0.21 -0.0
33,325 - EX31_RS14690 0.21 +0.4
33,325 - EX31_RS14690 0.21 +0.5
33,325 - EX31_RS14690 0.21 +0.8
33,325 - EX31_RS14690 0.21 -0.0
33,334 - EX31_RS14690 0.22 -0.1
33,368 + EX31_RS14690 0.26 +0.4
33,381 + EX31_RS14690 0.28 +1.1
33,381 + EX31_RS14690 0.28 +0.0
33,382 - EX31_RS14690 0.28 +0.4
33,382 - EX31_RS14690 0.28 -0.0
33,382 - EX31_RS14690 0.28 +0.2
33,382 - EX31_RS14690 0.28 -0.1
33,394 + EX31_RS14690 0.29 -0.3
33,394 + EX31_RS14690 0.29 +0.6
33,394 + EX31_RS14690 0.29 -0.6
33,396 + EX31_RS14690 0.30 -1.2
33,397 - EX31_RS14690 0.30 +0.4
33,439 - EX31_RS14690 0.35 -0.1
33,451 + EX31_RS14690 0.36 +0.1
33,451 + EX31_RS14690 0.36 -0.2
33,452 - EX31_RS14690 0.36 -0.1
33,452 - EX31_RS14690 0.36 -0.8
33,453 + EX31_RS14690 0.36 -0.4
33,454 - EX31_RS14690 0.36 +0.1
33,454 - EX31_RS14690 0.36 -0.0
33,562 + EX31_RS14690 0.49 -0.7
33,563 - EX31_RS14690 0.49 -0.6
33,610 + EX31_RS14690 0.54 +0.3
33,610 + EX31_RS14690 0.54 -1.3
33,610 + EX31_RS14690 0.54 -0.4
33,610 + EX31_RS14690 0.54 -0.1
33,610 + EX31_RS14690 0.54 -0.5
33,610 + EX31_RS14690 0.54 -0.5
33,611 - EX31_RS14690 0.55 +0.4
33,611 - EX31_RS14690 0.55 -0.4
33,664 + EX31_RS14690 0.61 -1.3
33,664 + EX31_RS14690 0.61 -1.0
33,694 + EX31_RS14690 0.64 +0.7
33,695 - EX31_RS14690 0.64 -0.3
33,719 + EX31_RS14690 0.67 +0.3
33,720 - EX31_RS14690 0.67 +0.4
33,898 - EX31_RS14690 0.88 +1.4
33,898 - EX31_RS14690 0.88 +0.4
33,936 + -0.0
33,936 + -0.7
33,968 + +0.5
33,969 - +0.2
33,969 - +0.2
33,969 - -0.1
33,977 + -0.4
33,977 + -0.4
33,978 - -0.0
33,978 - +0.4
34,012 + -0.1
34,013 - -0.3
34,013 - -0.6
34,156 + -0.4
34,157 - -0.0
34,238 + -0.4
34,278 + -0.7
34,278 + -0.0
34,320 + EX31_RS14695 0.12 -0.5
34,320 + EX31_RS14695 0.12 -0.5
34,321 - EX31_RS14695 0.12 -0.9
34,321 - EX31_RS14695 0.12 +0.9
34,321 - EX31_RS14695 0.12 -0.8
34,326 + EX31_RS14695 0.13 -0.1
34,327 - EX31_RS14695 0.13 -0.2
34,441 + EX31_RS14695 0.36 +0.3
34,528 + EX31_RS14695 0.53 -0.4
34,529 - EX31_RS14695 0.53 -0.6
34,529 - EX31_RS14695 0.53 +0.9
34,532 + EX31_RS14695 0.54 -0.6
34,533 - EX31_RS14695 0.54 -0.7
34,533 - EX31_RS14695 0.54 +0.1
34,533 - EX31_RS14695 0.54 -0.1
34,533 - EX31_RS14695 0.54 -0.7
34,577 + EX31_RS14695 0.63 -0.1
34,578 - EX31_RS14695 0.63 +0.3
34,578 - EX31_RS14695 0.63 +0.3
34,747 + -1.1
34,748 - -0.6
34,775 + -1.1
34,844 + EX31_RS14700 0.22 -0.4
34,844 + EX31_RS14700 0.22 +0.2
34,844 + EX31_RS14700 0.22 -0.7
34,845 - EX31_RS14700 0.22 -0.2
34,845 - EX31_RS14700 0.22 -0.6
34,845 - EX31_RS14700 0.22 -0.9
34,845 - EX31_RS14700 0.22 +0.0
34,845 - EX31_RS14700 0.22 -0.0
34,869 + EX31_RS14700 0.28 -0.2
34,869 + EX31_RS14700 0.28 -0.5
34,869 + EX31_RS14700 0.28 -0.8
34,869 + EX31_RS14700 0.28 +1.1
34,870 - EX31_RS14700 0.28 -0.1
34,870 - EX31_RS14700 0.28 -1.3
34,870 - EX31_RS14700 0.28 -0.1
34,870 - EX31_RS14700 0.28 +0.2
34,920 + EX31_RS14700 0.41 -0.1
34,928 + EX31_RS14700 0.44 +0.1
34,928 + EX31_RS14700 0.44 -0.4
34,928 + EX31_RS14700 0.44 -0.7
34,928 + EX31_RS14700 0.44 -0.5
34,928 + EX31_RS14700 0.44 -0.9
34,928 + EX31_RS14700 0.44 +0.2
34,928 + EX31_RS14700 0.44 +0.2
34,929 - EX31_RS14700 0.44 -0.3
34,929 - EX31_RS14700 0.44 +1.0
34,929 - EX31_RS14700 0.44 -0.1
34,983 + EX31_RS14700 0.58 -0.3
35,137 - -0.1
35,205 + -0.4
35,206 - +0.3
35,255 + EX31_RS14705 0.15 +0.1
35,255 + EX31_RS14705 0.15 -0.0
35,255 + EX31_RS14705 0.15 +0.2
35,280 - EX31_RS14705 0.23 +0.1
35,280 - EX31_RS14705 0.23 -0.0
35,294 + EX31_RS14705 0.27 -0.2
35,323 - EX31_RS14705 0.37 -0.7
35,380 + EX31_RS14705 0.56 -0.5
35,380 + EX31_RS14705 0.56 +0.5
35,380 + EX31_RS14705 0.56 -0.2
35,380 + EX31_RS14705 0.56 +1.0
35,380 + EX31_RS14705 0.56 -0.5
35,380 + EX31_RS14705 0.56 +0.2
35,380 + EX31_RS14705 0.56 +0.2
35,380 + EX31_RS14705 0.56 -0.5
35,380 + EX31_RS14705 0.56 -0.0
35,381 - EX31_RS14705 0.56 -0.2
35,381 - EX31_RS14705 0.56 -0.9
35,381 - EX31_RS14705 0.56 +0.7
35,381 - EX31_RS14705 0.56 +0.6
35,381 - EX31_RS14705 0.56 +0.6
35,381 - EX31_RS14705 0.56 -0.3
35,382 + EX31_RS14705 0.56 +0.7
35,383 - EX31_RS14705 0.57 +0.2
35,383 - EX31_RS14705 0.57 -0.1
35,383 - EX31_RS14705 0.57 -0.6
35,383 - EX31_RS14705 0.57 +0.2
35,385 + EX31_RS14705 0.57 +0.6
35,385 + EX31_RS14705 0.57 -0.3
35,385 + EX31_RS14705 0.57 -0.6
35,385 + EX31_RS14705 0.57 +0.0
35,385 + EX31_RS14705 0.57 +0.5
35,386 - EX31_RS14705 0.58 -0.5
35,386 - EX31_RS14705 0.58 -0.6
35,386 - EX31_RS14705 0.58 +0.0
35,472 + EX31_RS14705 0.86 +0.6
35,511 + +0.5
35,560 + -1.0
35,560 + -0.6
35,560 + -1.4
35,560 + -0.9
35,560 + +0.1
35,560 + -0.9
35,560 + +0.1
35,561 - -0.0
35,561 - +0.4
35,561 - -0.3
35,561 - -1.3
35,561 - -0.9
35,566 + -0.3
35,567 - +0.9
35,567 - +0.6
35,705 + -1.9
35,705 + -2.0
35,721 - -2.4

Or see this region's nucleotide sequence