Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14150 and EX31_RS14155 are separated by 274 nucleotides EX31_RS14155 and EX31_RS14160 overlap by 26 nucleotides EX31_RS14160 and EX31_RS14165 are separated by 212 nucleotides
EX31_RS14150: EX31_RS14150 - MFS transporter, at 5,662 to 7,248
_RS14150
EX31_RS14155: EX31_RS14155 - YijD family membrane protein, at 7,523 to 7,882
_RS14155
EX31_RS14160: EX31_RS14160 - HTH-type transcriptional repressor FabR, at 7,857 to 8,537
_RS14160
EX31_RS14165: EX31_RS14165 - Si-specific NAD(P)(+) transhydrogenase, at 8,750 to 10,150
_RS14165
Position (kb) 7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 6.645 kb on + strand, within EX31_RS14150 at 6.653 kb on + strand, within EX31_RS14150 at 6.653 kb on + strand, within EX31_RS14150 at 6.653 kb on + strand, within EX31_RS14150 at 6.653 kb on + strand, within EX31_RS14150 at 6.653 kb on + strand, within EX31_RS14150 at 6.653 kb on + strand, within EX31_RS14150 at 6.654 kb on - strand, within EX31_RS14150 at 6.654 kb on - strand, within EX31_RS14150 at 6.654 kb on - strand, within EX31_RS14150 at 6.704 kb on + strand, within EX31_RS14150 at 6.704 kb on + strand, within EX31_RS14150 at 6.705 kb on - strand, within EX31_RS14150 at 6.723 kb on + strand, within EX31_RS14150 at 6.723 kb on + strand, within EX31_RS14150 at 6.724 kb on - strand, within EX31_RS14150 at 6.724 kb on - strand, within EX31_RS14150 at 6.724 kb on - strand, within EX31_RS14150 at 6.724 kb on - strand, within EX31_RS14150 at 6.724 kb on - strand, within EX31_RS14150 at 6.864 kb on - strand, within EX31_RS14150 at 6.884 kb on + strand, within EX31_RS14150 at 6.884 kb on + strand, within EX31_RS14150 at 6.885 kb on - strand, within EX31_RS14150 at 6.885 kb on - strand, within EX31_RS14150 at 6.885 kb on - strand, within EX31_RS14150 at 6.905 kb on + strand, within EX31_RS14150 at 6.905 kb on + strand, within EX31_RS14150 at 6.905 kb on + strand, within EX31_RS14150 at 6.905 kb on + strand, within EX31_RS14150 at 6.906 kb on - strand, within EX31_RS14150 at 6.906 kb on - strand, within EX31_RS14150 at 6.906 kb on - strand, within EX31_RS14150 at 6.906 kb on - strand, within EX31_RS14150 at 6.917 kb on + strand, within EX31_RS14150 at 6.917 kb on + strand, within EX31_RS14150 at 6.917 kb on + strand, within EX31_RS14150 at 6.917 kb on + strand, within EX31_RS14150 at 6.917 kb on + strand, within EX31_RS14150 at 6.917 kb on + strand, within EX31_RS14150 at 6.918 kb on - strand, within EX31_RS14150 at 6.918 kb on - strand, within EX31_RS14150 at 6.918 kb on - strand, within EX31_RS14150 at 6.920 kb on + strand, within EX31_RS14150 at 6.920 kb on + strand, within EX31_RS14150 at 6.920 kb on + strand, within EX31_RS14150 at 6.921 kb on - strand, within EX31_RS14150 at 6.921 kb on - strand, within EX31_RS14150 at 6.921 kb on - strand, within EX31_RS14150 at 6.921 kb on - strand, within EX31_RS14150 at 6.926 kb on + strand, within EX31_RS14150 at 6.926 kb on + strand, within EX31_RS14150 at 6.926 kb on + strand, within EX31_RS14150 at 6.926 kb on + strand, within EX31_RS14150 at 6.927 kb on - strand, within EX31_RS14150 at 6.927 kb on - strand, within EX31_RS14150 at 6.927 kb on - strand, within EX31_RS14150 at 6.927 kb on - strand, within EX31_RS14150 at 6.927 kb on - strand, within EX31_RS14150 at 6.927 kb on - strand, within EX31_RS14150 at 7.038 kb on + strand, within EX31_RS14150 at 7.039 kb on - strand, within EX31_RS14150 at 7.049 kb on + strand, within EX31_RS14150 at 7.101 kb on + strand at 7.101 kb on + strand at 7.102 kb on - strand at 7.142 kb on + strand at 7.143 kb on - strand at 7.143 kb on - strand at 7.143 kb on - strand at 7.153 kb on + strand at 7.154 kb on - strand at 7.154 kb on - strand at 7.217 kb on + strand at 7.217 kb on + strand at 7.218 kb on - strand at 7.221 kb on + strand at 7.221 kb on + strand at 7.221 kb on + strand at 7.222 kb on - strand at 7.222 kb on - strand at 7.266 kb on + strand at 7.266 kb on + strand at 7.267 kb on - strand at 7.267 kb on - strand at 7.275 kb on + strand at 7.275 kb on + strand at 7.275 kb on + strand at 7.275 kb on + strand at 7.275 kb on + strand at 7.275 kb on + strand at 7.275 kb on + strand at 7.276 kb on - strand at 7.276 kb on - strand at 7.276 kb on - strand at 7.276 kb on - strand at 7.276 kb on - strand at 7.276 kb on - strand at 7.277 kb on + strand at 7.277 kb on + strand at 7.277 kb on + strand at 7.278 kb on - strand at 7.278 kb on - strand at 7.283 kb on + strand at 7.283 kb on + strand at 7.284 kb on - strand at 7.304 kb on + strand at 7.304 kb on + strand at 7.304 kb on + strand at 7.305 kb on - strand at 7.305 kb on - strand at 7.305 kb on - strand at 7.413 kb on + strand at 7.475 kb on - strand at 7.524 kb on + strand at 7.524 kb on + strand at 7.524 kb on + strand at 7.524 kb on + strand at 7.524 kb on + strand at 7.524 kb on + strand at 7.524 kb on + strand at 7.525 kb on - strand at 7.525 kb on - strand at 7.525 kb on - strand at 7.525 kb on - strand at 7.525 kb on - strand at 7.525 kb on - strand at 7.540 kb on + strand at 7.540 kb on + strand at 7.541 kb on - strand at 7.541 kb on - strand at 7.562 kb on + strand, within EX31_RS14155 at 7.562 kb on + strand, within EX31_RS14155 at 7.563 kb on - strand, within EX31_RS14155 at 7.647 kb on + strand, within EX31_RS14155 at 7.647 kb on + strand, within EX31_RS14155 at 7.648 kb on - strand, within EX31_RS14155 at 7.648 kb on - strand, within EX31_RS14155 at 7.720 kb on - strand, within EX31_RS14155 at 7.737 kb on + strand, within EX31_RS14155 at 7.738 kb on - strand, within EX31_RS14155 at 7.738 kb on - strand, within EX31_RS14155 at 7.738 kb on - strand, within EX31_RS14155 at 7.782 kb on - strand, within EX31_RS14155 at 7.817 kb on - strand, within EX31_RS14155 at 7.817 kb on - strand, within EX31_RS14155 at 7.817 kb on - strand, within EX31_RS14155 at 7.890 kb on - strand at 7.890 kb on - strand at 7.890 kb on - strand at 7.890 kb on - strand at 7.890 kb on - strand at 7.901 kb on + strand at 7.902 kb on - strand at 7.902 kb on - strand at 7.902 kb on - strand at 7.902 kb on - strand at 7.902 kb on - strand at 7.903 kb on - strand at 7.904 kb on + strand at 7.904 kb on + strand at 7.905 kb on - strand at 7.905 kb on - strand at 7.905 kb on - strand at 7.905 kb on - strand at 7.905 kb on - strand at 7.905 kb on - strand at 7.946 kb on - strand, within EX31_RS14160 at 7.952 kb on - strand, within EX31_RS14160 at 7.952 kb on - strand, within EX31_RS14160 at 7.954 kb on + strand, within EX31_RS14160 at 7.954 kb on + strand, within EX31_RS14160 at 7.955 kb on - strand, within EX31_RS14160 at 7.955 kb on - strand, within EX31_RS14160 at 7.955 kb on - strand, within EX31_RS14160 at 8.021 kb on + strand, within EX31_RS14160 at 8.090 kb on + strand, within EX31_RS14160 at 8.091 kb on - strand, within EX31_RS14160 at 8.091 kb on - strand, within EX31_RS14160 at 8.106 kb on - strand, within EX31_RS14160 at 8.125 kb on + strand, within EX31_RS14160 at 8.125 kb on + strand, within EX31_RS14160 at 8.125 kb on + strand, within EX31_RS14160 at 8.126 kb on - strand, within EX31_RS14160 at 8.145 kb on - strand, within EX31_RS14160 at 8.208 kb on + strand, within EX31_RS14160 at 8.208 kb on + strand, within EX31_RS14160 at 8.208 kb on + strand, within EX31_RS14160 at 8.209 kb on - strand, within EX31_RS14160 at 8.209 kb on - strand, within EX31_RS14160 at 8.392 kb on + strand, within EX31_RS14160 at 8.393 kb on - strand, within EX31_RS14160 at 8.457 kb on - strand, within EX31_RS14160 at 8.468 kb on + strand, within EX31_RS14160 at 8.468 kb on + strand, within EX31_RS14160 at 8.468 kb on + strand, within EX31_RS14160 at 8.468 kb on + strand, within EX31_RS14160 at 8.468 kb on + strand, within EX31_RS14160 at 8.469 kb on - strand, within EX31_RS14160 at 8.469 kb on - strand, within EX31_RS14160 at 8.469 kb on - strand, within EX31_RS14160 at 8.530 kb on - strand at 8.552 kb on + strand at 8.553 kb on - strand at 8.555 kb on + strand at 8.555 kb on + strand at 8.555 kb on + strand at 8.555 kb on + strand at 8.556 kb on - strand at 8.556 kb on - strand at 8.593 kb on + strand at 8.593 kb on + strand at 8.593 kb on + strand at 8.593 kb on + strand at 8.594 kb on - strand at 8.594 kb on - strand at 8.594 kb on - strand at 8.595 kb on + strand at 8.595 kb on + strand at 8.596 kb on - strand at 8.596 kb on - strand at 8.596 kb on - strand at 8.626 kb on + strand at 8.626 kb on + strand at 8.626 kb on + strand at 8.626 kb on + strand at 8.626 kb on + strand at 8.626 kb on + strand at 8.626 kb on + strand at 8.627 kb on - strand at 8.627 kb on - strand at 8.627 kb on - strand at 8.627 kb on - strand at 8.627 kb on - strand at 8.627 kb on - strand at 8.627 kb on - strand at 8.627 kb on - strand at 8.627 kb on - strand at 8.627 kb on - strand at 8.636 kb on + strand at 8.636 kb on + strand at 8.637 kb on - strand at 8.637 kb on - strand at 8.637 kb on - strand at 8.637 kb on - strand at 8.637 kb on - strand at 8.637 kb on - strand at 8.637 kb on - strand at 8.662 kb on + strand at 8.662 kb on + strand at 8.668 kb on + strand at 8.669 kb on - strand at 8.691 kb on - strand at 8.694 kb on + strand at 8.694 kb on + strand at 8.694 kb on + strand at 8.694 kb on + strand at 8.694 kb on + strand at 8.694 kb on + strand at 8.695 kb on - strand at 8.695 kb on - strand at 8.695 kb on - strand at 8.695 kb on - strand at 8.695 kb on - strand at 8.700 kb on + strand at 8.700 kb on + strand at 8.700 kb on + strand at 8.701 kb on - strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.737 kb on + strand at 8.861 kb on + strand at 8.861 kb on + strand at 8.862 kb on - strand at 8.862 kb on - strand at 8.862 kb on - strand at 8.863 kb on + strand at 8.863 kb on + strand at 8.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 6,645 + EX31_RS14150 0.62 -0.2 6,653 + EX31_RS14150 0.62 -0.3 6,653 + EX31_RS14150 0.62 -0.6 6,653 + EX31_RS14150 0.62 +0.5 6,653 + EX31_RS14150 0.62 +0.2 6,653 + EX31_RS14150 0.62 -0.2 6,653 + EX31_RS14150 0.62 +0.7 6,654 - EX31_RS14150 0.63 +0.2 6,654 - EX31_RS14150 0.63 +0.0 6,654 - EX31_RS14150 0.63 -0.2 6,704 + EX31_RS14150 0.66 -0.0 6,704 + EX31_RS14150 0.66 +0.9 6,705 - EX31_RS14150 0.66 -0.3 6,723 + EX31_RS14150 0.67 -1.0 6,723 + EX31_RS14150 0.67 -1.0 6,724 - EX31_RS14150 0.67 -1.5 6,724 - EX31_RS14150 0.67 -0.5 6,724 - EX31_RS14150 0.67 -0.1 6,724 - EX31_RS14150 0.67 -0.3 6,724 - EX31_RS14150 0.67 +0.8 6,864 - EX31_RS14150 0.76 -0.0 6,884 + EX31_RS14150 0.77 -0.2 6,884 + EX31_RS14150 0.77 +0.3 6,885 - EX31_RS14150 0.77 +0.5 6,885 - EX31_RS14150 0.77 +0.6 6,885 - EX31_RS14150 0.77 -0.0 6,905 + EX31_RS14150 0.78 -1.1 6,905 + EX31_RS14150 0.78 -0.9 6,905 + EX31_RS14150 0.78 -0.1 6,905 + EX31_RS14150 0.78 -0.1 6,906 - EX31_RS14150 0.78 +0.4 6,906 - EX31_RS14150 0.78 +0.5 6,906 - EX31_RS14150 0.78 -1.2 6,906 - EX31_RS14150 0.78 +0.2 6,917 + EX31_RS14150 0.79 -0.3 6,917 + EX31_RS14150 0.79 -0.7 6,917 + EX31_RS14150 0.79 -1.9 6,917 + EX31_RS14150 0.79 -0.4 6,917 + EX31_RS14150 0.79 +0.0 6,917 + EX31_RS14150 0.79 -0.3 6,918 - EX31_RS14150 0.79 +0.5 6,918 - EX31_RS14150 0.79 +0.1 6,918 - EX31_RS14150 0.79 +0.1 6,920 + EX31_RS14150 0.79 -0.6 6,920 + EX31_RS14150 0.79 -0.1 6,920 + EX31_RS14150 0.79 -0.9 6,921 - EX31_RS14150 0.79 +0.7 6,921 - EX31_RS14150 0.79 -0.2 6,921 - EX31_RS14150 0.79 +0.8 6,921 - EX31_RS14150 0.79 -0.1 6,926 + EX31_RS14150 0.80 +0.6 6,926 + EX31_RS14150 0.80 -0.3 6,926 + EX31_RS14150 0.80 -0.4 6,926 + EX31_RS14150 0.80 -0.2 6,927 - EX31_RS14150 0.80 -0.0 6,927 - EX31_RS14150 0.80 -0.1 6,927 - EX31_RS14150 0.80 +0.1 6,927 - EX31_RS14150 0.80 -0.9 6,927 - EX31_RS14150 0.80 -0.8 6,927 - EX31_RS14150 0.80 +0.6 7,038 + EX31_RS14150 0.87 -0.5 7,039 - EX31_RS14150 0.87 +0.2 7,049 + EX31_RS14150 0.87 +0.0 7,101 + +0.3 7,101 + +1.3 7,102 - -0.5 7,142 + -0.2 7,143 - +0.5 7,143 - -0.6 7,143 - -1.0 7,153 + -0.5 7,154 - -0.3 7,154 - -0.4 7,217 + -0.5 7,217 + -0.2 7,218 - -0.2 7,221 + -0.9 7,221 + -0.2 7,221 + -1.1 7,222 - -0.6 7,222 - -0.0 7,266 + -0.3 7,266 + -0.0 7,267 - -0.3 7,267 - +0.3 7,275 + -0.1 7,275 + +0.6 7,275 + +0.3 7,275 + +0.3 7,275 + -0.1 7,275 + -0.6 7,275 + +1.2 7,276 - +0.2 7,276 - -0.0 7,276 - +0.3 7,276 - +0.1 7,276 - +0.3 7,276 - +0.1 7,277 + +1.1 7,277 + +0.4 7,277 + +0.3 7,278 - +0.8 7,278 - -0.9 7,283 + +0.2 7,283 + +0.1 7,284 - -0.1 7,304 + -0.0 7,304 + +0.5 7,304 + +0.8 7,305 - -0.9 7,305 - +0.1 7,305 - -0.3 7,413 + -0.0 7,475 - +1.5 7,524 + -0.8 7,524 + -0.8 7,524 + +0.2 7,524 + +1.9 7,524 + +0.2 7,524 + -1.1 7,524 + +0.9 7,525 - -0.6 7,525 - -0.2 7,525 - -0.3 7,525 - +0.2 7,525 - -0.1 7,525 - -0.2 7,540 + +0.8 7,540 + -0.1 7,541 - +0.4 7,541 - +0.4 7,562 + EX31_RS14155 0.11 -0.5 7,562 + EX31_RS14155 0.11 -0.0 7,563 - EX31_RS14155 0.11 +0.3 7,647 + EX31_RS14155 0.34 +0.3 7,647 + EX31_RS14155 0.34 -0.5 7,648 - EX31_RS14155 0.35 -0.4 7,648 - EX31_RS14155 0.35 -0.3 7,720 - EX31_RS14155 0.55 +0.3 7,737 + EX31_RS14155 0.59 +0.2 7,738 - EX31_RS14155 0.60 +1.2 7,738 - EX31_RS14155 0.60 +0.1 7,738 - EX31_RS14155 0.60 +0.2 7,782 - EX31_RS14155 0.72 +0.5 7,817 - EX31_RS14155 0.82 -0.2 7,817 - EX31_RS14155 0.82 +0.7 7,817 - EX31_RS14155 0.82 -0.8 7,890 - +0.0 7,890 - +0.8 7,890 - +0.1 7,890 - +0.1 7,890 - +0.1 7,901 + +0.4 7,902 - -0.6 7,902 - -0.7 7,902 - -0.2 7,902 - +0.2 7,902 - +0.3 7,903 - +0.5 7,904 + +0.3 7,904 + +0.3 7,905 - +0.1 7,905 - -0.2 7,905 - -0.1 7,905 - +0.2 7,905 - +0.3 7,905 - -0.1 7,946 - EX31_RS14160 0.13 +0.3 7,952 - EX31_RS14160 0.14 +1.2 7,952 - EX31_RS14160 0.14 +0.5 7,954 + EX31_RS14160 0.14 -0.8 7,954 + EX31_RS14160 0.14 -0.0 7,955 - EX31_RS14160 0.14 -0.1 7,955 - EX31_RS14160 0.14 +0.3 7,955 - EX31_RS14160 0.14 +0.7 8,021 + EX31_RS14160 0.24 +0.7 8,090 + EX31_RS14160 0.34 +0.2 8,091 - EX31_RS14160 0.34 +1.3 8,091 - EX31_RS14160 0.34 -0.5 8,106 - EX31_RS14160 0.37 +1.8 8,125 + EX31_RS14160 0.39 -0.2 8,125 + EX31_RS14160 0.39 +2.3 8,125 + EX31_RS14160 0.39 -0.1 8,126 - EX31_RS14160 0.40 +0.8 8,145 - EX31_RS14160 0.42 +0.9 8,208 + EX31_RS14160 0.52 +0.6 8,208 + EX31_RS14160 0.52 +1.3 8,208 + EX31_RS14160 0.52 -0.1 8,209 - EX31_RS14160 0.52 +0.6 8,209 - EX31_RS14160 0.52 +0.4 8,392 + EX31_RS14160 0.79 +0.9 8,393 - EX31_RS14160 0.79 +0.5 8,457 - EX31_RS14160 0.88 +1.2 8,468 + EX31_RS14160 0.90 +1.7 8,468 + EX31_RS14160 0.90 +0.5 8,468 + EX31_RS14160 0.90 +0.5 8,468 + EX31_RS14160 0.90 +1.0 8,468 + EX31_RS14160 0.90 +0.7 8,469 - EX31_RS14160 0.90 +0.2 8,469 - EX31_RS14160 0.90 +0.4 8,469 - EX31_RS14160 0.90 +1.5 8,530 - +2.5 8,552 + -0.3 8,553 - +0.1 8,555 + +0.5 8,555 + +1.7 8,555 + -0.3 8,555 + +0.8 8,556 - +0.1 8,556 - +0.4 8,593 + +0.0 8,593 + +0.2 8,593 + +0.4 8,593 + +0.1 8,594 - -0.3 8,594 - -0.2 8,594 - +0.4 8,595 + +0.4 8,595 + +0.7 8,596 - +0.1 8,596 - +0.2 8,596 - +0.1 8,626 + -0.1 8,626 + -0.2 8,626 + +0.3 8,626 + +0.1 8,626 + +0.1 8,626 + -0.4 8,626 + +0.9 8,627 - -0.6 8,627 - +1.0 8,627 - -0.0 8,627 - -1.0 8,627 - -0.6 8,627 - -0.4 8,627 - -0.4 8,627 - +0.4 8,627 - -0.1 8,627 - -1.1 8,636 + -0.3 8,636 + +0.3 8,637 - +0.5 8,637 - +0.2 8,637 - +0.8 8,637 - +0.4 8,637 - +0.0 8,637 - +0.0 8,637 - +0.0 8,662 + -0.9 8,662 + +0.3 8,668 + +0.3 8,669 - +0.1 8,691 - -0.6 8,694 + +0.8 8,694 + +0.2 8,694 + +0.1 8,694 + +1.6 8,694 + +0.0 8,694 + -0.1 8,695 - +0.2 8,695 - -0.2 8,695 - +0.8 8,695 - -0.6 8,695 - -0.5 8,700 + +0.9 8,700 + -0.2 8,700 + -0.0 8,701 - -0.4 8,703 + -0.3 8,703 + +0.7 8,703 + -0.2 8,704 - +0.5 8,704 - +0.0 8,704 - +0.8 8,704 - +0.2 8,704 - +0.5 8,704 - -0.9 8,737 + -0.1 8,861 + -0.9 8,861 + -0.4 8,862 - -0.7 8,862 - +0.1 8,862 - -0.7 8,863 + -1.3 8,863 + -0.3 8,864 - +0.3
Or see this region's nucleotide sequence