Strain Fitness in Rahnella sp. WP5 around EX31_RS12615

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS12610 and EX31_RS12615 are separated by 598 nucleotidesEX31_RS12615 and EX31_RS12620 are separated by 110 nucleotides EX31_RS12610: EX31_RS12610 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 193,996 to 194,694 _RS12610 EX31_RS12615: EX31_RS12615 - pirin family protein, at 195,293 to 195,997 _RS12615 EX31_RS12620: EX31_RS12620 - LysR family transcriptional regulator, at 196,108 to 197,013 _RS12620 Position (kb) 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 194.295 kb on + strand, within EX31_RS12610at 194.296 kb on - strand, within EX31_RS12610at 194.326 kb on + strand, within EX31_RS12610at 194.326 kb on + strand, within EX31_RS12610at 194.327 kb on - strand, within EX31_RS12610at 194.327 kb on - strand, within EX31_RS12610at 194.327 kb on - strand, within EX31_RS12610at 194.327 kb on - strand, within EX31_RS12610at 194.328 kb on + strand, within EX31_RS12610at 194.329 kb on - strand, within EX31_RS12610at 194.329 kb on - strand, within EX31_RS12610at 194.329 kb on - strand, within EX31_RS12610at 194.397 kb on + strand, within EX31_RS12610at 194.397 kb on + strand, within EX31_RS12610at 194.398 kb on - strand, within EX31_RS12610at 194.410 kb on - strand, within EX31_RS12610at 194.425 kb on - strand, within EX31_RS12610at 194.425 kb on - strand, within EX31_RS12610at 194.457 kb on - strand, within EX31_RS12610at 194.473 kb on - strand, within EX31_RS12610at 194.474 kb on + strand, within EX31_RS12610at 194.474 kb on + strand, within EX31_RS12610at 194.475 kb on - strand, within EX31_RS12610at 194.475 kb on - strand, within EX31_RS12610at 194.475 kb on - strand, within EX31_RS12610at 194.475 kb on - strand, within EX31_RS12610at 194.506 kb on - strand, within EX31_RS12610at 194.508 kb on + strand, within EX31_RS12610at 194.509 kb on - strand, within EX31_RS12610at 194.509 kb on - strand, within EX31_RS12610at 194.509 kb on - strand, within EX31_RS12610at 194.509 kb on - strand, within EX31_RS12610at 194.566 kb on + strand, within EX31_RS12610at 194.566 kb on + strand, within EX31_RS12610at 194.566 kb on + strand, within EX31_RS12610at 194.567 kb on - strand, within EX31_RS12610at 194.618 kb on - strand, within EX31_RS12610at 194.999 kb on + strandat 194.999 kb on + strandat 195.001 kb on + strandat 195.001 kb on + strandat 195.002 kb on - strandat 195.003 kb on + strandat 195.003 kb on + strandat 195.003 kb on + strandat 195.004 kb on - strandat 195.004 kb on - strandat 195.004 kb on - strandat 195.183 kb on + strandat 195.215 kb on + strandat 195.215 kb on + strandat 195.311 kb on + strandat 195.311 kb on + strandat 195.311 kb on + strandat 195.312 kb on - strandat 195.312 kb on - strandat 195.315 kb on - strandat 195.332 kb on - strandat 195.390 kb on - strand, within EX31_RS12615at 195.390 kb on - strand, within EX31_RS12615at 195.399 kb on - strand, within EX31_RS12615at 195.454 kb on - strand, within EX31_RS12615at 195.696 kb on + strand, within EX31_RS12615at 195.697 kb on - strand, within EX31_RS12615at 195.719 kb on + strand, within EX31_RS12615at 195.722 kb on + strand, within EX31_RS12615at 195.722 kb on + strand, within EX31_RS12615at 195.722 kb on + strand, within EX31_RS12615at 195.723 kb on - strand, within EX31_RS12615at 195.723 kb on - strand, within EX31_RS12615at 195.723 kb on - strand, within EX31_RS12615at 195.726 kb on - strand, within EX31_RS12615at 195.775 kb on - strand, within EX31_RS12615at 195.797 kb on - strand, within EX31_RS12615at 195.800 kb on - strand, within EX31_RS12615at 195.822 kb on + strand, within EX31_RS12615at 195.823 kb on - strand, within EX31_RS12615at 195.888 kb on + strand, within EX31_RS12615at 195.888 kb on + strand, within EX31_RS12615at 195.888 kb on + strand, within EX31_RS12615at 195.889 kb on - strand, within EX31_RS12615at 195.912 kb on + strand, within EX31_RS12615at 195.913 kb on - strand, within EX31_RS12615at 195.913 kb on - strand, within EX31_RS12615at 195.931 kb on + strandat 195.931 kb on + strandat 195.932 kb on - strandat 195.932 kb on - strandat 195.932 kb on - strandat 195.932 kb on - strandat 195.932 kb on - strandat 195.932 kb on - strandat 195.933 kb on + strandat 195.934 kb on - strandat 195.992 kb on - strandat 195.992 kb on - strandat 196.027 kb on + strandat 196.027 kb on + strandat 196.027 kb on + strandat 196.027 kb on + strandat 196.027 kb on + strandat 196.028 kb on - strandat 196.028 kb on - strandat 196.028 kb on - strandat 196.028 kb on - strandat 196.028 kb on - strandat 196.028 kb on - strandat 196.029 kb on + strandat 196.029 kb on + strandat 196.029 kb on + strandat 196.029 kb on + strandat 196.030 kb on - strandat 196.030 kb on - strandat 196.030 kb on - strandat 196.030 kb on - strandat 196.030 kb on - strandat 196.037 kb on - strandat 196.037 kb on - strandat 196.067 kb on + strandat 196.079 kb on + strandat 196.225 kb on + strand, within EX31_RS12620at 196.225 kb on + strand, within EX31_RS12620at 196.225 kb on + strand, within EX31_RS12620at 196.226 kb on - strand, within EX31_RS12620at 196.226 kb on - strand, within EX31_RS12620at 196.265 kb on + strand, within EX31_RS12620at 196.265 kb on + strand, within EX31_RS12620at 196.265 kb on + strand, within EX31_RS12620at 196.266 kb on - strand, within EX31_RS12620at 196.317 kb on - strand, within EX31_RS12620at 196.334 kb on + strand, within EX31_RS12620at 196.334 kb on + strand, within EX31_RS12620at 196.334 kb on + strand, within EX31_RS12620at 196.353 kb on + strand, within EX31_RS12620at 196.354 kb on - strand, within EX31_RS12620at 196.354 kb on - strand, within EX31_RS12620at 196.549 kb on - strand, within EX31_RS12620at 196.549 kb on - strand, within EX31_RS12620at 196.609 kb on + strand, within EX31_RS12620at 196.609 kb on + strand, within EX31_RS12620at 196.609 kb on + strand, within EX31_RS12620at 196.609 kb on + strand, within EX31_RS12620at 196.609 kb on + strand, within EX31_RS12620at 196.609 kb on + strand, within EX31_RS12620at 196.609 kb on + strand, within EX31_RS12620at 196.610 kb on - strand, within EX31_RS12620at 196.611 kb on + strand, within EX31_RS12620at 196.611 kb on + strand, within EX31_RS12620at 196.611 kb on + strand, within EX31_RS12620at 196.611 kb on + strand, within EX31_RS12620at 196.612 kb on - strand, within EX31_RS12620at 196.625 kb on + strand, within EX31_RS12620at 196.625 kb on + strand, within EX31_RS12620at 196.625 kb on + strand, within EX31_RS12620at 196.625 kb on + strand, within EX31_RS12620at 196.625 kb on + strand, within EX31_RS12620at 196.625 kb on + strand, within EX31_RS12620at 196.625 kb on + strand, within EX31_RS12620at 196.625 kb on + strand, within EX31_RS12620at 196.625 kb on + strand, within EX31_RS12620at 196.626 kb on - strand, within EX31_RS12620at 196.626 kb on - strand, within EX31_RS12620at 196.626 kb on - strand, within EX31_RS12620at 196.626 kb on - strand, within EX31_RS12620at 196.626 kb on - strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.627 kb on + strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.628 kb on - strand, within EX31_RS12620at 196.697 kb on - strand, within EX31_RS12620at 196.761 kb on + strand, within EX31_RS12620at 196.785 kb on + strand, within EX31_RS12620at 196.786 kb on - strand, within EX31_RS12620at 196.803 kb on + strand, within EX31_RS12620at 196.803 kb on + strand, within EX31_RS12620at 196.804 kb on - strand, within EX31_RS12620at 196.823 kb on + strand, within EX31_RS12620at 196.823 kb on + strand, within EX31_RS12620at 196.824 kb on - strand, within EX31_RS12620at 196.900 kb on + strand, within EX31_RS12620at 196.900 kb on + strand, within EX31_RS12620at 196.900 kb on + strand, within EX31_RS12620at 196.900 kb on + strand, within EX31_RS12620at 196.902 kb on + strand, within EX31_RS12620at 196.920 kb on + strand, within EX31_RS12620at 196.920 kb on + strand, within EX31_RS12620at 196.921 kb on - strand, within EX31_RS12620at 196.921 kb on - strand, within EX31_RS12620at 196.921 kb on - strand, within EX31_RS12620at 196.923 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
194,295 + EX31_RS12610 0.43 +0.1
194,296 - EX31_RS12610 0.43 +0.2
194,326 + EX31_RS12610 0.47 +0.2
194,326 + EX31_RS12610 0.47 -0.2
194,327 - EX31_RS12610 0.47 -0.9
194,327 - EX31_RS12610 0.47 -0.3
194,327 - EX31_RS12610 0.47 +0.7
194,327 - EX31_RS12610 0.47 +0.0
194,328 + EX31_RS12610 0.47 -1.6
194,329 - EX31_RS12610 0.48 +0.0
194,329 - EX31_RS12610 0.48 +0.1
194,329 - EX31_RS12610 0.48 +0.2
194,397 + EX31_RS12610 0.57 -0.4
194,397 + EX31_RS12610 0.57 -0.4
194,398 - EX31_RS12610 0.58 +0.5
194,410 - EX31_RS12610 0.59 +1.1
194,425 - EX31_RS12610 0.61 -0.1
194,425 - EX31_RS12610 0.61 +0.1
194,457 - EX31_RS12610 0.66 -0.9
194,473 - EX31_RS12610 0.68 +0.1
194,474 + EX31_RS12610 0.68 -0.7
194,474 + EX31_RS12610 0.68 -1.8
194,475 - EX31_RS12610 0.69 -0.8
194,475 - EX31_RS12610 0.69 -0.1
194,475 - EX31_RS12610 0.69 -1.1
194,475 - EX31_RS12610 0.69 -2.0
194,506 - EX31_RS12610 0.73 +0.5
194,508 + EX31_RS12610 0.73 -0.9
194,509 - EX31_RS12610 0.73 +0.6
194,509 - EX31_RS12610 0.73 -0.5
194,509 - EX31_RS12610 0.73 -1.9
194,509 - EX31_RS12610 0.73 +0.4
194,566 + EX31_RS12610 0.82 +0.5
194,566 + EX31_RS12610 0.82 -0.1
194,566 + EX31_RS12610 0.82 +0.6
194,567 - EX31_RS12610 0.82 -1.0
194,618 - EX31_RS12610 0.89 -0.6
194,999 + +0.4
194,999 + +0.8
195,001 + +0.1
195,001 + -0.5
195,002 - -0.2
195,003 + -1.5
195,003 + +0.7
195,003 + +0.6
195,004 - -0.9
195,004 - +0.3
195,004 - -1.0
195,183 + -0.3
195,215 + +0.0
195,215 + +0.2
195,311 + +0.2
195,311 + +0.3
195,311 + +0.2
195,312 - -0.2
195,312 - +0.3
195,315 - +0.4
195,332 - -0.0
195,390 - EX31_RS12615 0.14 -0.7
195,390 - EX31_RS12615 0.14 +0.5
195,399 - EX31_RS12615 0.15 -0.2
195,454 - EX31_RS12615 0.23 -1.3
195,696 + EX31_RS12615 0.57 -1.1
195,697 - EX31_RS12615 0.57 +0.3
195,719 + EX31_RS12615 0.60 +0.7
195,722 + EX31_RS12615 0.61 +0.3
195,722 + EX31_RS12615 0.61 +0.5
195,722 + EX31_RS12615 0.61 +0.4
195,723 - EX31_RS12615 0.61 +0.3
195,723 - EX31_RS12615 0.61 -0.0
195,723 - EX31_RS12615 0.61 -0.6
195,726 - EX31_RS12615 0.61 +0.3
195,775 - EX31_RS12615 0.68 +0.4
195,797 - EX31_RS12615 0.71 +0.7
195,800 - EX31_RS12615 0.72 +0.2
195,822 + EX31_RS12615 0.75 +2.0
195,823 - EX31_RS12615 0.75 +0.0
195,888 + EX31_RS12615 0.84 -0.5
195,888 + EX31_RS12615 0.84 -0.8
195,888 + EX31_RS12615 0.84 -0.8
195,889 - EX31_RS12615 0.85 -0.5
195,912 + EX31_RS12615 0.88 -0.3
195,913 - EX31_RS12615 0.88 -0.1
195,913 - EX31_RS12615 0.88 -0.4
195,931 + +0.0
195,931 + +0.4
195,932 - +0.6
195,932 - +0.1
195,932 - +1.2
195,932 - -0.1
195,932 - -0.1
195,932 - -0.5
195,933 + -1.2
195,934 - +0.5
195,992 - +1.4
195,992 - -0.4
196,027 + +0.4
196,027 + -1.0
196,027 + -0.0
196,027 + -0.8
196,027 + -0.2
196,028 - -1.0
196,028 - +0.1
196,028 - +0.5
196,028 - +1.1
196,028 - +0.5
196,028 - -0.0
196,029 + -0.2
196,029 + -0.4
196,029 + -0.5
196,029 + -0.4
196,030 - -0.2
196,030 - -0.7
196,030 - -0.5
196,030 - -0.4
196,030 - -2.0
196,037 - +0.2
196,037 - -0.1
196,067 + +0.1
196,079 + +0.5
196,225 + EX31_RS12620 0.13 +0.4
196,225 + EX31_RS12620 0.13 +0.4
196,225 + EX31_RS12620 0.13 +0.3
196,226 - EX31_RS12620 0.13 -0.6
196,226 - EX31_RS12620 0.13 -2.5
196,265 + EX31_RS12620 0.17 +0.4
196,265 + EX31_RS12620 0.17 +0.4
196,265 + EX31_RS12620 0.17 -0.4
196,266 - EX31_RS12620 0.17 -1.4
196,317 - EX31_RS12620 0.23 -0.3
196,334 + EX31_RS12620 0.25 +0.4
196,334 + EX31_RS12620 0.25 +0.3
196,334 + EX31_RS12620 0.25 +0.5
196,353 + EX31_RS12620 0.27 -0.4
196,354 - EX31_RS12620 0.27 -0.4
196,354 - EX31_RS12620 0.27 -0.4
196,549 - EX31_RS12620 0.49 -0.0
196,549 - EX31_RS12620 0.49 -0.9
196,609 + EX31_RS12620 0.55 +0.8
196,609 + EX31_RS12620 0.55 -0.5
196,609 + EX31_RS12620 0.55 +0.0
196,609 + EX31_RS12620 0.55 -0.6
196,609 + EX31_RS12620 0.55 +0.1
196,609 + EX31_RS12620 0.55 +0.9
196,609 + EX31_RS12620 0.55 +0.6
196,610 - EX31_RS12620 0.55 -0.6
196,611 + EX31_RS12620 0.56 +0.4
196,611 + EX31_RS12620 0.56 +0.2
196,611 + EX31_RS12620 0.56 -0.3
196,611 + EX31_RS12620 0.56 -0.2
196,612 - EX31_RS12620 0.56 -1.5
196,625 + EX31_RS12620 0.57 -1.2
196,625 + EX31_RS12620 0.57 -0.9
196,625 + EX31_RS12620 0.57 +0.8
196,625 + EX31_RS12620 0.57 -1.3
196,625 + EX31_RS12620 0.57 +0.6
196,625 + EX31_RS12620 0.57 +0.2
196,625 + EX31_RS12620 0.57 -0.0
196,625 + EX31_RS12620 0.57 +0.5
196,625 + EX31_RS12620 0.57 +0.6
196,626 - EX31_RS12620 0.57 -0.3
196,626 - EX31_RS12620 0.57 -0.9
196,626 - EX31_RS12620 0.57 -0.7
196,626 - EX31_RS12620 0.57 -0.7
196,626 - EX31_RS12620 0.57 -1.1
196,627 + EX31_RS12620 0.57 +0.2
196,627 + EX31_RS12620 0.57 -0.5
196,627 + EX31_RS12620 0.57 +0.9
196,627 + EX31_RS12620 0.57 +0.2
196,627 + EX31_RS12620 0.57 +0.7
196,627 + EX31_RS12620 0.57 +0.8
196,627 + EX31_RS12620 0.57 +0.1
196,627 + EX31_RS12620 0.57 -1.0
196,627 + EX31_RS12620 0.57 -0.0
196,627 + EX31_RS12620 0.57 +1.2
196,627 + EX31_RS12620 0.57 +1.2
196,627 + EX31_RS12620 0.57 +1.1
196,627 + EX31_RS12620 0.57 +0.1
196,627 + EX31_RS12620 0.57 -0.1
196,627 + EX31_RS12620 0.57 +0.6
196,627 + EX31_RS12620 0.57 -0.1
196,627 + EX31_RS12620 0.57 -0.7
196,627 + EX31_RS12620 0.57 +0.5
196,627 + EX31_RS12620 0.57 +0.0
196,627 + EX31_RS12620 0.57 +0.2
196,627 + EX31_RS12620 0.57 -0.3
196,627 + EX31_RS12620 0.57 -0.5
196,627 + EX31_RS12620 0.57 +0.1
196,627 + EX31_RS12620 0.57 +0.3
196,627 + EX31_RS12620 0.57 +0.8
196,627 + EX31_RS12620 0.57 -0.1
196,627 + EX31_RS12620 0.57 +0.4
196,628 - EX31_RS12620 0.57 +0.8
196,628 - EX31_RS12620 0.57 -0.4
196,628 - EX31_RS12620 0.57 +0.7
196,628 - EX31_RS12620 0.57 -1.0
196,628 - EX31_RS12620 0.57 +0.2
196,628 - EX31_RS12620 0.57 -0.5
196,628 - EX31_RS12620 0.57 -0.2
196,628 - EX31_RS12620 0.57 -0.1
196,628 - EX31_RS12620 0.57 -0.2
196,628 - EX31_RS12620 0.57 -0.5
196,628 - EX31_RS12620 0.57 -0.3
196,628 - EX31_RS12620 0.57 +0.4
196,628 - EX31_RS12620 0.57 -0.5
196,628 - EX31_RS12620 0.57 +0.3
196,628 - EX31_RS12620 0.57 -0.1
196,628 - EX31_RS12620 0.57 -0.8
196,628 - EX31_RS12620 0.57 -0.1
196,628 - EX31_RS12620 0.57 -1.6
196,628 - EX31_RS12620 0.57 -0.4
196,628 - EX31_RS12620 0.57 -0.8
196,628 - EX31_RS12620 0.57 -0.1
196,628 - EX31_RS12620 0.57 -1.7
196,697 - EX31_RS12620 0.65 -0.8
196,761 + EX31_RS12620 0.72 -0.1
196,785 + EX31_RS12620 0.75 -0.1
196,786 - EX31_RS12620 0.75 -0.8
196,803 + EX31_RS12620 0.77 +0.8
196,803 + EX31_RS12620 0.77 +0.4
196,804 - EX31_RS12620 0.77 +0.2
196,823 + EX31_RS12620 0.79 -0.2
196,823 + EX31_RS12620 0.79 -0.1
196,824 - EX31_RS12620 0.79 -0.6
196,900 + EX31_RS12620 0.87 +2.0
196,900 + EX31_RS12620 0.87 -0.0
196,900 + EX31_RS12620 0.87 +0.3
196,900 + EX31_RS12620 0.87 +0.4
196,902 + EX31_RS12620 0.88 -0.6
196,920 + EX31_RS12620 0.90 -0.7
196,920 + EX31_RS12620 0.90 +0.4
196,921 - EX31_RS12620 0.90 +0.5
196,921 - EX31_RS12620 0.90 -1.1
196,921 - EX31_RS12620 0.90 -0.9
196,923 + -0.5

Or see this region's nucleotide sequence