Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12020 and EX31_RS12025 are separated by 125 nucleotides EX31_RS12025 and EX31_RS12030 are separated by 37 nucleotides EX31_RS12030 and EX31_RS12035 are separated by 54 nucleotides
EX31_RS12020: EX31_RS12020 - FAD-dependent urate hydroxylase HpxO, at 69,146 to 70,303
_RS12020
EX31_RS12025: EX31_RS12025 - hypothetical protein, at 70,429 to 72,015
_RS12025
EX31_RS12030: EX31_RS12030 - hypothetical protein, at 72,053 to 72,538
_RS12030
EX31_RS12035: EX31_RS12035 - LysR family transcriptional regulator, at 72,593 to 73,495
_RS12035
Position (kb) 70
71
72
73 Strain fitness (log2 ratio) -2
-1
0
1 at 69.441 kb on - strand, within EX31_RS12020 at 69.441 kb on - strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.486 kb on - strand, within EX31_RS12020 at 69.486 kb on - strand, within EX31_RS12020 at 69.671 kb on + strand, within EX31_RS12020 at 69.676 kb on + strand, within EX31_RS12020 at 69.677 kb on - strand, within EX31_RS12020 at 69.791 kb on + strand, within EX31_RS12020 at 69.792 kb on - strand, within EX31_RS12020 at 69.841 kb on + strand, within EX31_RS12020 at 69.841 kb on + strand, within EX31_RS12020 at 69.842 kb on - strand, within EX31_RS12020 at 69.842 kb on - strand, within EX31_RS12020 at 69.866 kb on + strand, within EX31_RS12020 at 69.866 kb on + strand, within EX31_RS12020 at 69.867 kb on - strand, within EX31_RS12020 at 69.867 kb on - strand, within EX31_RS12020 at 69.867 kb on - strand, within EX31_RS12020 at 69.961 kb on + strand, within EX31_RS12020 at 69.961 kb on + strand, within EX31_RS12020 at 69.961 kb on + strand, within EX31_RS12020 at 69.962 kb on - strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.076 kb on - strand, within EX31_RS12020 at 70.076 kb on - strand, within EX31_RS12020 at 70.076 kb on - strand, within EX31_RS12020 at 70.076 kb on - strand, within EX31_RS12020 at 70.095 kb on + strand, within EX31_RS12020 at 70.095 kb on + strand, within EX31_RS12020 at 70.095 kb on + strand, within EX31_RS12020 at 70.096 kb on - strand, within EX31_RS12020 at 70.096 kb on - strand, within EX31_RS12020 at 70.121 kb on + strand, within EX31_RS12020 at 70.139 kb on + strand, within EX31_RS12020 at 70.140 kb on - strand, within EX31_RS12020 at 70.224 kb on - strand at 70.224 kb on - strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.330 kb on - strand at 70.330 kb on - strand at 70.333 kb on + strand at 70.333 kb on + strand at 70.334 kb on - strand at 70.334 kb on - strand at 70.334 kb on - strand at 70.366 kb on + strand at 70.367 kb on - strand at 70.367 kb on - strand at 70.386 kb on + strand at 70.386 kb on + strand at 70.387 kb on - strand at 70.387 kb on - strand at 70.437 kb on + strand at 70.437 kb on + strand at 70.438 kb on - strand at 70.438 kb on - strand at 70.438 kb on - strand at 70.452 kb on + strand at 70.453 kb on - strand at 70.453 kb on - strand at 70.453 kb on - strand at 70.453 kb on - strand at 70.453 kb on - strand at 70.477 kb on - strand at 70.589 kb on - strand, within EX31_RS12025 at 70.692 kb on + strand, within EX31_RS12025 at 70.693 kb on - strand, within EX31_RS12025 at 70.744 kb on + strand, within EX31_RS12025 at 70.825 kb on - strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.884 kb on + strand, within EX31_RS12025 at 71.062 kb on - strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.112 kb on + strand, within EX31_RS12025 at 71.257 kb on + strand, within EX31_RS12025 at 71.257 kb on + strand, within EX31_RS12025 at 71.258 kb on - strand, within EX31_RS12025 at 71.292 kb on + strand, within EX31_RS12025 at 71.292 kb on + strand, within EX31_RS12025 at 71.292 kb on + strand, within EX31_RS12025 at 71.293 kb on - strand, within EX31_RS12025 at 71.334 kb on + strand, within EX31_RS12025 at 71.353 kb on + strand, within EX31_RS12025 at 71.353 kb on + strand, within EX31_RS12025 at 71.353 kb on + strand, within EX31_RS12025 at 71.354 kb on - strand, within EX31_RS12025 at 71.354 kb on - strand, within EX31_RS12025 at 71.374 kb on + strand, within EX31_RS12025 at 71.374 kb on + strand, within EX31_RS12025 at 71.374 kb on + strand, within EX31_RS12025 at 71.375 kb on - strand, within EX31_RS12025 at 71.375 kb on - strand, within EX31_RS12025 at 71.377 kb on - strand, within EX31_RS12025 at 71.377 kb on - strand, within EX31_RS12025 at 71.517 kb on + strand, within EX31_RS12025 at 71.517 kb on + strand, within EX31_RS12025 at 71.517 kb on + strand, within EX31_RS12025 at 71.517 kb on + strand, within EX31_RS12025 at 71.518 kb on - strand, within EX31_RS12025 at 71.518 kb on - strand, within EX31_RS12025 at 71.527 kb on + strand, within EX31_RS12025 at 71.528 kb on - strand, within EX31_RS12025 at 71.528 kb on - strand, within EX31_RS12025 at 71.617 kb on + strand, within EX31_RS12025 at 71.618 kb on - strand, within EX31_RS12025 at 71.689 kb on + strand, within EX31_RS12025 at 71.731 kb on + strand, within EX31_RS12025 at 71.790 kb on + strand, within EX31_RS12025 at 71.790 kb on + strand, within EX31_RS12025 at 71.790 kb on + strand, within EX31_RS12025 at 71.790 kb on + strand, within EX31_RS12025 at 71.791 kb on - strand, within EX31_RS12025 at 71.791 kb on - strand, within EX31_RS12025 at 71.800 kb on + strand, within EX31_RS12025 at 71.800 kb on + strand, within EX31_RS12025 at 71.800 kb on + strand, within EX31_RS12025 at 71.801 kb on - strand, within EX31_RS12025 at 71.801 kb on - strand, within EX31_RS12025 at 71.801 kb on - strand, within EX31_RS12025 at 71.895 kb on + strand at 71.924 kb on - strand at 71.963 kb on + strand at 71.963 kb on + strand at 71.963 kb on + strand at 71.964 kb on - strand at 71.964 kb on - strand at 71.964 kb on - strand at 71.964 kb on - strand at 72.008 kb on + strand at 72.009 kb on - strand at 72.013 kb on + strand at 72.013 kb on + strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.017 kb on + strand at 72.017 kb on + strand at 72.017 kb on + strand at 72.017 kb on + strand at 72.018 kb on - strand at 72.047 kb on + strand at 72.054 kb on + strand at 72.054 kb on + strand at 72.054 kb on + strand at 72.054 kb on + strand at 72.054 kb on + strand at 72.054 kb on + strand at 72.055 kb on - strand at 72.055 kb on - strand at 72.055 kb on - strand at 72.055 kb on - strand at 72.055 kb on - strand at 72.055 kb on - strand at 72.109 kb on + strand, within EX31_RS12030 at 72.161 kb on - strand, within EX31_RS12030 at 72.313 kb on + strand, within EX31_RS12030 at 72.461 kb on - strand, within EX31_RS12030 at 72.479 kb on - strand, within EX31_RS12030 at 72.487 kb on + strand, within EX31_RS12030 at 72.521 kb on + strand at 72.521 kb on + strand at 72.521 kb on + strand at 72.521 kb on + strand at 72.522 kb on - strand at 72.522 kb on - strand at 72.522 kb on - strand at 72.522 kb on - strand at 72.522 kb on - strand at 72.522 kb on - strand at 72.522 kb on - strand at 72.556 kb on - strand at 72.556 kb on - strand at 72.592 kb on - strand at 72.643 kb on + strand at 72.676 kb on + strand at 72.788 kb on - strand, within EX31_RS12035 at 72.990 kb on + strand, within EX31_RS12035 at 72.991 kb on - strand, within EX31_RS12035 at 72.991 kb on - strand, within EX31_RS12035 at 72.991 kb on - strand, within EX31_RS12035
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 69,441 - EX31_RS12020 0.25 +0.1 69,441 - EX31_RS12020 0.25 -0.3 69,485 + EX31_RS12020 0.29 -0.2 69,485 + EX31_RS12020 0.29 -0.1 69,485 + EX31_RS12020 0.29 -0.7 69,485 + EX31_RS12020 0.29 +0.4 69,486 - EX31_RS12020 0.29 +0.5 69,486 - EX31_RS12020 0.29 +0.3 69,671 + EX31_RS12020 0.45 -1.5 69,676 + EX31_RS12020 0.46 +0.2 69,677 - EX31_RS12020 0.46 -0.4 69,791 + EX31_RS12020 0.56 +0.1 69,792 - EX31_RS12020 0.56 -0.1 69,841 + EX31_RS12020 0.60 -0.5 69,841 + EX31_RS12020 0.60 +0.2 69,842 - EX31_RS12020 0.60 +0.4 69,842 - EX31_RS12020 0.60 +0.1 69,866 + EX31_RS12020 0.62 +0.4 69,866 + EX31_RS12020 0.62 +0.5 69,867 - EX31_RS12020 0.62 -0.3 69,867 - EX31_RS12020 0.62 -0.7 69,867 - EX31_RS12020 0.62 +0.8 69,961 + EX31_RS12020 0.70 +0.9 69,961 + EX31_RS12020 0.70 +0.1 69,961 + EX31_RS12020 0.70 +0.8 69,962 - EX31_RS12020 0.70 +0.4 70,075 + EX31_RS12020 0.80 -0.2 70,075 + EX31_RS12020 0.80 +0.4 70,075 + EX31_RS12020 0.80 -0.2 70,075 + EX31_RS12020 0.80 +0.7 70,075 + EX31_RS12020 0.80 +0.0 70,076 - EX31_RS12020 0.80 +0.2 70,076 - EX31_RS12020 0.80 -0.0 70,076 - EX31_RS12020 0.80 -1.4 70,076 - EX31_RS12020 0.80 +0.7 70,095 + EX31_RS12020 0.82 -0.3 70,095 + EX31_RS12020 0.82 -0.0 70,095 + EX31_RS12020 0.82 +0.5 70,096 - EX31_RS12020 0.82 +0.6 70,096 - EX31_RS12020 0.82 +0.5 70,121 + EX31_RS12020 0.84 -0.0 70,139 + EX31_RS12020 0.86 +1.5 70,140 - EX31_RS12020 0.86 -0.5 70,224 - +0.0 70,224 - -0.9 70,329 + +0.7 70,329 + -0.7 70,329 + -1.2 70,329 + -0.1 70,329 + +0.3 70,329 + -0.0 70,329 + -0.8 70,329 + +0.9 70,329 + +0.3 70,330 - -0.8 70,330 - -0.4 70,333 + -0.6 70,333 + -0.3 70,334 - +0.3 70,334 - +0.7 70,334 - +0.1 70,366 + -0.2 70,367 - -0.3 70,367 - -0.8 70,386 + +0.2 70,386 + +0.9 70,387 - -1.0 70,387 - -0.7 70,437 + -0.1 70,437 + +0.5 70,438 - +0.2 70,438 - -0.4 70,438 - -1.5 70,452 + -0.1 70,453 - -0.4 70,453 - +0.1 70,453 - +0.5 70,453 - -0.7 70,453 - -0.5 70,477 - -0.1 70,589 - EX31_RS12025 0.10 -0.6 70,692 + EX31_RS12025 0.17 -0.0 70,693 - EX31_RS12025 0.17 -0.5 70,744 + EX31_RS12025 0.20 -0.1 70,825 - EX31_RS12025 0.25 -0.3 70,857 + EX31_RS12025 0.27 +0.3 70,857 + EX31_RS12025 0.27 +0.7 70,857 + EX31_RS12025 0.27 -0.2 70,857 + EX31_RS12025 0.27 +0.5 70,857 + EX31_RS12025 0.27 -1.1 70,857 + EX31_RS12025 0.27 -0.3 70,857 + EX31_RS12025 0.27 -0.0 70,884 + EX31_RS12025 0.29 -0.0 71,062 - EX31_RS12025 0.40 +0.5 71,087 + EX31_RS12025 0.41 -1.3 71,087 + EX31_RS12025 0.41 +1.0 71,087 + EX31_RS12025 0.41 -0.0 71,087 + EX31_RS12025 0.41 -0.1 71,087 + EX31_RS12025 0.41 -0.1 71,087 + EX31_RS12025 0.41 +0.1 71,087 + EX31_RS12025 0.41 +0.7 71,087 + EX31_RS12025 0.41 -0.8 71,087 + EX31_RS12025 0.41 -0.4 71,087 + EX31_RS12025 0.41 -0.5 71,087 + EX31_RS12025 0.41 -1.0 71,087 + EX31_RS12025 0.41 -0.2 71,087 + EX31_RS12025 0.41 -1.3 71,087 + EX31_RS12025 0.41 +1.2 71,087 + EX31_RS12025 0.41 -0.0 71,087 + EX31_RS12025 0.41 -0.5 71,087 + EX31_RS12025 0.41 +0.2 71,087 + EX31_RS12025 0.41 -1.3 71,087 + EX31_RS12025 0.41 +0.4 71,087 + EX31_RS12025 0.41 -0.0 71,087 + EX31_RS12025 0.41 -0.6 71,087 + EX31_RS12025 0.41 -0.1 71,088 - EX31_RS12025 0.42 -0.4 71,088 - EX31_RS12025 0.42 -0.3 71,088 - EX31_RS12025 0.42 -0.2 71,088 - EX31_RS12025 0.42 +0.8 71,088 - EX31_RS12025 0.42 +0.3 71,088 - EX31_RS12025 0.42 -0.2 71,088 - EX31_RS12025 0.42 +0.5 71,088 - EX31_RS12025 0.42 -0.7 71,088 - EX31_RS12025 0.42 -0.3 71,088 - EX31_RS12025 0.42 +0.4 71,088 - EX31_RS12025 0.42 -0.4 71,112 + EX31_RS12025 0.43 -0.6 71,257 + EX31_RS12025 0.52 -0.6 71,257 + EX31_RS12025 0.52 +0.5 71,258 - EX31_RS12025 0.52 -0.5 71,292 + EX31_RS12025 0.54 -0.3 71,292 + EX31_RS12025 0.54 +1.2 71,292 + EX31_RS12025 0.54 +0.2 71,293 - EX31_RS12025 0.54 -0.1 71,334 + EX31_RS12025 0.57 -0.2 71,353 + EX31_RS12025 0.58 -0.5 71,353 + EX31_RS12025 0.58 -0.5 71,353 + EX31_RS12025 0.58 +0.7 71,354 - EX31_RS12025 0.58 -0.8 71,354 - EX31_RS12025 0.58 -1.3 71,374 + EX31_RS12025 0.60 -0.1 71,374 + EX31_RS12025 0.60 -0.0 71,374 + EX31_RS12025 0.60 +0.3 71,375 - EX31_RS12025 0.60 -0.1 71,375 - EX31_RS12025 0.60 -0.7 71,377 - EX31_RS12025 0.60 -0.3 71,377 - EX31_RS12025 0.60 -0.0 71,517 + EX31_RS12025 0.69 -1.6 71,517 + EX31_RS12025 0.69 +0.3 71,517 + EX31_RS12025 0.69 -0.2 71,517 + EX31_RS12025 0.69 -0.2 71,518 - EX31_RS12025 0.69 +0.5 71,518 - EX31_RS12025 0.69 +0.0 71,527 + EX31_RS12025 0.69 -0.3 71,528 - EX31_RS12025 0.69 +0.4 71,528 - EX31_RS12025 0.69 +0.1 71,617 + EX31_RS12025 0.75 +0.6 71,618 - EX31_RS12025 0.75 -0.0 71,689 + EX31_RS12025 0.79 +0.0 71,731 + EX31_RS12025 0.82 -0.8 71,790 + EX31_RS12025 0.86 -0.1 71,790 + EX31_RS12025 0.86 -1.3 71,790 + EX31_RS12025 0.86 +0.6 71,790 + EX31_RS12025 0.86 +0.5 71,791 - EX31_RS12025 0.86 -0.5 71,791 - EX31_RS12025 0.86 -1.3 71,800 + EX31_RS12025 0.86 +0.3 71,800 + EX31_RS12025 0.86 +0.6 71,800 + EX31_RS12025 0.86 -1.1 71,801 - EX31_RS12025 0.86 -0.1 71,801 - EX31_RS12025 0.86 -0.2 71,801 - EX31_RS12025 0.86 -0.4 71,895 + -0.0 71,924 - +0.4 71,963 + -1.2 71,963 + +0.8 71,963 + +1.2 71,964 - -0.7 71,964 - +0.7 71,964 - +0.2 71,964 - -0.0 72,008 + +0.5 72,009 - -0.6 72,013 + -0.6 72,013 + +1.0 72,014 - -1.1 72,014 - +0.8 72,014 - -1.3 72,014 - -0.5 72,014 - +0.4 72,014 - +0.1 72,014 - -0.1 72,014 - -0.3 72,014 - +0.0 72,014 - +0.2 72,017 + -0.5 72,017 + +0.1 72,017 + +0.3 72,017 + +0.1 72,018 - -0.6 72,047 + -1.0 72,054 + +0.4 72,054 + +0.2 72,054 + -0.3 72,054 + +0.1 72,054 + -0.2 72,054 + -1.0 72,055 - -0.2 72,055 - +0.2 72,055 - +0.2 72,055 - +0.5 72,055 - -0.1 72,055 - +0.4 72,109 + EX31_RS12030 0.12 -0.9 72,161 - EX31_RS12030 0.22 +0.3 72,313 + EX31_RS12030 0.53 -0.5 72,461 - EX31_RS12030 0.84 -0.7 72,479 - EX31_RS12030 0.88 +0.0 72,487 + EX31_RS12030 0.89 -1.0 72,521 + +0.5 72,521 + -2.0 72,521 + -1.3 72,521 + -0.6 72,522 - -0.6 72,522 - +0.6 72,522 - -0.2 72,522 - -0.7 72,522 - +0.2 72,522 - -1.3 72,522 - +0.9 72,556 - +0.1 72,556 - +0.2 72,592 - +0.1 72,643 + +0.1 72,676 + -0.4 72,788 - EX31_RS12035 0.22 +0.8 72,990 + EX31_RS12035 0.44 -0.6 72,991 - EX31_RS12035 0.44 +0.1 72,991 - EX31_RS12035 0.44 +0.2 72,991 - EX31_RS12035 0.44 +0.3
Or see this region's nucleotide sequence