Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06010 and EX31_RS06015 are separated by 75 nucleotides EX31_RS06015 and EX31_RS06020 are separated by 323 nucleotides
EX31_RS06010: EX31_RS06010 - LysR family transcriptional regulator, at 362,162 to 363,049
_RS06010
EX31_RS06015: EX31_RS06015 - methyl-accepting chemotaxis protein, at 363,125 to 365,020
_RS06015
EX31_RS06020: EX31_RS06020 - hypothetical protein, at 365,344 to 366,069
_RS06020
Position (kb) 363
364
365
366 Strain fitness (log2 ratio) -2
-1
0
1
2 at 362.127 kb on + strand at 362.127 kb on + strand at 362.127 kb on + strand at 362.158 kb on + strand at 362.158 kb on + strand at 362.158 kb on + strand at 362.159 kb on - strand at 362.159 kb on - strand at 362.167 kb on + strand at 362.200 kb on - strand at 362.357 kb on + strand, within EX31_RS06010 at 362.358 kb on - strand, within EX31_RS06010 at 362.501 kb on + strand, within EX31_RS06010 at 362.501 kb on + strand, within EX31_RS06010 at 362.523 kb on + strand, within EX31_RS06010 at 362.524 kb on - strand, within EX31_RS06010 at 362.524 kb on - strand, within EX31_RS06010 at 362.539 kb on - strand, within EX31_RS06010 at 362.642 kb on + strand, within EX31_RS06010 at 362.672 kb on + strand, within EX31_RS06010 at 362.673 kb on - strand, within EX31_RS06010 at 362.676 kb on + strand, within EX31_RS06010 at 362.677 kb on - strand, within EX31_RS06010 at 362.677 kb on - strand, within EX31_RS06010 at 362.677 kb on - strand, within EX31_RS06010 at 362.677 kb on - strand, within EX31_RS06010 at 362.737 kb on + strand, within EX31_RS06010 at 362.738 kb on - strand, within EX31_RS06010 at 362.816 kb on + strand, within EX31_RS06010 at 362.816 kb on + strand, within EX31_RS06010 at 362.817 kb on - strand, within EX31_RS06010 at 362.817 kb on - strand, within EX31_RS06010 at 362.817 kb on - strand, within EX31_RS06010 at 362.817 kb on - strand, within EX31_RS06010 at 362.817 kb on - strand, within EX31_RS06010 at 362.944 kb on + strand, within EX31_RS06010 at 362.975 kb on + strand at 363.019 kb on + strand at 363.019 kb on + strand at 363.020 kb on - strand at 363.045 kb on - strand at 363.045 kb on - strand at 363.055 kb on - strand at 363.133 kb on + strand at 363.133 kb on + strand at 363.133 kb on + strand at 363.133 kb on + strand at 363.133 kb on + strand at 363.134 kb on - strand at 363.143 kb on + strand at 363.143 kb on + strand at 363.143 kb on + strand at 363.260 kb on + strand at 363.261 kb on - strand at 363.261 kb on - strand at 363.261 kb on - strand at 363.261 kb on - strand at 363.601 kb on + strand, within EX31_RS06015 at 363.851 kb on - strand, within EX31_RS06015 at 363.969 kb on - strand, within EX31_RS06015 at 363.969 kb on - strand, within EX31_RS06015 at 364.006 kb on + strand, within EX31_RS06015 at 364.130 kb on + strand, within EX31_RS06015 at 364.130 kb on + strand, within EX31_RS06015 at 364.130 kb on + strand, within EX31_RS06015 at 364.131 kb on - strand, within EX31_RS06015 at 364.187 kb on - strand, within EX31_RS06015 at 364.219 kb on - strand, within EX31_RS06015 at 364.219 kb on - strand, within EX31_RS06015 at 364.219 kb on - strand, within EX31_RS06015 at 364.219 kb on - strand, within EX31_RS06015 at 364.373 kb on - strand, within EX31_RS06015 at 364.374 kb on + strand, within EX31_RS06015 at 364.374 kb on + strand, within EX31_RS06015 at 364.374 kb on + strand, within EX31_RS06015 at 364.374 kb on + strand, within EX31_RS06015 at 364.375 kb on - strand, within EX31_RS06015 at 364.375 kb on - strand, within EX31_RS06015 at 364.375 kb on - strand, within EX31_RS06015 at 364.375 kb on - strand, within EX31_RS06015 at 364.375 kb on - strand, within EX31_RS06015 at 364.375 kb on - strand, within EX31_RS06015 at 364.375 kb on - strand, within EX31_RS06015 at 364.465 kb on + strand, within EX31_RS06015 at 364.465 kb on + strand, within EX31_RS06015 at 364.466 kb on - strand, within EX31_RS06015 at 364.466 kb on - strand, within EX31_RS06015 at 364.466 kb on - strand, within EX31_RS06015 at 364.477 kb on - strand, within EX31_RS06015 at 364.495 kb on + strand, within EX31_RS06015 at 364.495 kb on + strand, within EX31_RS06015 at 364.496 kb on - strand, within EX31_RS06015 at 364.496 kb on - strand, within EX31_RS06015 at 364.496 kb on - strand, within EX31_RS06015 at 364.527 kb on + strand, within EX31_RS06015 at 364.528 kb on - strand, within EX31_RS06015 at 364.579 kb on - strand, within EX31_RS06015 at 364.596 kb on + strand, within EX31_RS06015 at 364.596 kb on + strand, within EX31_RS06015 at 364.596 kb on + strand, within EX31_RS06015 at 364.596 kb on + strand, within EX31_RS06015 at 364.596 kb on + strand, within EX31_RS06015 at 364.597 kb on - strand, within EX31_RS06015 at 364.597 kb on - strand, within EX31_RS06015 at 364.627 kb on + strand, within EX31_RS06015 at 364.627 kb on + strand, within EX31_RS06015 at 364.645 kb on + strand, within EX31_RS06015 at 364.645 kb on + strand, within EX31_RS06015 at 364.645 kb on + strand, within EX31_RS06015 at 364.646 kb on - strand, within EX31_RS06015 at 364.648 kb on + strand, within EX31_RS06015 at 364.648 kb on + strand, within EX31_RS06015 at 364.648 kb on + strand, within EX31_RS06015 at 364.648 kb on + strand, within EX31_RS06015 at 364.648 kb on + strand, within EX31_RS06015 at 364.648 kb on + strand, within EX31_RS06015 at 364.649 kb on - strand, within EX31_RS06015 at 364.649 kb on - strand, within EX31_RS06015 at 364.649 kb on - strand, within EX31_RS06015 at 364.650 kb on - strand, within EX31_RS06015 at 364.651 kb on + strand, within EX31_RS06015 at 364.651 kb on + strand, within EX31_RS06015 at 364.651 kb on + strand, within EX31_RS06015 at 364.652 kb on - strand, within EX31_RS06015 at 364.652 kb on - strand, within EX31_RS06015 at 364.652 kb on - strand, within EX31_RS06015 at 364.655 kb on - strand, within EX31_RS06015 at 364.780 kb on + strand, within EX31_RS06015 at 364.840 kb on + strand at 364.841 kb on - strand at 364.855 kb on + strand at 364.855 kb on + strand at 364.855 kb on + strand at 364.885 kb on + strand at 364.886 kb on - strand at 364.886 kb on - strand at 364.886 kb on - strand at 364.897 kb on + strand at 364.897 kb on + strand at 364.898 kb on - strand at 364.898 kb on - strand at 364.898 kb on - strand at 364.929 kb on + strand at 364.929 kb on + strand at 364.929 kb on + strand at 364.929 kb on + strand at 364.929 kb on + strand at 364.929 kb on + strand at 364.929 kb on + strand at 364.929 kb on + strand at 364.929 kb on + strand at 364.929 kb on + strand at 364.930 kb on - strand at 364.930 kb on - strand at 364.930 kb on - strand at 364.930 kb on - strand at 364.930 kb on - strand at 364.930 kb on - strand at 364.930 kb on - strand at 365.029 kb on - strand at 365.059 kb on + strand at 365.059 kb on + strand at 365.060 kb on - strand at 365.060 kb on - strand at 365.060 kb on - strand at 365.063 kb on + strand at 365.064 kb on - strand at 365.064 kb on - strand at 365.091 kb on - strand at 365.100 kb on + strand at 365.100 kb on + strand at 365.103 kb on + strand at 365.103 kb on + strand at 365.104 kb on - strand at 365.104 kb on - strand at 365.104 kb on - strand at 365.107 kb on + strand at 365.107 kb on + strand at 365.107 kb on + strand at 365.107 kb on + strand at 365.107 kb on + strand at 365.107 kb on + strand at 365.107 kb on + strand at 365.108 kb on - strand at 365.108 kb on - strand at 365.108 kb on - strand at 365.108 kb on - strand at 365.108 kb on - strand at 365.108 kb on - strand at 365.108 kb on - strand at 365.108 kb on - strand at 365.109 kb on + strand at 365.109 kb on + strand at 365.110 kb on - strand at 365.110 kb on - strand at 365.110 kb on - strand at 365.119 kb on - strand at 365.119 kb on - strand at 365.127 kb on + strand at 365.128 kb on - strand at 365.182 kb on - strand at 365.193 kb on + strand at 365.204 kb on + strand at 365.205 kb on - strand at 365.260 kb on - strand at 365.270 kb on + strand at 365.270 kb on + strand at 365.270 kb on + strand at 365.283 kb on + strand at 365.284 kb on - strand at 365.284 kb on - strand at 365.284 kb on - strand at 365.284 kb on - strand at 365.284 kb on - strand at 365.289 kb on + strand at 365.289 kb on + strand at 365.290 kb on - strand at 365.417 kb on + strand, within EX31_RS06020 at 365.417 kb on + strand, within EX31_RS06020 at 365.417 kb on + strand, within EX31_RS06020 at 365.420 kb on + strand, within EX31_RS06020 at 365.420 kb on + strand, within EX31_RS06020 at 365.420 kb on + strand, within EX31_RS06020 at 365.420 kb on + strand, within EX31_RS06020 at 365.421 kb on - strand, within EX31_RS06020 at 365.421 kb on - strand, within EX31_RS06020 at 365.421 kb on - strand, within EX31_RS06020 at 365.421 kb on - strand, within EX31_RS06020 at 365.462 kb on + strand, within EX31_RS06020 at 365.497 kb on + strand, within EX31_RS06020 at 365.498 kb on - strand, within EX31_RS06020 at 365.503 kb on + strand, within EX31_RS06020 at 365.504 kb on - strand, within EX31_RS06020 at 365.594 kb on - strand, within EX31_RS06020 at 365.594 kb on - strand, within EX31_RS06020 at 365.605 kb on - strand, within EX31_RS06020 at 365.605 kb on - strand, within EX31_RS06020 at 365.618 kb on + strand, within EX31_RS06020 at 365.618 kb on + strand, within EX31_RS06020 at 365.699 kb on + strand, within EX31_RS06020 at 365.699 kb on + strand, within EX31_RS06020 at 365.700 kb on - strand, within EX31_RS06020 at 365.700 kb on - strand, within EX31_RS06020 at 365.700 kb on - strand, within EX31_RS06020 at 365.734 kb on - strand, within EX31_RS06020 at 365.734 kb on - strand, within EX31_RS06020 at 365.826 kb on + strand, within EX31_RS06020 at 365.827 kb on - strand, within EX31_RS06020 at 365.866 kb on - strand, within EX31_RS06020 at 365.870 kb on + strand, within EX31_RS06020 at 365.913 kb on + strand, within EX31_RS06020 at 365.913 kb on + strand, within EX31_RS06020 at 365.913 kb on + strand, within EX31_RS06020 at 365.914 kb on - strand, within EX31_RS06020 at 365.914 kb on - strand, within EX31_RS06020 at 365.914 kb on - strand, within EX31_RS06020 at 365.966 kb on - strand, within EX31_RS06020
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 362,127 + -0.1 362,127 + +0.1 362,127 + -0.2 362,158 + +0.3 362,158 + +0.2 362,158 + -0.1 362,159 - +0.1 362,159 - +0.2 362,167 + -0.2 362,200 - +0.3 362,357 + EX31_RS06010 0.22 +0.3 362,358 - EX31_RS06010 0.22 +0.3 362,501 + EX31_RS06010 0.38 +0.2 362,501 + EX31_RS06010 0.38 -0.3 362,523 + EX31_RS06010 0.41 -0.3 362,524 - EX31_RS06010 0.41 +2.5 362,524 - EX31_RS06010 0.41 +0.1 362,539 - EX31_RS06010 0.42 -0.0 362,642 + EX31_RS06010 0.54 -1.5 362,672 + EX31_RS06010 0.57 +0.9 362,673 - EX31_RS06010 0.58 +0.1 362,676 + EX31_RS06010 0.58 +0.1 362,677 - EX31_RS06010 0.58 -0.1 362,677 - EX31_RS06010 0.58 +0.1 362,677 - EX31_RS06010 0.58 -0.5 362,677 - EX31_RS06010 0.58 -0.4 362,737 + EX31_RS06010 0.65 -0.2 362,738 - EX31_RS06010 0.65 -0.9 362,816 + EX31_RS06010 0.74 -0.1 362,816 + EX31_RS06010 0.74 +0.1 362,817 - EX31_RS06010 0.74 +0.1 362,817 - EX31_RS06010 0.74 -0.5 362,817 - EX31_RS06010 0.74 +0.2 362,817 - EX31_RS06010 0.74 -0.5 362,817 - EX31_RS06010 0.74 +0.7 362,944 + EX31_RS06010 0.88 -0.5 362,975 + -0.2 363,019 + -0.6 363,019 + -0.7 363,020 - -0.1 363,045 - -0.2 363,045 - +0.2 363,055 - +0.2 363,133 + -0.1 363,133 + -0.2 363,133 + +0.2 363,133 + -0.1 363,133 + -1.1 363,134 - -0.4 363,143 + +0.0 363,143 + +0.4 363,143 + +0.1 363,260 + +0.5 363,261 - -0.7 363,261 - -0.2 363,261 - -1.0 363,261 - -0.2 363,601 + EX31_RS06015 0.25 +0.7 363,851 - EX31_RS06015 0.38 +0.5 363,969 - EX31_RS06015 0.45 +0.1 363,969 - EX31_RS06015 0.45 -1.4 364,006 + EX31_RS06015 0.46 -0.0 364,130 + EX31_RS06015 0.53 -0.7 364,130 + EX31_RS06015 0.53 +0.3 364,130 + EX31_RS06015 0.53 -0.8 364,131 - EX31_RS06015 0.53 -0.1 364,187 - EX31_RS06015 0.56 +0.0 364,219 - EX31_RS06015 0.58 -0.8 364,219 - EX31_RS06015 0.58 -0.3 364,219 - EX31_RS06015 0.58 +1.1 364,219 - EX31_RS06015 0.58 +0.3 364,373 - EX31_RS06015 0.66 +0.1 364,374 + EX31_RS06015 0.66 -1.7 364,374 + EX31_RS06015 0.66 -0.1 364,374 + EX31_RS06015 0.66 +0.2 364,374 + EX31_RS06015 0.66 +0.2 364,375 - EX31_RS06015 0.66 -0.0 364,375 - EX31_RS06015 0.66 +0.6 364,375 - EX31_RS06015 0.66 +0.6 364,375 - EX31_RS06015 0.66 +0.5 364,375 - EX31_RS06015 0.66 -0.5 364,375 - EX31_RS06015 0.66 -0.9 364,375 - EX31_RS06015 0.66 -0.5 364,465 + EX31_RS06015 0.71 +0.5 364,465 + EX31_RS06015 0.71 -0.6 364,466 - EX31_RS06015 0.71 -0.1 364,466 - EX31_RS06015 0.71 +0.4 364,466 - EX31_RS06015 0.71 +0.3 364,477 - EX31_RS06015 0.71 -0.5 364,495 + EX31_RS06015 0.72 +0.5 364,495 + EX31_RS06015 0.72 -0.6 364,496 - EX31_RS06015 0.72 +0.0 364,496 - EX31_RS06015 0.72 -0.8 364,496 - EX31_RS06015 0.72 -1.0 364,527 + EX31_RS06015 0.74 -0.0 364,528 - EX31_RS06015 0.74 +0.4 364,579 - EX31_RS06015 0.77 -1.4 364,596 + EX31_RS06015 0.78 -0.1 364,596 + EX31_RS06015 0.78 +0.2 364,596 + EX31_RS06015 0.78 -1.1 364,596 + EX31_RS06015 0.78 -0.5 364,596 + EX31_RS06015 0.78 +0.1 364,597 - EX31_RS06015 0.78 +0.0 364,597 - EX31_RS06015 0.78 -0.5 364,627 + EX31_RS06015 0.79 -0.3 364,627 + EX31_RS06015 0.79 +0.0 364,645 + EX31_RS06015 0.80 +0.1 364,645 + EX31_RS06015 0.80 -0.9 364,645 + EX31_RS06015 0.80 +0.0 364,646 - EX31_RS06015 0.80 +0.0 364,648 + EX31_RS06015 0.80 -0.0 364,648 + EX31_RS06015 0.80 -0.2 364,648 + EX31_RS06015 0.80 -0.6 364,648 + EX31_RS06015 0.80 +0.4 364,648 + EX31_RS06015 0.80 -0.1 364,648 + EX31_RS06015 0.80 -0.1 364,649 - EX31_RS06015 0.80 +0.1 364,649 - EX31_RS06015 0.80 +0.2 364,649 - EX31_RS06015 0.80 +1.0 364,650 - EX31_RS06015 0.80 +0.1 364,651 + EX31_RS06015 0.80 -0.2 364,651 + EX31_RS06015 0.80 +1.2 364,651 + EX31_RS06015 0.80 -0.3 364,652 - EX31_RS06015 0.81 +0.2 364,652 - EX31_RS06015 0.81 -0.3 364,652 - EX31_RS06015 0.81 -0.0 364,655 - EX31_RS06015 0.81 +0.2 364,780 + EX31_RS06015 0.87 +0.5 364,840 + -0.1 364,841 - -0.5 364,855 + -1.2 364,855 + -0.5 364,855 + +0.8 364,885 + +0.5 364,886 - -0.0 364,886 - +1.3 364,886 - +0.7 364,897 + +0.4 364,897 + +0.0 364,898 - -0.5 364,898 - +0.1 364,898 - -0.6 364,929 + +0.1 364,929 + -0.7 364,929 + +1.4 364,929 + +0.1 364,929 + -0.3 364,929 + +0.6 364,929 + -0.1 364,929 + +0.3 364,929 + +0.2 364,929 + -0.5 364,930 - -0.1 364,930 - +0.4 364,930 - -0.5 364,930 - -1.0 364,930 - -0.7 364,930 - -0.4 364,930 - -1.2 365,029 - +0.2 365,059 + +0.4 365,059 + +0.6 365,060 - -0.1 365,060 - +0.6 365,060 - -0.2 365,063 + -0.6 365,064 - +0.0 365,064 - -0.3 365,091 - -0.5 365,100 + +0.4 365,100 + +0.5 365,103 + -0.7 365,103 + -0.1 365,104 - -0.8 365,104 - -1.0 365,104 - +0.0 365,107 + -0.2 365,107 + +0.1 365,107 + +0.2 365,107 + -1.0 365,107 + -1.2 365,107 + +0.4 365,107 + +0.4 365,108 - -0.3 365,108 - -0.2 365,108 - +0.1 365,108 - +0.3 365,108 - -0.1 365,108 - +0.7 365,108 - -0.6 365,108 - -0.2 365,109 + +0.7 365,109 + -0.6 365,110 - -0.1 365,110 - -0.4 365,110 - -0.8 365,119 - -0.4 365,119 - -0.4 365,127 + +1.0 365,128 - -0.5 365,182 - -0.3 365,193 + -0.1 365,204 + +1.0 365,205 - +1.5 365,260 - -0.7 365,270 + +0.0 365,270 + +0.9 365,270 + +0.7 365,283 + +0.0 365,284 - +0.5 365,284 - +0.4 365,284 - -0.9 365,284 - -0.1 365,284 - -0.3 365,289 + +0.1 365,289 + -0.2 365,290 - -0.6 365,417 + EX31_RS06020 0.10 -0.5 365,417 + EX31_RS06020 0.10 -1.7 365,417 + EX31_RS06020 0.10 -0.6 365,420 + EX31_RS06020 0.10 -1.0 365,420 + EX31_RS06020 0.10 -0.7 365,420 + EX31_RS06020 0.10 +0.1 365,420 + EX31_RS06020 0.10 -0.2 365,421 - EX31_RS06020 0.11 -0.1 365,421 - EX31_RS06020 0.11 -0.0 365,421 - EX31_RS06020 0.11 -0.5 365,421 - EX31_RS06020 0.11 +0.9 365,462 + EX31_RS06020 0.16 +0.3 365,497 + EX31_RS06020 0.21 -1.4 365,498 - EX31_RS06020 0.21 +0.6 365,503 + EX31_RS06020 0.22 -0.8 365,504 - EX31_RS06020 0.22 -1.8 365,594 - EX31_RS06020 0.34 -0.9 365,594 - EX31_RS06020 0.34 -0.3 365,605 - EX31_RS06020 0.36 -0.6 365,605 - EX31_RS06020 0.36 +0.3 365,618 + EX31_RS06020 0.38 -0.8 365,618 + EX31_RS06020 0.38 +0.5 365,699 + EX31_RS06020 0.49 +0.1 365,699 + EX31_RS06020 0.49 -1.3 365,700 - EX31_RS06020 0.49 -0.4 365,700 - EX31_RS06020 0.49 -1.2 365,700 - EX31_RS06020 0.49 -2.0 365,734 - EX31_RS06020 0.54 -0.5 365,734 - EX31_RS06020 0.54 -0.9 365,826 + EX31_RS06020 0.66 -0.9 365,827 - EX31_RS06020 0.67 -1.5 365,866 - EX31_RS06020 0.72 -0.0 365,870 + EX31_RS06020 0.72 -0.8 365,913 + EX31_RS06020 0.78 -2.1 365,913 + EX31_RS06020 0.78 -0.6 365,913 + EX31_RS06020 0.78 -0.4 365,914 - EX31_RS06020 0.79 -0.5 365,914 - EX31_RS06020 0.79 -0.9 365,914 - EX31_RS06020 0.79 -0.4 365,966 - EX31_RS06020 0.86 -1.6
Or see this region's nucleotide sequence