Strain Fitness in Rahnella sp. WP5 around EX31_RS05545

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05535 and EX31_RS05540 overlap by 4 nucleotidesEX31_RS05540 and EX31_RS05545 overlap by 8 nucleotidesEX31_RS05545 and EX31_RS05550 overlap by 1 nucleotidesEX31_RS05550 and EX31_RS05555 are separated by 19 nucleotides EX31_RS05535: EX31_RS05535 - ABC transporter permease, at 262,133 to 263,218 _RS05535 EX31_RS05540: EX31_RS05540 - ABC transporter permease, at 263,215 to 264,150 _RS05540 EX31_RS05545: EX31_RS05545 - ABC transporter ATP-binding protein, at 264,143 to 265,009 _RS05545 EX31_RS05550: EX31_RS05550 - ABC transporter ATP-binding protein, at 265,009 to 265,791 _RS05550 EX31_RS05555: EX31_RS05555 - MmgE/PrpD family protein, at 265,811 to 267,190 _RS05555 Position (kb) 264 265 266Strain fitness (log2 ratio) -2 -1 0 1at 263.161 kb on + strandat 263.162 kb on - strandat 263.355 kb on + strand, within EX31_RS05540at 263.356 kb on - strand, within EX31_RS05540at 263.356 kb on - strand, within EX31_RS05540at 263.356 kb on - strand, within EX31_RS05540at 263.392 kb on - strand, within EX31_RS05540at 263.436 kb on + strand, within EX31_RS05540at 263.437 kb on - strand, within EX31_RS05540at 263.437 kb on - strand, within EX31_RS05540at 263.437 kb on - strand, within EX31_RS05540at 263.441 kb on - strand, within EX31_RS05540at 263.441 kb on - strand, within EX31_RS05540at 263.441 kb on - strand, within EX31_RS05540at 263.441 kb on - strand, within EX31_RS05540at 263.521 kb on + strand, within EX31_RS05540at 263.521 kb on + strand, within EX31_RS05540at 263.521 kb on + strand, within EX31_RS05540at 263.521 kb on + strand, within EX31_RS05540at 263.522 kb on - strand, within EX31_RS05540at 263.522 kb on - strand, within EX31_RS05540at 263.522 kb on - strand, within EX31_RS05540at 263.536 kb on + strand, within EX31_RS05540at 263.536 kb on + strand, within EX31_RS05540at 263.536 kb on + strand, within EX31_RS05540at 263.536 kb on + strand, within EX31_RS05540at 263.547 kb on + strand, within EX31_RS05540at 263.557 kb on + strand, within EX31_RS05540at 263.557 kb on + strand, within EX31_RS05540at 263.557 kb on + strand, within EX31_RS05540at 263.557 kb on + strand, within EX31_RS05540at 263.557 kb on + strand, within EX31_RS05540at 263.557 kb on + strand, within EX31_RS05540at 263.557 kb on + strand, within EX31_RS05540at 263.557 kb on + strand, within EX31_RS05540at 263.557 kb on + strand, within EX31_RS05540at 263.558 kb on - strand, within EX31_RS05540at 263.558 kb on - strand, within EX31_RS05540at 263.558 kb on - strand, within EX31_RS05540at 263.558 kb on - strand, within EX31_RS05540at 263.929 kb on - strand, within EX31_RS05540at 264.128 kb on + strandat 264.128 kb on + strandat 264.181 kb on + strandat 264.181 kb on + strandat 264.181 kb on + strandat 264.181 kb on + strandat 264.181 kb on + strandat 264.181 kb on + strandat 264.181 kb on + strandat 264.182 kb on - strandat 264.182 kb on - strandat 264.182 kb on - strandat 264.182 kb on - strandat 264.182 kb on - strandat 264.182 kb on - strandat 264.182 kb on - strandat 264.224 kb on - strandat 264.427 kb on + strand, within EX31_RS05545at 264.428 kb on - strand, within EX31_RS05545at 264.428 kb on - strand, within EX31_RS05545at 264.481 kb on + strand, within EX31_RS05545at 264.730 kb on - strand, within EX31_RS05545at 264.772 kb on + strand, within EX31_RS05545at 264.776 kb on - strand, within EX31_RS05545at 264.827 kb on + strand, within EX31_RS05545at 264.827 kb on + strand, within EX31_RS05545at 264.828 kb on - strand, within EX31_RS05545at 264.828 kb on - strand, within EX31_RS05545at 264.838 kb on + strand, within EX31_RS05545at 264.838 kb on + strand, within EX31_RS05545at 264.839 kb on - strand, within EX31_RS05545at 264.839 kb on - strand, within EX31_RS05545at 264.871 kb on + strand, within EX31_RS05545at 264.887 kb on + strand, within EX31_RS05545at 264.887 kb on + strand, within EX31_RS05545at 264.888 kb on - strand, within EX31_RS05545at 264.947 kb on - strandat 264.984 kb on + strandat 264.985 kb on - strandat 264.986 kb on + strandat 265.153 kb on + strand, within EX31_RS05550at 265.276 kb on - strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.283 kb on - strand, within EX31_RS05550at 265.283 kb on - strand, within EX31_RS05550at 265.295 kb on + strand, within EX31_RS05550at 265.296 kb on - strand, within EX31_RS05550at 265.296 kb on - strand, within EX31_RS05550at 265.318 kb on + strand, within EX31_RS05550at 265.318 kb on + strand, within EX31_RS05550at 265.318 kb on + strand, within EX31_RS05550at 265.319 kb on - strand, within EX31_RS05550at 265.319 kb on - strand, within EX31_RS05550at 265.348 kb on + strand, within EX31_RS05550at 265.529 kb on + strand, within EX31_RS05550at 265.627 kb on + strand, within EX31_RS05550at 265.628 kb on - strand, within EX31_RS05550at 265.756 kb on + strandat 265.757 kb on - strandat 265.757 kb on - strandat 265.919 kb on + strandat 265.919 kb on + strandat 265.919 kb on + strandat 265.919 kb on + strandat 265.920 kb on - strandat 265.920 kb on - strandat 265.973 kb on + strand, within EX31_RS05555at 265.973 kb on + strand, within EX31_RS05555at 265.974 kb on - strand, within EX31_RS05555at 265.974 kb on - strand, within EX31_RS05555at 265.978 kb on + strand, within EX31_RS05555at 265.979 kb on - strand, within EX31_RS05555

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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263,161 + -0.8
263,162 - -0.1
263,355 + EX31_RS05540 0.15 -0.4
263,356 - EX31_RS05540 0.15 -0.7
263,356 - EX31_RS05540 0.15 -0.5
263,356 - EX31_RS05540 0.15 -0.1
263,392 - EX31_RS05540 0.19 -0.2
263,436 + EX31_RS05540 0.24 +0.9
263,437 - EX31_RS05540 0.24 +0.7
263,437 - EX31_RS05540 0.24 +0.5
263,437 - EX31_RS05540 0.24 +1.7
263,441 - EX31_RS05540 0.24 -0.1
263,441 - EX31_RS05540 0.24 +0.4
263,441 - EX31_RS05540 0.24 -0.1
263,441 - EX31_RS05540 0.24 -0.1
263,521 + EX31_RS05540 0.33 -0.5
263,521 + EX31_RS05540 0.33 +0.2
263,521 + EX31_RS05540 0.33 +1.2
263,521 + EX31_RS05540 0.33 -0.5
263,522 - EX31_RS05540 0.33 +0.0
263,522 - EX31_RS05540 0.33 -0.6
263,522 - EX31_RS05540 0.33 -0.2
263,536 + EX31_RS05540 0.34 +0.0
263,536 + EX31_RS05540 0.34 -0.5
263,536 + EX31_RS05540 0.34 +0.2
263,536 + EX31_RS05540 0.34 +0.5
263,547 + EX31_RS05540 0.35 +0.3
263,557 + EX31_RS05540 0.37 +0.2
263,557 + EX31_RS05540 0.37 +0.3
263,557 + EX31_RS05540 0.37 +0.1
263,557 + EX31_RS05540 0.37 -1.0
263,557 + EX31_RS05540 0.37 +1.0
263,557 + EX31_RS05540 0.37 +1.5
263,557 + EX31_RS05540 0.37 +0.3
263,557 + EX31_RS05540 0.37 +0.8
263,557 + EX31_RS05540 0.37 +0.1
263,558 - EX31_RS05540 0.37 -1.0
263,558 - EX31_RS05540 0.37 +0.2
263,558 - EX31_RS05540 0.37 +0.2
263,558 - EX31_RS05540 0.37 +0.0
263,929 - EX31_RS05540 0.76 -0.7
264,128 + +0.1
264,128 + +0.2
264,181 + +0.3
264,181 + -0.5
264,181 + -0.2
264,181 + +0.1
264,181 + -0.2
264,181 + -0.1
264,181 + -0.0
264,182 - -0.5
264,182 - +0.8
264,182 - -0.0
264,182 - -0.5
264,182 - -0.0
264,182 - +0.4
264,182 - -0.2
264,224 - +0.0
264,427 + EX31_RS05545 0.33 +0.1
264,428 - EX31_RS05545 0.33 +0.7
264,428 - EX31_RS05545 0.33 +0.5
264,481 + EX31_RS05545 0.39 +0.5
264,730 - EX31_RS05545 0.68 +1.0
264,772 + EX31_RS05545 0.73 -1.2
264,776 - EX31_RS05545 0.73 +1.0
264,827 + EX31_RS05545 0.79 +0.3
264,827 + EX31_RS05545 0.79 -0.3
264,828 - EX31_RS05545 0.79 -0.1
264,828 - EX31_RS05545 0.79 +0.4
264,838 + EX31_RS05545 0.80 -0.2
264,838 + EX31_RS05545 0.80 -0.1
264,839 - EX31_RS05545 0.80 +1.0
264,839 - EX31_RS05545 0.80 -0.4
264,871 + EX31_RS05545 0.84 +0.3
264,887 + EX31_RS05545 0.86 +0.0
264,887 + EX31_RS05545 0.86 -0.6
264,888 - EX31_RS05545 0.86 -0.2
264,947 - +0.5
264,984 + -0.7
264,985 - -0.4
264,986 + -1.0
265,153 + EX31_RS05550 0.18 -0.4
265,276 - EX31_RS05550 0.34 +0.1
265,282 + EX31_RS05550 0.35 +0.1
265,282 + EX31_RS05550 0.35 -0.7
265,282 + EX31_RS05550 0.35 -0.2
265,282 + EX31_RS05550 0.35 +0.6
265,282 + EX31_RS05550 0.35 -0.0
265,282 + EX31_RS05550 0.35 +0.1
265,283 - EX31_RS05550 0.35 -0.1
265,283 - EX31_RS05550 0.35 +0.3
265,295 + EX31_RS05550 0.37 +0.5
265,296 - EX31_RS05550 0.37 -0.2
265,296 - EX31_RS05550 0.37 +0.5
265,318 + EX31_RS05550 0.39 -0.2
265,318 + EX31_RS05550 0.39 -0.1
265,318 + EX31_RS05550 0.39 +0.4
265,319 - EX31_RS05550 0.40 +0.1
265,319 - EX31_RS05550 0.40 +0.2
265,348 + EX31_RS05550 0.43 -0.4
265,529 + EX31_RS05550 0.66 -0.2
265,627 + EX31_RS05550 0.79 -0.2
265,628 - EX31_RS05550 0.79 +0.0
265,756 + +0.5
265,757 - -0.9
265,757 - -0.5
265,919 + -1.2
265,919 + -0.1
265,919 + -0.4
265,919 + +0.9
265,920 - -0.3
265,920 - -2.0
265,973 + EX31_RS05555 0.12 -0.8
265,973 + EX31_RS05555 0.12 -0.0
265,974 - EX31_RS05555 0.12 -0.0
265,974 - EX31_RS05555 0.12 +0.1
265,978 + EX31_RS05555 0.12 -1.4
265,979 - EX31_RS05555 0.12 +0.0

Or see this region's nucleotide sequence