Strain Fitness in Rahnella sp. WP5 around EX31_RS03380

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03375 and EX31_RS03380 are separated by 28 nucleotidesEX31_RS03380 and EX31_RS03385 are separated by 430 nucleotides EX31_RS03375: EX31_RS03375 - polyamine aminopropyltransferase, at 162,711 to 163,586 _RS03375 EX31_RS03380: EX31_RS03380 - adenosylmethionine decarboxylase, at 163,615 to 164,409 _RS03380 EX31_RS03385: EX31_RS03385 - hypothetical protein, at 164,840 to 165,715 _RS03385 Position (kb) 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 162.656 kb on + strandat 162.656 kb on + strandat 162.656 kb on + strandat 162.657 kb on - strandat 162.657 kb on - strandat 162.657 kb on - strandat 162.657 kb on - strandat 162.660 kb on + strandat 162.660 kb on + strandat 162.660 kb on + strandat 162.661 kb on - strandat 162.740 kb on - strandat 162.740 kb on - strandat 162.744 kb on + strandat 162.744 kb on + strandat 162.744 kb on + strandat 162.744 kb on + strandat 162.744 kb on + strandat 162.744 kb on + strandat 162.745 kb on - strandat 162.774 kb on + strandat 162.796 kb on + strandat 162.796 kb on + strandat 162.797 kb on - strandat 162.798 kb on + strandat 162.798 kb on + strandat 163.080 kb on + strand, within EX31_RS03375at 163.080 kb on + strand, within EX31_RS03375at 163.095 kb on - strand, within EX31_RS03375at 163.095 kb on - strand, within EX31_RS03375at 163.107 kb on + strand, within EX31_RS03375at 163.108 kb on - strand, within EX31_RS03375at 163.108 kb on - strand, within EX31_RS03375at 163.233 kb on - strand, within EX31_RS03375at 163.245 kb on + strand, within EX31_RS03375at 163.245 kb on + strand, within EX31_RS03375at 163.246 kb on - strand, within EX31_RS03375at 163.246 kb on - strand, within EX31_RS03375at 163.357 kb on - strand, within EX31_RS03375at 163.398 kb on + strand, within EX31_RS03375at 163.398 kb on + strand, within EX31_RS03375at 163.398 kb on + strand, within EX31_RS03375at 163.399 kb on - strand, within EX31_RS03375at 163.399 kb on - strand, within EX31_RS03375at 163.402 kb on - strand, within EX31_RS03375at 163.402 kb on - strand, within EX31_RS03375at 163.498 kb on + strand, within EX31_RS03375at 163.498 kb on + strand, within EX31_RS03375at 163.498 kb on + strand, within EX31_RS03375at 163.498 kb on + strand, within EX31_RS03375at 163.498 kb on + strand, within EX31_RS03375at 163.499 kb on - strandat 163.499 kb on - strandat 163.499 kb on - strandat 163.499 kb on - strandat 163.499 kb on - strandat 163.499 kb on - strandat 163.499 kb on - strandat 163.512 kb on + strandat 163.512 kb on + strandat 163.512 kb on + strandat 163.513 kb on - strandat 163.554 kb on + strandat 163.554 kb on + strandat 163.555 kb on - strandat 163.555 kb on - strandat 163.558 kb on + strandat 163.559 kb on - strandat 163.588 kb on - strandat 163.588 kb on - strandat 163.588 kb on - strandat 163.588 kb on - strandat 163.611 kb on + strandat 163.611 kb on + strandat 163.611 kb on + strandat 163.611 kb on + strandat 163.611 kb on + strandat 163.612 kb on - strandat 163.612 kb on - strandat 163.671 kb on + strandat 163.672 kb on - strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.675 kb on + strandat 163.676 kb on - strandat 163.676 kb on - strandat 163.676 kb on - strandat 163.676 kb on - strandat 163.687 kb on + strandat 163.687 kb on + strandat 163.687 kb on + strandat 163.687 kb on + strandat 163.717 kb on + strand, within EX31_RS03380at 163.717 kb on + strand, within EX31_RS03380at 163.717 kb on + strand, within EX31_RS03380at 163.717 kb on + strand, within EX31_RS03380at 163.717 kb on + strand, within EX31_RS03380at 163.718 kb on - strand, within EX31_RS03380at 163.726 kb on + strand, within EX31_RS03380at 163.726 kb on + strand, within EX31_RS03380at 163.727 kb on - strand, within EX31_RS03380at 163.727 kb on - strand, within EX31_RS03380at 163.727 kb on - strand, within EX31_RS03380at 163.727 kb on - strand, within EX31_RS03380at 163.741 kb on + strand, within EX31_RS03380at 163.741 kb on + strand, within EX31_RS03380at 163.742 kb on - strand, within EX31_RS03380at 163.742 kb on - strand, within EX31_RS03380at 163.742 kb on - strand, within EX31_RS03380at 163.742 kb on - strand, within EX31_RS03380at 163.743 kb on + strand, within EX31_RS03380at 163.743 kb on + strand, within EX31_RS03380at 163.744 kb on - strand, within EX31_RS03380at 163.744 kb on - strand, within EX31_RS03380at 163.788 kb on + strand, within EX31_RS03380at 163.857 kb on - strand, within EX31_RS03380at 163.953 kb on + strand, within EX31_RS03380at 163.954 kb on - strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.965 kb on + strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.966 kb on - strand, within EX31_RS03380at 163.969 kb on + strand, within EX31_RS03380at 164.066 kb on - strand, within EX31_RS03380at 164.066 kb on - strand, within EX31_RS03380at 164.066 kb on - strand, within EX31_RS03380at 164.152 kb on + strand, within EX31_RS03380at 164.152 kb on + strand, within EX31_RS03380at 164.152 kb on + strand, within EX31_RS03380at 164.152 kb on + strand, within EX31_RS03380at 164.152 kb on + strand, within EX31_RS03380at 164.153 kb on - strand, within EX31_RS03380at 164.153 kb on - strand, within EX31_RS03380at 164.153 kb on - strand, within EX31_RS03380at 164.212 kb on + strand, within EX31_RS03380at 164.213 kb on - strand, within EX31_RS03380at 164.213 kb on - strand, within EX31_RS03380at 164.293 kb on + strand, within EX31_RS03380at 164.293 kb on + strand, within EX31_RS03380at 164.293 kb on + strand, within EX31_RS03380at 164.294 kb on - strand, within EX31_RS03380at 164.359 kb on + strandat 164.360 kb on - strandat 164.383 kb on + strandat 164.518 kb on + strandat 164.519 kb on - strandat 164.605 kb on + strandat 164.671 kb on - strandat 164.749 kb on - strandat 164.753 kb on - strandat 164.779 kb on + strandat 164.801 kb on - strandat 164.801 kb on - strandat 164.824 kb on + strandat 164.824 kb on + strandat 164.825 kb on - strandat 164.960 kb on + strand, within EX31_RS03385at 164.960 kb on + strand, within EX31_RS03385at 164.960 kb on + strand, within EX31_RS03385at 164.961 kb on - strand, within EX31_RS03385at 164.969 kb on + strand, within EX31_RS03385at 164.986 kb on + strand, within EX31_RS03385at 164.986 kb on + strand, within EX31_RS03385at 164.986 kb on + strand, within EX31_RS03385at 164.986 kb on + strand, within EX31_RS03385at 164.986 kb on + strand, within EX31_RS03385at 164.987 kb on - strand, within EX31_RS03385at 165.008 kb on - strand, within EX31_RS03385at 165.008 kb on - strand, within EX31_RS03385at 165.010 kb on + strand, within EX31_RS03385at 165.020 kb on - strand, within EX31_RS03385at 165.023 kb on + strand, within EX31_RS03385at 165.023 kb on + strand, within EX31_RS03385at 165.023 kb on + strand, within EX31_RS03385at 165.024 kb on - strand, within EX31_RS03385at 165.071 kb on - strand, within EX31_RS03385at 165.074 kb on + strand, within EX31_RS03385at 165.074 kb on + strand, within EX31_RS03385at 165.074 kb on + strand, within EX31_RS03385at 165.074 kb on + strand, within EX31_RS03385at 165.075 kb on - strand, within EX31_RS03385at 165.075 kb on - strand, within EX31_RS03385at 165.097 kb on - strand, within EX31_RS03385at 165.099 kb on + strand, within EX31_RS03385at 165.099 kb on + strand, within EX31_RS03385at 165.142 kb on + strand, within EX31_RS03385at 165.142 kb on + strand, within EX31_RS03385at 165.142 kb on + strand, within EX31_RS03385at 165.142 kb on + strand, within EX31_RS03385at 165.142 kb on + strand, within EX31_RS03385at 165.142 kb on + strand, within EX31_RS03385at 165.142 kb on + strand, within EX31_RS03385at 165.151 kb on + strand, within EX31_RS03385at 165.203 kb on + strand, within EX31_RS03385at 165.203 kb on + strand, within EX31_RS03385at 165.206 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.332 kb on + strand, within EX31_RS03385at 165.333 kb on - strand, within EX31_RS03385at 165.333 kb on - strand, within EX31_RS03385at 165.333 kb on - strand, within EX31_RS03385at 165.333 kb on - strand, within EX31_RS03385at 165.333 kb on - strand, within EX31_RS03385at 165.334 kb on + strand, within EX31_RS03385at 165.334 kb on + strand, within EX31_RS03385at 165.334 kb on + strand, within EX31_RS03385at 165.335 kb on - strand, within EX31_RS03385at 165.335 kb on - strand, within EX31_RS03385at 165.335 kb on - strand, within EX31_RS03385at 165.362 kb on + strand, within EX31_RS03385

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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162,656 + -0.2
162,656 + +0.4
162,656 + -0.8
162,657 - -0.1
162,657 - +1.1
162,657 - -0.4
162,657 - +1.0
162,660 + +0.3
162,660 + -0.3
162,660 + -0.8
162,661 - +0.3
162,740 - +0.5
162,740 - -0.5
162,744 + -0.5
162,744 + +0.1
162,744 + +0.5
162,744 + +0.3
162,744 + +0.3
162,744 + +0.5
162,745 - -1.3
162,774 + -0.7
162,796 + +0.3
162,796 + +0.9
162,797 - +0.1
162,798 + +0.2
162,798 + -0.2
163,080 + EX31_RS03375 0.42 +0.4
163,080 + EX31_RS03375 0.42 +0.4
163,095 - EX31_RS03375 0.44 -0.3
163,095 - EX31_RS03375 0.44 -0.2
163,107 + EX31_RS03375 0.45 +0.3
163,108 - EX31_RS03375 0.45 +0.2
163,108 - EX31_RS03375 0.45 -1.4
163,233 - EX31_RS03375 0.60 +0.9
163,245 + EX31_RS03375 0.61 -0.4
163,245 + EX31_RS03375 0.61 -0.1
163,246 - EX31_RS03375 0.61 -1.4
163,246 - EX31_RS03375 0.61 -1.3
163,357 - EX31_RS03375 0.74 -0.3
163,398 + EX31_RS03375 0.78 -0.5
163,398 + EX31_RS03375 0.78 +0.6
163,398 + EX31_RS03375 0.78 -0.3
163,399 - EX31_RS03375 0.79 +0.5
163,399 - EX31_RS03375 0.79 +0.6
163,402 - EX31_RS03375 0.79 -0.4
163,402 - EX31_RS03375 0.79 -0.6
163,498 + EX31_RS03375 0.90 +0.2
163,498 + EX31_RS03375 0.90 +0.1
163,498 + EX31_RS03375 0.90 +0.1
163,498 + EX31_RS03375 0.90 +0.0
163,498 + EX31_RS03375 0.90 -0.2
163,499 - +0.7
163,499 - +0.9
163,499 - +1.1
163,499 - +0.3
163,499 - -0.3
163,499 - -1.7
163,499 - +0.4
163,512 + +0.0
163,512 + +0.7
163,512 + -0.6
163,513 - +0.5
163,554 + +0.6
163,554 + -0.5
163,555 - -0.7
163,555 - -0.5
163,558 + -0.7
163,559 - +1.9
163,588 - -0.7
163,588 - +0.5
163,588 - +0.8
163,588 - -0.9
163,611 + +0.2
163,611 + -0.1
163,611 + +0.0
163,611 + +0.2
163,611 + -0.4
163,612 - -0.9
163,612 - -0.6
163,671 + -0.1
163,672 - +0.6
163,675 + +0.2
163,675 + +1.0
163,675 + +1.4
163,675 + -0.7
163,675 + -1.1
163,675 + -0.2
163,675 + +0.3
163,675 + -0.5
163,675 + -0.1
163,675 + +0.7
163,675 + -0.6
163,675 + +1.3
163,676 - +1.3
163,676 - +0.5
163,676 - +0.0
163,676 - -0.7
163,687 + -0.5
163,687 + +0.4
163,687 + +0.9
163,687 + +0.3
163,717 + EX31_RS03380 0.13 +1.4
163,717 + EX31_RS03380 0.13 +0.6
163,717 + EX31_RS03380 0.13 +0.1
163,717 + EX31_RS03380 0.13 -1.1
163,717 + EX31_RS03380 0.13 +0.1
163,718 - EX31_RS03380 0.13 +1.3
163,726 + EX31_RS03380 0.14 +0.3
163,726 + EX31_RS03380 0.14 -0.1
163,727 - EX31_RS03380 0.14 +0.2
163,727 - EX31_RS03380 0.14 -0.8
163,727 - EX31_RS03380 0.14 -0.2
163,727 - EX31_RS03380 0.14 +0.8
163,741 + EX31_RS03380 0.16 +0.0
163,741 + EX31_RS03380 0.16 -0.0
163,742 - EX31_RS03380 0.16 -0.3
163,742 - EX31_RS03380 0.16 -1.0
163,742 - EX31_RS03380 0.16 -0.8
163,742 - EX31_RS03380 0.16 -0.3
163,743 + EX31_RS03380 0.16 +1.0
163,743 + EX31_RS03380 0.16 +0.6
163,744 - EX31_RS03380 0.16 +0.2
163,744 - EX31_RS03380 0.16 +0.5
163,788 + EX31_RS03380 0.22 +0.3
163,857 - EX31_RS03380 0.30 -0.5
163,953 + EX31_RS03380 0.43 -0.9
163,954 - EX31_RS03380 0.43 +0.5
163,965 + EX31_RS03380 0.44 +0.9
163,965 + EX31_RS03380 0.44 +0.2
163,965 + EX31_RS03380 0.44 -0.5
163,965 + EX31_RS03380 0.44 -0.5
163,965 + EX31_RS03380 0.44 +0.5
163,965 + EX31_RS03380 0.44 -0.3
163,965 + EX31_RS03380 0.44 -0.2
163,965 + EX31_RS03380 0.44 -0.2
163,965 + EX31_RS03380 0.44 +0.5
163,965 + EX31_RS03380 0.44 +0.3
163,965 + EX31_RS03380 0.44 -0.5
163,965 + EX31_RS03380 0.44 +0.4
163,965 + EX31_RS03380 0.44 +0.0
163,965 + EX31_RS03380 0.44 +0.1
163,965 + EX31_RS03380 0.44 +0.7
163,965 + EX31_RS03380 0.44 -1.2
163,965 + EX31_RS03380 0.44 +0.1
163,965 + EX31_RS03380 0.44 -0.6
163,965 + EX31_RS03380 0.44 +0.2
163,965 + EX31_RS03380 0.44 +0.1
163,966 - EX31_RS03380 0.44 +0.5
163,966 - EX31_RS03380 0.44 -1.0
163,966 - EX31_RS03380 0.44 +0.4
163,966 - EX31_RS03380 0.44 +1.1
163,966 - EX31_RS03380 0.44 -0.5
163,966 - EX31_RS03380 0.44 -0.5
163,966 - EX31_RS03380 0.44 +0.1
163,966 - EX31_RS03380 0.44 -0.1
163,966 - EX31_RS03380 0.44 +0.4
163,966 - EX31_RS03380 0.44 -0.4
163,966 - EX31_RS03380 0.44 +0.8
163,966 - EX31_RS03380 0.44 +1.4
163,966 - EX31_RS03380 0.44 -0.2
163,966 - EX31_RS03380 0.44 -0.9
163,966 - EX31_RS03380 0.44 -0.6
163,966 - EX31_RS03380 0.44 +1.9
163,966 - EX31_RS03380 0.44 +0.8
163,966 - EX31_RS03380 0.44 -0.1
163,969 + EX31_RS03380 0.45 -0.4
164,066 - EX31_RS03380 0.57 +1.0
164,066 - EX31_RS03380 0.57 +0.1
164,066 - EX31_RS03380 0.57 -0.1
164,152 + EX31_RS03380 0.68 -0.1
164,152 + EX31_RS03380 0.68 -0.2
164,152 + EX31_RS03380 0.68 +0.1
164,152 + EX31_RS03380 0.68 +0.3
164,152 + EX31_RS03380 0.68 +0.1
164,153 - EX31_RS03380 0.68 +0.6
164,153 - EX31_RS03380 0.68 -0.3
164,153 - EX31_RS03380 0.68 -0.2
164,212 + EX31_RS03380 0.75 -0.7
164,213 - EX31_RS03380 0.75 -0.1
164,213 - EX31_RS03380 0.75 -0.2
164,293 + EX31_RS03380 0.85 +0.5
164,293 + EX31_RS03380 0.85 -0.1
164,293 + EX31_RS03380 0.85 +0.7
164,294 - EX31_RS03380 0.85 -1.0
164,359 + +0.1
164,360 - -0.7
164,383 + +0.3
164,518 + -0.5
164,519 - +0.0
164,605 + -0.7
164,671 - -0.3
164,749 - +0.0
164,753 - -1.2
164,779 + +0.5
164,801 - -0.4
164,801 - +0.7
164,824 + -0.4
164,824 + -0.5
164,825 - +0.8
164,960 + EX31_RS03385 0.14 -0.2
164,960 + EX31_RS03385 0.14 +0.1
164,960 + EX31_RS03385 0.14 -0.6
164,961 - EX31_RS03385 0.14 -0.8
164,969 + EX31_RS03385 0.15 -0.6
164,986 + EX31_RS03385 0.17 +1.1
164,986 + EX31_RS03385 0.17 -0.6
164,986 + EX31_RS03385 0.17 -0.2
164,986 + EX31_RS03385 0.17 -0.7
164,986 + EX31_RS03385 0.17 +1.2
164,987 - EX31_RS03385 0.17 -1.5
165,008 - EX31_RS03385 0.19 -1.1
165,008 - EX31_RS03385 0.19 -0.6
165,010 + EX31_RS03385 0.19 -0.1
165,020 - EX31_RS03385 0.21 -0.3
165,023 + EX31_RS03385 0.21 +0.4
165,023 + EX31_RS03385 0.21 +0.1
165,023 + EX31_RS03385 0.21 +0.0
165,024 - EX31_RS03385 0.21 -0.8
165,071 - EX31_RS03385 0.26 -0.8
165,074 + EX31_RS03385 0.27 -0.2
165,074 + EX31_RS03385 0.27 -0.6
165,074 + EX31_RS03385 0.27 +0.9
165,074 + EX31_RS03385 0.27 +0.1
165,075 - EX31_RS03385 0.27 -0.2
165,075 - EX31_RS03385 0.27 -0.1
165,097 - EX31_RS03385 0.29 -0.1
165,099 + EX31_RS03385 0.30 +1.0
165,099 + EX31_RS03385 0.30 +0.2
165,142 + EX31_RS03385 0.34 -0.4
165,142 + EX31_RS03385 0.34 +0.6
165,142 + EX31_RS03385 0.34 -2.5
165,142 + EX31_RS03385 0.34 -0.4
165,142 + EX31_RS03385 0.34 -0.3
165,142 + EX31_RS03385 0.34 +0.9
165,142 + EX31_RS03385 0.34 -0.2
165,151 + EX31_RS03385 0.36 +0.7
165,203 + EX31_RS03385 0.41 -0.4
165,203 + EX31_RS03385 0.41 -0.1
165,206 + EX31_RS03385 0.42 -0.1
165,332 + EX31_RS03385 0.56 +0.0
165,332 + EX31_RS03385 0.56 +0.4
165,332 + EX31_RS03385 0.56 -1.0
165,332 + EX31_RS03385 0.56 +0.2
165,332 + EX31_RS03385 0.56 -1.3
165,332 + EX31_RS03385 0.56 +0.7
165,332 + EX31_RS03385 0.56 -1.0
165,332 + EX31_RS03385 0.56 +0.2
165,332 + EX31_RS03385 0.56 -0.3
165,332 + EX31_RS03385 0.56 -0.9
165,333 - EX31_RS03385 0.56 -0.6
165,333 - EX31_RS03385 0.56 +0.4
165,333 - EX31_RS03385 0.56 +0.1
165,333 - EX31_RS03385 0.56 -0.1
165,333 - EX31_RS03385 0.56 -0.5
165,334 + EX31_RS03385 0.56 -0.2
165,334 + EX31_RS03385 0.56 -1.1
165,334 + EX31_RS03385 0.56 +0.0
165,335 - EX31_RS03385 0.57 -0.4
165,335 - EX31_RS03385 0.57 +0.8
165,335 - EX31_RS03385 0.57 -0.6
165,362 + EX31_RS03385 0.60 -0.7

Or see this region's nucleotide sequence