Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01430 and EX31_RS01435 are separated by 113 nucleotides EX31_RS01435 and EX31_RS01440 are separated by 201 nucleotides EX31_RS01440 and EX31_RS01445 are separated by 4 nucleotides EX31_RS01445 and EX31_RS01450 overlap by 32 nucleotides
EX31_RS01430: EX31_RS01430 - type 1 glutamine amidotransferase domain-containing protein, at 321,819 to 322,499
_RS01430
EX31_RS01435: EX31_RS01435 - TetR/AcrR family transcriptional regulator, at 322,613 to 323,224
_RS01435
EX31_RS01440: EX31_RS01440 - molecular chaperone HscC, at 323,426 to 325,111
_RS01440
EX31_RS01445: EX31_RS01445 - J domain-containing protein, at 325,116 to 325,688
_RS01445
EX31_RS01450: EX31_RS01450 - hypothetical protein, at 325,657 to 327,060
_RS01450
Position (kb) 323
324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2 at 322.506 kb on + strand at 322.614 kb on + strand at 322.615 kb on - strand at 322.631 kb on - strand at 322.673 kb on - strand at 322.673 kb on - strand at 322.673 kb on - strand at 322.673 kb on - strand at 322.676 kb on - strand, within EX31_RS01435 at 322.811 kb on - strand, within EX31_RS01435 at 322.898 kb on - strand, within EX31_RS01435 at 322.898 kb on - strand, within EX31_RS01435 at 322.898 kb on - strand, within EX31_RS01435 at 322.912 kb on - strand, within EX31_RS01435 at 322.945 kb on - strand, within EX31_RS01435 at 322.945 kb on - strand, within EX31_RS01435 at 322.945 kb on - strand, within EX31_RS01435 at 322.945 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.071 kb on - strand, within EX31_RS01435 at 323.074 kb on - strand, within EX31_RS01435 at 323.074 kb on - strand, within EX31_RS01435 at 323.180 kb on - strand at 323.396 kb on + strand at 323.396 kb on + strand at 323.397 kb on - strand at 323.398 kb on + strand at 323.399 kb on - strand at 323.399 kb on - strand at 323.399 kb on - strand at 323.433 kb on + strand at 323.433 kb on + strand at 323.434 kb on - strand at 323.439 kb on + strand at 323.439 kb on + strand at 323.439 kb on + strand at 323.445 kb on + strand at 323.446 kb on - strand at 323.446 kb on - strand at 323.510 kb on + strand at 323.596 kb on + strand, within EX31_RS01440 at 323.597 kb on - strand, within EX31_RS01440 at 323.597 kb on - strand, within EX31_RS01440 at 323.780 kb on + strand, within EX31_RS01440 at 323.792 kb on - strand, within EX31_RS01440 at 323.962 kb on + strand, within EX31_RS01440 at 323.963 kb on - strand, within EX31_RS01440 at 323.963 kb on - strand, within EX31_RS01440 at 324.167 kb on + strand, within EX31_RS01440 at 324.235 kb on + strand, within EX31_RS01440 at 324.396 kb on + strand, within EX31_RS01440 at 324.396 kb on + strand, within EX31_RS01440 at 324.396 kb on + strand, within EX31_RS01440 at 324.500 kb on - strand, within EX31_RS01440 at 324.586 kb on - strand, within EX31_RS01440 at 324.586 kb on - strand, within EX31_RS01440 at 324.654 kb on - strand, within EX31_RS01440 at 324.761 kb on + strand, within EX31_RS01440 at 324.761 kb on + strand, within EX31_RS01440 at 324.761 kb on + strand, within EX31_RS01440 at 324.761 kb on + strand, within EX31_RS01440 at 324.869 kb on - strand, within EX31_RS01440 at 324.956 kb on + strand at 324.957 kb on - strand at 325.142 kb on - strand at 325.227 kb on + strand, within EX31_RS01445 at 325.227 kb on + strand, within EX31_RS01445 at 325.228 kb on - strand, within EX31_RS01445 at 325.283 kb on + strand, within EX31_RS01445 at 325.340 kb on - strand, within EX31_RS01445 at 325.478 kb on + strand, within EX31_RS01445 at 325.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 322,506 + +0.4 322,614 + -0.7 322,615 - -0.3 322,631 - -0.1 322,673 - +1.4 322,673 - +1.0 322,673 - +0.9 322,673 - +1.3 322,676 - EX31_RS01435 0.10 -0.3 322,811 - EX31_RS01435 0.32 +0.9 322,898 - EX31_RS01435 0.47 +0.0 322,898 - EX31_RS01435 0.47 +0.8 322,898 - EX31_RS01435 0.47 +1.0 322,912 - EX31_RS01435 0.49 +0.8 322,945 - EX31_RS01435 0.54 +1.0 322,945 - EX31_RS01435 0.54 -0.0 322,945 - EX31_RS01435 0.54 +0.6 322,945 - EX31_RS01435 0.54 +1.1 323,011 - EX31_RS01435 0.65 +1.2 323,011 - EX31_RS01435 0.65 +1.0 323,011 - EX31_RS01435 0.65 +1.6 323,011 - EX31_RS01435 0.65 +1.0 323,011 - EX31_RS01435 0.65 +0.9 323,011 - EX31_RS01435 0.65 +0.8 323,011 - EX31_RS01435 0.65 +0.4 323,011 - EX31_RS01435 0.65 +0.5 323,068 - EX31_RS01435 0.74 +1.1 323,068 - EX31_RS01435 0.74 +0.8 323,068 - EX31_RS01435 0.74 +1.2 323,068 - EX31_RS01435 0.74 +0.8 323,068 - EX31_RS01435 0.74 +0.9 323,068 - EX31_RS01435 0.74 +0.9 323,068 - EX31_RS01435 0.74 +1.0 323,068 - EX31_RS01435 0.74 +1.9 323,068 - EX31_RS01435 0.74 +1.4 323,068 - EX31_RS01435 0.74 +1.1 323,068 - EX31_RS01435 0.74 -0.1 323,071 - EX31_RS01435 0.75 +1.2 323,074 - EX31_RS01435 0.75 +1.4 323,074 - EX31_RS01435 0.75 -0.2 323,180 - +0.7 323,396 + -0.3 323,396 + +2.0 323,397 - +0.3 323,398 + +0.3 323,399 - -0.4 323,399 - +0.8 323,399 - -0.9 323,433 + -0.6 323,433 + -0.3 323,434 - +0.6 323,439 + +0.2 323,439 + +0.2 323,439 + -0.4 323,445 + -0.6 323,446 - -1.4 323,446 - -0.3 323,510 + -0.4 323,596 + EX31_RS01440 0.10 +0.5 323,597 - EX31_RS01440 0.10 -0.3 323,597 - EX31_RS01440 0.10 -0.9 323,780 + EX31_RS01440 0.21 +0.8 323,792 - EX31_RS01440 0.22 -0.2 323,962 + EX31_RS01440 0.32 +1.1 323,963 - EX31_RS01440 0.32 -0.1 323,963 - EX31_RS01440 0.32 +0.2 324,167 + EX31_RS01440 0.44 -0.6 324,235 + EX31_RS01440 0.48 +1.1 324,396 + EX31_RS01440 0.58 +0.8 324,396 + EX31_RS01440 0.58 +1.2 324,396 + EX31_RS01440 0.58 -1.9 324,500 - EX31_RS01440 0.64 -0.2 324,586 - EX31_RS01440 0.69 -0.3 324,586 - EX31_RS01440 0.69 -0.3 324,654 - EX31_RS01440 0.73 -0.8 324,761 + EX31_RS01440 0.79 +0.4 324,761 + EX31_RS01440 0.79 +0.9 324,761 + EX31_RS01440 0.79 +0.1 324,761 + EX31_RS01440 0.79 +1.3 324,869 - EX31_RS01440 0.86 -1.0 324,956 + -0.3 324,957 - -0.0 325,142 - -0.1 325,227 + EX31_RS01445 0.19 -0.1 325,227 + EX31_RS01445 0.19 -1.7 325,228 - EX31_RS01445 0.20 -0.1 325,283 + EX31_RS01445 0.29 -1.3 325,340 - EX31_RS01445 0.39 +0.9 325,478 + EX31_RS01445 0.63 +0.4 325,635 - +0.5
Or see this region's nucleotide sequence